MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.0 nTPM
HPA Brain:34.7 nTPM
GTEx:38.0 nTPM
FANTOM5:10.8 Scaled Tags Per Million
Pig:29.1 nTPM
Mouse:15.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.6
2586 Male, age 75, left hemisphere 43.4
1827 Male, age 72, unknown 37.6
1870 Female, age 42, unknown 35.1
2828 Female, age 72, unknown 30.7
2219 Male, age 76, both hemispheres 30.6
1833 Male, age 53, unknown 30.2
2666 Male, age 74, left hemisphere 29.0
2411 Female, age 72, unknown 27.5
1830 Male, age 51, unknown 27.4
2019 Male, age 18, unknown 24.4
Dorsal raphe nucleus
nTPM: 29.9
2047 Male, age 72, unknown 33.0
2298 Female, age 72, unknown 30.8
2750 Male, age 76, both hemispheres 30.4
1828 Male, age 53, unknown 28.3
2016 Female, age 72, unknown 27.0
Inferior colliculus
nTPM: 28.3
2849 Male, age 72, unknown 30.8
1848 Female, age 42, unknown 29.4
1890 Male, age 53, unknown 27.0
2097 Female, age 72, unknown 26.0
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 34.7
1795 Male, age 51, unknown 37.7
1947 Male, age 18, unknown 33.8
2502 Female, age 75, unknown 32.7
Periaquaductal grey, dorsal
nTPM: 29.6
1840 Male, age 53, unknown 32.8
2464 Female, age 72, unknown 29.5
2850 Male, age 76, both hemispheres 29.3
1831 Male, age 72, unknown 26.7
Periaquaductal grey, lateral
nTPM: 30.9
2053 Male, age 18, unknown 35.1
2272 Male, age 74, both hemispheres 29.3
2140 Male, age 76, both hemispheres 28.3
Pretectal area
nTPM: 30.6
1816 Male, age 51, unknown 35.1
2825 Male, age 18, unknown 34.5
2407 Male, age 75, both hemispheres 33.8
2224 Female, age 72, unknown 33.5
1817 Female, age 42, unknown 30.6
1815 Male, age 53, unknown 30.4
2007 Male, age 72, unknown 30.0
1944 Female, age 72, unknown 29.1
2667 Female, age 75, unknown 28.7
2273 Male, age 74, both hemispheres 25.7
2316 Male, age 76, right hemisphere 25.1
Red nucleus
nTPM: 25.4
2584 Male, age 75, left hemisphere 35.4
2588 Male, age 74, left hemisphere 31.7
2725 Female, age 75, unknown 27.1
2769 Male, age 72, unknown 24.6
2503 Female, age 72, unknown 24.1
2227 Male, age 72, unknown 24.0
2785 Male, age 18, unknown 24.0
1821 Female, age 72, unknown 23.7
1954 Female, age 42, unknown 23.7
2823 Male, age 76, right hemisphere 22.4
1865 Male, age 51, unknown 22.2
1904 Male, age 53, unknown 22.0
Substantia nigra
nTPM: 31.9
2241 Male, age 72, unknown 35.3
2590 Female, age 75, unknown 34.4
1916 Female, age 42, unknown 34.3
2409 Female, age 72, unknown 33.2
1941 Male, age 53, unknown 32.3
2665 Male, age 74, both hemispheres 32.0
2583 Male, age 75, right hemisphere 31.9
1851 Male, age 51, unknown 30.6
2699 Male, age 18, unknown 29.6
1889 Female, age 72, unknown 26.0
Superior colliculus
nTPM: 30.5
2664 Male, age 75, both hemispheres 43.2
2261 Male, age 18, unknown 34.2
1796 Male, age 53, unknown 33.9
1839 Male, age 51, unknown 31.3
2087 Female, age 72, unknown 30.7
1895 Male, age 76, right hemisphere 30.6
2668 Female, age 75, unknown 29.0
2587 Male, age 74, left hemisphere 25.8
1913 Female, age 42, unknown 23.9
1995 Male, age 72, unknown 22.3
Ventral tegmental area
nTPM: 30.3
2223 Female, age 72, unknown 33.6
1915 Female, age 42, unknown 32.1
1942 Male, age 51, unknown 31.0
2021 Male, age 53, unknown 30.8
2410 Female, age 72, unknown 27.4
2218 Male, age 76, both hemispheres 27.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.0
Samples: 139

Max nTPM: 144.9
Min nTPM: 8.3
Std nTPM: 15.9
Median nTPM: 35.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 144.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 100.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 79.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 72.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 69.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 69.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 68.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 57.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 54.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 54.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 54.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.8
FF:10158-103A5 76 years, female 10.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.9
Samples: 4

Max nTPM: 30.2
Min nTPM: 23.8
Sample A Female 23.8
Sample B Female 25.2
Sample C Male 24.5
Sample D Male 30.2
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 31.3
Min nTPM: 20.6
Sample A Female 31.3
Sample B Female 28.8
Sample C Male 23.0
Sample D Male 20.6
Periaqueductal gray
nTPM: 29.1
Samples: 3

Max nTPM: 33.7
Min nTPM: 25.7
Sample B Female 33.7
Sample C Male 25.7
Sample D Male 28.0
Superior colliculi
nTPM: 20.9
Samples: 4

Max nTPM: 24.7
Min nTPM: 14.8
Sample A Female 21.9
Sample B Female 14.8
Sample C Male 22.2
Sample D Male 24.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 15.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.9
Samples: 4

Max nTPM: 21.3
Min nTPM: 13.5
Sample A Male 14.8
Sample B Male 14.0
Sample C Female 13.5
Sample D Female 21.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73497732 Antisense, RP_051121_01_E11, Mouse strain C57BL/6J (56 days, male) 0.0

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