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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMSB4X is not prognostic in Pancreatic Adenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5580.0
Number of samples
176
Samples
Sample
Description
TPM
TCGA-FB-AAQ3-01A
0 years, female, white, stage:Stage IIB, dead, 31 days
13178.5
TCGA-XD-AAUL-01A
0 years, male, white, stage:Stage IIA, alive, 498 days
10391.3
TCGA-RB-AA9M-01A
0 years, male, white, stage:Stage IIB, alive, 286 days
10093.1
TCGA-IB-AAUQ-01A
0 years, male, white, stage:Stage IIB, dead, 183 days
10066.5
TCGA-3A-A9IB-01A
0 years, female, white, stage:Stage IIB, dead, 224 days
9655.5
TCGA-3A-A9IC-01A
0 years, female, white, stage:Stage IIB, dead, 738 days
9632.1
TCGA-Z5-AAPL-01A
0 years, female, white, stage:Stage IIA, alive, 467 days
9463.6
TCGA-IB-8127-01A
0 years, male, white, stage:Stage IIB, alive, 522 days
9129.2
TCGA-2J-AAB6-01A
0 years, male, white, stage:Stage IIA, dead, 293 days
9054.4
TCGA-HV-AA8X-01A
0 years, female, asian, stage:Stage IIB, dead, 532 days
8977.6
TCGA-HZ-7925-01A
0 years, male, white, stage:Stage IIB, dead, 614 days
8735.8
TCGA-HZ-8636-01A
0 years, female, white, stage:Stage IV, dead, 545 days
8485.8
TCGA-3A-A9IH-01A
0 years, female, white, stage:Stage IA, alive, 1021 days
8394.1
TCGA-2J-AABO-01A
0 years, male, white, stage:Stage IIB, alive, 440 days
8378.3
TCGA-Q3-A5QY-01A
0 years, male, white, stage:Stage IIB, alive, 416 days
8295.0
TCGA-IB-7646-01A
0 years, male, white, stage:Stage IIB, dead, 145 days
8279.0
TCGA-US-A77J-01A
0 years, female, white, stage:Stage IIB, dead, 568 days
8116.5
TCGA-US-A779-01A
0 years, female, white, stage:Stage IIB, dead, 511 days
8098.4
TCGA-IB-7889-01A
0 years, female, white, stage:Stage IIB, dead, 481 days
8069.8
TCGA-2J-AABU-01A
0 years, male, white, stage:Stage IIB, dead, 277 days
7936.5
TCGA-XN-A8T5-01A
0 years, female, white, stage:Stage IB, alive, 720 days
7852.8
TCGA-2L-AAQE-01A
0 years, male, white, stage:Stage IIB, dead, 684 days
7815.8
TCGA-YH-A8SY-01A
0 years, female, white, stage:'--, alive, 388 days
7795.6
TCGA-FB-AAPS-01A
0 years, female, white, stage:Stage IIB, alive, 228 days
7783.4
TCGA-IB-A5SS-01A
0 years, female, white, stage:Stage IIB, dead, 460 days
7741.7
TCGA-FB-AAPZ-01A
0 years, male, white, stage:Stage IIB, alive, 716 days
7667.6
TCGA-RL-AAAS-01A
0 years, female, white, stage:Stage IB, alive, 9 days
7577.2
TCGA-OE-A75W-01A
0 years, male, white, stage:Stage IIA, dead, 267 days
7558.0
TCGA-2L-AAQJ-01A
0 years, female, white, stage:Stage III, dead, 394 days
7471.3
TCGA-IB-AAUS-01A
0 years, female, white, stage:Stage IIB, alive, 225 days
7425.0
TCGA-IB-AAUR-01A
0 years, male, white, stage:Stage IIB, alive, 338 days
7405.5
TCGA-HZ-8315-01A
0 years, female, white, stage:Stage IIA, dead, 299 days
7335.4
TCGA-FB-A5VM-01A
0 years, male, white, stage:Stage IB, dead, 498 days
7283.4
TCGA-2J-AABP-01A
0 years, female, white, stage:Stage IIB, alive, 463 days
7283.4
TCGA-PZ-A5RE-01A
0 years, female, white, stage:Stage IIB, dead, 470 days
7281.9
TCGA-H6-8124-01A
0 years, female, white, stage:Stage IIB, alive, 392 days
