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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
56.5
nTPM
HPA Brain:
56.2
nTPM
GTEx:
56.5
nTPM
FANTOM5:
51.4
Scaled Tags Per Million
Pig:
23.6
nTPM
Mouse:
13.6
nTPM
Allen mouse:
0.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA023051
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.2
Sample id
Sample description
nTPM
Hippocampus nTPM: 44.3
1855
Male, age 76, left hemisphere
52.4
1898
Male, age 80, left hemisphere
51.3
2621
Female, age 67, right hemisphere
41.3
2529
Female, age 94, left hemisphere
40.6
1911
Female, age 85, right hemisphere
40.1
2148
Female, age 91, left hemisphere
40.1
Dentate gyrus nTPM: 47.1
2530
Female, age 94, left hemisphere
54.9
2531
Female, age 67, both hemispheres
52.8
1927
Female, age 91, both hemispheres
47.1
2246
Female, age 85, both hemispheres
47.0
2010
Male, age 76, both hemispheres
45.8
2528
Male, age 74, both hemispheres
35.2
Entorhinal gyrus nTPM: 47.6
2764
Male, age 80, right hemisphere
58.3
2613
Female, age 94, left hemisphere
58.0
1787
Male, age 76, left hemisphere
48.0
1938
Female, age 85, left hemisphere
46.4
2686
Male, age 75, right hemisphere
45.1
2117
Female, age 91, right hemisphere
29.5
Hippocampus, CA1 nTPM: 51.3
2749
Male, age 80, left hemisphere
70.4
2045
Male, age 76, both hemispheres
64.2
1873
Female, age 85, both hemispheres
45.9
2082
Female, age 91, right hemisphere
40.8
2527
Male, age 74, both hemispheres
35.3
Hippocampus, CA2 nTPM: 45.0
1892
Male, age 76, both hemispheres
55.6
1963
Male, age 80, left hemisphere
49.0
2437
Female, age 94, left hemisphere
46.9
2113
Female, age 91, right hemisphere
40.8
1940
Female, age 85, left hemisphere
40.1
2249
Male, age 74, both hemispheres
37.6
Hippocampus, CA3 nTPM: 44.6
2137
Male, age 80, left hemisphere
55.1
2861
Female, age 67, both hemispheres
51.7
1867
Male, age 76, both hemispheres
46.7
2620
Female, age 94, left hemisphere
42.9
1891
Female, age 85, both hemispheres
37.1
2436
Male, age 74, both hemispheres
34.2
Parahippocampal cortex nTPM: 44.9
1850
Male, age 80, both hemispheres
52.8
1933
Female, age 85, both hemispheres
50.4
2245
Female, age 91, both hemispheres
47.6
2018
Male, age 76, both hemispheres
47.1
2622
Female, age 67, right hemisphere
47.1
2532
Female, age 72, left hemisphere
45.5
2693
Female, age 94, both hemispheres
44.0
1990
Female, age 91, right hemisphere
40.8
2692
Male, age 74, both hemispheres
37.3
2250
Female, age 67, right hemisphere
36.1
Perirhinal gyrus nTPM: 56.2
2848
Male, age 76, right hemisphere
61.4
1794
Male, age 80, right hemisphere
58.8
1841
Female, age 85, right hemisphere
56.5
1847
Female, age 91, left hemisphere
55.6
2521
Female, age 94, right hemisphere
48.7
Subiculum nTPM: 40.0
2438
Female, age 94, left hemisphere
53.9
1977
Female, age 85, both hemispheres
46.4
1901
Male, age 80, both hemispheres
39.9
2729
Female, age 91, right hemisphere
37.1
2619
Male, age 74, both hemispheres
32.8
2042
Male, age 76, both hemispheres
30.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 56.5
Samples: 197
Max nTPM: 169.1
Min nTPM: 8.0
Std nTPM: 26.9
Median nTPM: 54.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
169.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
154.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
140.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
120.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
115.2
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
114.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
110.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
107.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
107.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
106.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
104.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
102.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
99.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
98.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
96.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
95.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
94.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
92.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
92.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
91.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
90.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
89.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
88.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
87.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
84.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
84.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
83.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
83.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
83.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
82.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
82.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
82.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
82.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
81.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
80.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
79.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
78.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
76.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
76.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
76.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
74.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
73.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
73.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
73.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
72.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
72.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
72.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
72.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
71.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
71.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
70.6
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
69.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
69.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
69.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
68.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
68.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
68.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
68.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
67.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
66.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
66.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
66.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
66.2
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
65.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
65.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
64.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
64.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
64.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
64.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
63.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
63.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
63.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
62.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
61.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
61.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
61.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
61.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
60.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
60.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
60.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
60.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
60.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
59.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
59.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
58.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
58.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
57.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
57.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
56.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
56.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
56.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
56.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
56.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
55.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
55.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
55.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
54.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
54.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
54.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
54.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
54.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
53.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
52.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
52.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
51.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
51.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
51.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
51.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
51.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
51.1
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
50.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
50.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
50.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
50.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
50.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
49.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
49.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
48.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
47.9
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
46.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
46.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
45.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
45.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
45.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
45.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
45.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
45.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
44.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
44.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
44.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
43.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
43.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
43.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
43.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
42.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
42.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
42.1
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
41.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
41.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
40.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
39.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
38.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
37.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
37.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
37.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
37.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
36.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
36.1
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
35.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
34.0
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
33.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
33.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
33.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
33.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
32.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
32.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
31.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
31.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
31.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
31.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
30.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
29.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
29.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
29.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
28.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
28.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
28.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
27.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
27.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
27.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
27.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
27.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
27.0
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
26.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
26.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
26.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
25.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
25.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
23.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
23.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
22.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
22.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
22.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
21.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
20.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
19.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
19.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
18.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
18.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
17.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
17.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
16.6
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
16.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
15.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
15.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
9.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
8.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 13.6
Samples: 4
Max nTPM: 18.1
Min nTPM: 9.4
Sample A
Male
11.9
Sample B
Male
15.0
Sample C
Female
9.4
Sample D
Female
18.1
Hippocampal formation nTPM: 10.1
Samples: 4
Max nTPM: 12.7
Min nTPM: 8.8
Sample A
Male
12.7
Sample B
Male
8.8
Sample C
Female
9.0
Sample D
Female
9.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.