7251.7
TCGA-FB-AAPY-01A
0 years, male, white, stage:Stage IIB, dead, 1059 days
7221.1
TCGA-IB-AAUP-01A
0 years, male, white, stage:Stage IIB, alive, 431 days
7136.1
TCGA-2J-AAB8-01A
0 years, male, white, stage:Stage IIB, alive, 80 days
7095.9
TCGA-2J-AAB4-01A
0 years, male, white, stage:Stage IIB, alive, 729 days
6981.5
TCGA-IB-AAUV-01A
0 years, male, white, stage:Stage IIB, alive, 404 days
6874.7
TCGA-IB-7887-01A
0 years, female, white, stage:Stage IIB, dead, 110 days
6864.4
TCGA-XD-AAUI-01A
0 years, female, white, stage:Stage IIB, dead, 366 days
6847.7
TCGA-HZ-A4BH-01A
0 years, male, white, stage:Stage IIB, alive, 194 days
6803.8
TCGA-IB-A6UF-01A
0 years, male, white, stage:Stage IIB, alive, 666 days
6775.2
TCGA-2J-AABF-01A
0 years, male, white, stage:Stage IIB, dead, 691 days
6739.5
TCGA-2L-AAQL-01A
0 years, male, white, stage:Stage IIB, dead, 292 days
6727.2
TCGA-YB-A89D-01A
0 years, male, white, stage:Stage IIB, alive, 350 days
6724.5
TCGA-2L-AAQI-01A
0 years, male, white, stage:Stage IIB, dead, 103 days
6655.3
TCGA-HZ-A77Q-01A
0 years, female, white, stage:Stage IIB, alive, 33 days
6647.4
TCGA-IB-7890-01A
0 years, male, stage:Stage IB, dead, 598 days
6644.1
TCGA-F2-A7TX-01A
0 years, male, white, stage:Stage IIB, dead, 95 days
6597.9
TCGA-XN-A8T3-01A
0 years, male, white, stage:Stage IB, alive, 951 days
6576.3
TCGA-HZ-7919-01A
0 years, female, white, stage:Stage IIB, dead, 593 days
6525.2
TCGA-2J-AABR-01A
0 years, female, white, stage:Stage IIA, alive, 438 days
6518.5
TCGA-HV-A7OL-01A
0 years, male, asian, stage:Stage IIA, alive, 252 days
6490.3
TCGA-IB-AAUU-01A
0 years, male, white, stage:Stage IIB, alive, 245 days
6467.8
TCGA-IB-A5SO-01A
0 years, male, white, stage:Stage IIB, dead, 365 days
6459.4
TCGA-F2-A8YN-01A
0 years, male, white, stage:Stage IIA, alive, 517 days
6412.0
TCGA-S4-A8RP-01A
0 years, female, white, stage:Stage IIB, dead, 702 days
6396.2
TCGA-FB-A7DR-01A
0 years, male, asian, stage:Stage IIA, dead, 353 days
6389.9
TCGA-HZ-7922-01A
0 years, female, white, stage:Stage IIB, alive, 4 days
6384.9
TCGA-HZ-A49I-01A
0 years, male, white, stage:Stage IIB, dead, 308 days
6329.7
TCGA-2J-AABH-01A
0 years, male, white, stage:Stage IIA, alive, 1287 days
6274.4
TCGA-IB-AAUN-01A
0 years, female, white, stage:Stage IB, dead, 144 days
6264.3
TCGA-3A-A9IU-01A
0 years, male, white, stage:Stage IIB, dead, 458 days
6230.8
TCGA-IB-7885-01A
0 years, female, white, stage:Stage IIB, alive, 1257 days
6228.3
TCGA-HZ-8001-01A
0 years, male, white, stage:Stage III, alive, 706 days
6163.0
TCGA-IB-7649-01A
0 years, female, stage:Stage IIB, dead, 467 days
6134.6
TCGA-L1-A7W4-01A
0 years, female, white, stage:Stage IIB, dead, 278 days
6130.5
TCGA-3E-AAAY-01A
0 years, male, white, stage:Stage IIB, alive, 2285 days
6103.5
TCGA-IB-7652-01A
0 years, female, asian, stage:Stage IIB, alive, 1116 days
6023.6
TCGA-HZ-8002-01A
0 years, male, white, stage:Stage IIB, dead, 366 days
5990.8
TCGA-H6-A45N-01A
0 years, female, white, stage:Stage IIB, dead, 397 days
5960.9
TCGA-IB-7644-01A
0 years, female, white, stage:Stage IV, dead, 394 days
5905.2
TCGA-IB-AAUW-01A
0 years, female, white, stage:Stage IIB, dead, 230 days
5900.4
TCGA-IB-A5ST-01A
0 years, female, white, stage:Stage IIB, alive, 635 days
5886.1
TCGA-FB-AAQ2-01A
0 years, female, white, stage:Stage IIB, dead, 153 days
5865.4
TCGA-HV-AA8V-01A
0 years, male, asian, stage:Stage IIB, alive, 920 days
5813.8
TCGA-2L-AAQA-01A
0 years, male, white, stage:Stage IIB, dead, 143 days
5812.8
TCGA-IB-7645-01A
0 years, female, stage:Stage IIB, dead, 1502 days
5790.8
TCGA-HV-A5A6-01A
0 years, female, asian, stage:Stage IIB, dead, 2036 days
5699.9
TCGA-IB-A5SQ-01A
0 years, female, white, stage:Stage IB, dead, 219 days
5693.9
TCGA-2J-AABE-01A
0 years, male, white, stage:Stage IIA, alive, 676 days
5658.6
TCGA-3A-A9I7-01A
0 years, male, black or african american, stage:Stage IIB, alive, 1323 days
5630.9
TCGA-IB-7886-01A
0 years, male, white, stage:Stage IIB, dead, 123 days
5506.2
TCGA-US-A776-01A
0 years, male, white, stage:Stage IIA, alive, 1216 days
5482.4
TCGA-3A-A9I9-01A
0 years, male, white, stage:Stage IIA, dead, 634 days
5479.9
TCGA-M8-A5N4-01A
0 years, female, stage:Stage IIA, alive, 584 days
5470.7
TCGA-LB-A7SX-01A
0 years, female, black or african american, stage:Stage IIB, dead, 393 days
5383.3
TCGA-3A-A9IX-01A
0 years, male, white, stage:Stage IA, alive, 1037 days
5373.0
TCGA-F2-6879-01A
0 years, male, white, stage:Stage IIB, dead, 334 days
5361.9
TCGA-HZ-A4BK-01A
0 years, male, white, stage:Stage IIB, alive, 657 days
5357.8
TCGA-HZ-7926-01A
0 years, male, black or african american, stage:Stage IIB, dead, 518 days
5350.4
TCGA-IB-7893-01A
0 years, male, white, stage:Stage IIA, dead, 117 days
5323.2
TCGA-LB-A8F3-01A
0 years, female, black or african american, stage:Stage IIA, alive, 379 days
5323.0
TCGA-3A-A9IZ-01A
0 years, male, white, stage:Stage IIB, dead, 308 days
5298.9
TCGA-HZ-8637-01A
0 years, female, white, stage:Stage IIB, dead, 517 days
5276.2
TCGA-F2-7276-01A
0 years, male, white, stage:Stage IIB, dead, 216 days
5275.5
TCGA-IB-A7LX-01A
0 years, male, white, stage:Stage IIB, dead, 250 days
5247.5
TCGA-IB-7897-01A
0 years, female, white, stage:Stage IIB, dead, 486 days
5228.5
TCGA-FB-AAPU-01A
0 years, female, asian, stage:Stage IIA, dead, 381 days
5222.5
TCGA-IB-AAUT-01A
0 years, male, white, stage:Stage IIB, alive, 287 days
5185.1
TCGA-FB-A4P5-01A
0 years, female, white, stage:Stage IIB, dead, 179 days
5174.8
TCGA-HV-A5A3-01A
0 years, male, asian, stage:Stage IIA, dead, 128 days
5130.8
TCGA-US-A774-01A
0 years, female, white, stage:Stage IIB, dead, 695 days
5102.0
TCGA-2J-AAB9-01A
0 years, female, white, stage:Stage IIB, dead, 627 days
5088.4
TCGA-RB-A7B8-01A
0 years, female, white, stage:Stage IIB, dead, 466 days
5088.3
TCGA-HZ-7920-01A
0 years, male, white, stage:Stage IB, dead, 236 days
5070.8
TCGA-IB-A7M4-01A
0 years, male, white, stage:Stage IIB, alive, 483 days
5052.8
TCGA-S4-A8RO-01A
0 years, female, white, stage:Stage IIB, alive, 525 days
5051.4
TCGA-YY-A8LH-01A
0 years, female, white, stage:Stage IIB, alive, 2016 days
5036.0
TCGA-3A-A9I5-01A
0 years, male, white, stage:'--, alive, 1794 days
5025.8
TCGA-IB-7888-01A
0 years, female, black or african american, stage:Stage IIA, dead, 1332 days
5018.4
TCGA-FB-A4P6-01A
0 years, male, white, stage:Stage IIB, alive, 767 days
5016.6
TCGA-FB-AAQ1-01A
0 years, male, white, stage:Stage IIB, dead, 123 days
5006.7
TCGA-2J-AAB1-01A
0 years, male, white, stage:Stage IIB, dead, 66 days
4948.8
TCGA-H8-A6C1-01A
0 years, male, white, stage:Stage IIA, alive, 671 days
4897.9
TCGA-HZ-A77O-01A
0 years, female, white, stage:Stage IIB, dead, 160 days
4891.6
TCGA-US-A77E-01A
0 years, male, white, stage:Stage IIB, dead, 430 days
4883.0
TCGA-2J-AABA-01A
0 years, male, white, stage:Stage IIB, dead, 607 days
4875.4
TCGA-F2-A44G-01A
0 years, female, white, stage:Stage IIB, dead, 233 days
4867.1
TCGA-IB-7654-01A
0 years, male, white, stage:Stage IIB, dead, 476 days
4815.8
TCGA-FB-A78T-01A
0 years, female, white, stage:Stage IIB, dead, 375 days
4796.8
TCGA-Q3-AA2A-01A
0 years, female, white, stage:Stage IB, alive, 95 days
4785.6
TCGA-HV-A5A4-01A
0 years, female, asian, stage:Stage IIA, alive, 232 days
4716.6
TCGA-F2-7273-01A
0 years, male, black or african american, stage:Stage IIB, dead, 592 days
4693.6
TCGA-HZ-7923-01A
0 years, male, white, stage:Stage IIA, alive, 314 days
4596.8
TCGA-FB-A545-01A
0 years, female, white, stage:Stage IIB, dead, 732 days
4574.4
TCGA-IB-7891-01A
0 years, female, white, stage:Stage IIB, dead, 913 days
4550.3
TCGA-HZ-A77P-01A
0 years, male, white, stage:Stage IIB, alive, 330 days
4526.5
TCGA-HZ-A49G-01A
0 years, female, white, stage:Stage IIB, alive, 660 days
4487.7
TCGA-FB-AAQ0-01A
0 years, male, white, stage:Stage IIA, dead, 473 days
4485.8
TCGA-XD-AAUH-01A
0 years, female, white, stage:Stage IIB, alive, 395 days
4457.0
TCGA-HZ-A8P1-01A
0 years, male, white, stage:Stage IB, alive, 7 days
4406.5
TCGA-XD-AAUG-01A
0 years, female, white, stage:Stage IV, alive, 420 days
4405.2
TCGA-2J-AABI-01A
0 years, female, white, stage:Stage IIA, alive, 969 days
4393.4
TCGA-S4-A8RM-01A
0 years, male, white, stage:Stage IIB, alive, 737 days
4370.9
TCGA-HV-A5A5-01A
0 years, female, asian, stage:Stage IIB, alive, 289 days
4314.5
TCGA-HZ-A49H-01A
0 years, female, white, stage:Stage IIB, alive, 491 days
4294.9
TCGA-IB-A5SP-01A
0 years, male, white, stage:Stage IIA, alive, 482 days
4288.9
TCGA-HZ-7918-01A
0 years, male, white, stage:Stage IIB, alive, 969 days
4243.2
TCGA-2J-AABK-01A
0 years, male, white, stage:Stage IIB, alive, 484 days
4104.6
TCGA-3A-A9J0-01A
0 years, male, white, stage:Stage IIB, alive, 743 days
4001.2
TCGA-US-A77G-01A
0 years, male, white, stage:Stage IIB, dead, 12 days
3889.0
TCGA-HZ-8005-01A
0 years, male, white, stage:Stage IIB, dead, 120 days
3781.0
TCGA-HZ-8638-01A
0 years, female, white, stage:Stage IA, dead, 151 days
3641.3
TCGA-2J-AABT-01A
0 years, female, white, stage:Stage IIB, alive, 319 days
3565.7
TCGA-3E-AAAZ-01A
0 years, male, white, stage:Stage IIA, dead, 2182 days
3552.9
TCGA-IB-7651-01A
0 years, female, white, stage:Stage IIB, dead, 603 days
3508.4
TCGA-HZ-7289-01A
0 years, male, white, stage:Stage IIB, dead, 661 days
3503.0
TCGA-HZ-8519-01A
0 years, male, white, stage:Stage IA, alive, 454 days
3394.4
TCGA-FB-AAPQ-01A
0 years, male, white, stage:Stage IIB, dead, 1130 days
3251.8
TCGA-HZ-7924-01A
0 years, female, white, stage:Stage IIA, alive, 840 days
3217.6
TCGA-FB-AAPP-01A
0 years, male, white, stage:Stage IIB, dead, 485 days
3195.0
TCGA-HZ-8317-01A
0 years, female, white, stage:Stage IIB, dead, 378 days
3154.6
TCGA-F2-A44H-01A
0 years, male, white, stage:Stage IIA, alive, 586 days
3144.5
TCGA-IB-AAUO-01A
0 years, female, white, stage:Stage IIB, dead, 239 days
3027.1
TCGA-FB-AAQ6-01A
0 years, male, white, stage:Stage IA, dead, 244 days
2851.3
TCGA-HZ-A9TJ-01A
0 years, male, white, stage:Stage IV, alive, 603 days
2653.3
TCGA-3A-A9IL-01A
0 years, female, white, stage:Stage I, alive, 2741 days
2462.8
TCGA-LB-A9Q5-01A
0 years, female, white, stage:Stage IIB, dead, 313 days
2423.3
TCGA-IB-A6UG-01A
0 years, male, white, stage:Stage IIB, dead, 41 days
2267.2
TCGA-IB-8126-01A
0 years, female, white, stage:Stage III, alive, 462 days
2090.5
TCGA-2L-AAQM-01A
0 years, male, white, stage:Stage IIB, alive, 1383 days
2068.8
TCGA-3A-A9IJ-01A
0 years, male, white, stage:Stage IB, alive, 1854 days
1960.5
TCGA-HZ-8003-01A
0 years, female, white, stage:Stage IIB, dead, 596 days
1883.8
TCGA-IB-AAUM-01A
0 years, male, white, stage:Stage IIB, alive, 8 days
1767.5
TCGA-3A-A9IN-01A
0 years, female, white, stage:Stage IB, alive, 2084 days
1697.2
TCGA-2J-AABV-01A
0 years, male, white, stage:Stage IIB, dead, 652 days
1194.2
TCGA-HV-A7OP-01A
0 years, male, asian, stage:Stage IIB, alive, 978 days
1138.1
TCGA-3A-A9IV-01A
0 years, female, white, stage:Stage IB, alive, 1103 days
1095.4
TCGA-3A-A9IR-01A
0 years, female, white, stage:Stage IB, alive, 1542 days
830.0
TCGA-3A-A9IO-01A
0 years, male, white, stage:'--, alive, 1942 days
753.1
TCGA-F2-6880-01A
0 years, male, white, stage:Stage IIB, alive, 295 days
618.3
TCGA-3A-A9IS-01A
0 years, male, white, stage:Stage IB, alive, 998 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMSB4X is not prognostic in Pancreatic Adenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1442.2
Number of samples
80
Samples
Sample
Description
TPM
DO33128
0 years, male, NA, stage:, dead, 423 days
2721.3
DO32863
0 years, male, NA, stage:, dead, 715 days
2615.8
DO34809
0 years, female, NA, stage:, dead, 297 days
2613.2
DO34785
0 years, female, NA, stage:, alive, 721 days
2552.8
DO49138
0 years, male, NA, stage:, dead, 230 days
2543.2
DO34696
0 years, male, NA, stage:, alive, 689 days
2533.9
DO49137
0 years, female, NA, stage:, alive, 232 days
2317.2
DO32829
0 years, female, NA, stage:T2N0MX, dead, 1874 days
2143.4
DO49076
0 years, male, NA, stage:, dead, 480 days
2069.5
DO34736
0 years, female, NA, stage:, dead, 203 days
2029.2
DO49130
0 years, female, NA, stage:, alive, 351 days
2003.1
DO33984
0 years, male, NA, stage:, alive, 847 days
1948.8
DO32875
0 years, male, NA, stage:, dead, 348 days
1938.4
DO49193
0 years, male, NA, stage:, dead, 1 days
1920.5
DO34905
0 years, male, NA, stage:, alive, 1142 days
1894.7
DO34640
0 years, female, NA, stage:, dead, 287 days
1846.9
DO49183
0 years, female, NA, stage:, dead, 429 days
1806.5
DO33368
0 years, male, NA, stage:, dead, 98 days
1794.9
DO49133
0 years, female, NA, stage:, alive, 188 days
1794.5
DO34432
0 years, female, NA, stage:, dead, 400 days
1771.2
DO49168
0 years, male, NA, stage:, alive, 149 days
1754.3
DO33344
0 years, male, NA, stage:, dead, 361 days
1745.3
DO34656
0 years, female, NA, stage:, alive, 834 days
1738.7
DO34600
0 years, male, NA, stage:, dead, 537 days
1730.3
DO34728
0 years, female, NA, stage:, alive, 508 days
1716.8
DO33512
female, NA, stage:, dead, 499 days
1689.4
DO34817
0 years, female, NA, stage:, alive, 540 days
1657.1
DO33552
0 years, female, NA, stage:, alive, 873 days
1647.9
DO49164
0 years, male, NA, stage:, alive, 272 days
1629.8
DO49090
0 years, female, NA, stage:, dead, 152 days
1627.9
DO34849
0 years, female, NA, stage:, dead, 272 days
1616.6
DO49185
0 years, male, NA, stage:, alive, 179 days
1569.5
DO49127
0 years, female, NA, stage:, alive, 392 days
1546.1
DO34368
0 years, female, NA, stage:, dead, 537 days
1534.2
DO32860
0 years, male, NA, stage:, dead, 1259 days
1532.9
DO34608
0 years, female, NA, stage:, dead, 709 days
1504.4
DO34448
0 years, female, NA, stage:, dead, 719 days
1495.0
DO49135
0 years, male, NA, stage:, alive, 270 days
1485.3
DO49080
0 years, male, NA, stage:, alive, 83 days
1452.2
DO34680
0 years, male, NA, stage:, dead, 99 days
1434.2
DO49204
0 years, male, NA, stage:, dead, 156 days
1416.2
DO33168
0 years, female, NA, stage:, dead, 8 days
1401.2
DO49113
0 years, female, NA, stage:, alive, 413 days
1399.2
DO32900
0 years, male, NA, stage:, dead, 768 days
1398.5
DO33408
0 years, female, NA, stage:, alive, 909 days
1361.8
DO34312
0 years, female, NA, stage:, dead, 226 days
1345.9
DO49129
0 years, male, NA, stage:, alive, 337 days
1317.7
DO49170
0 years, male, NA, stage:, alive, 197 days
1294.8
DO49079
0 years, male, NA, stage:, dead, 332 days
1291.4
DO49178
0 years, male, NA, stage:, dead, 27 days
1283.3
DO34801
0 years, male, NA, stage:, alive, 626 days
1279.8
DO33488
0 years, male, NA, stage:, alive, 844 days
1271.3
DO34720
0 years, male, NA, stage:, alive, 555 days
1265.4
DO34616
0 years, female, NA, stage:, alive, 666 days
1264.8
DO34240
0 years, male, NA, stage:, dead, 236 days
1240.2
DO33392
0 years, male, NA, stage:, alive, 1014 days
1234.2
DO49166
0 years, female, NA, stage:, alive, 222 days
1205.4
DO34288
0 years, female, NA, stage:, dead, 220 days
1194.8
DO32878
0 years, female, NA, stage:, dead, 260 days
1129.1
DO34504
0 years, male, NA, stage:, dead, 257 days
1113.0
DO33600
0 years, female, NA, stage:, alive, 854 days
1110.7
DO34793
0 years, male, NA, stage:, dead, 427 days
1086.1
DO33472
0 years, female, NA, stage:, dead, 388 days
1059.0
DO33544
0 years, female, NA, stage:, dead, 412 days
1012.8
DO49172
0 years, female, NA, stage:, dead, 1021 days
1001.6
DO34961
0 years, male, NA, stage:, dead, 632 days
981.2
DO33376
0 years, female, NA, stage:, alive, 909 days
951.3
DO33336
0 years, female, NA, stage:, dead, 451 days
940.0
DO49078
0 years, male, NA, stage:, dead, 465 days
904.3
DO34264
0 years, female, NA, stage:, dead, 1144 days
857.3
DO33480
0 years, male, NA, stage:, alive, 1054 days
743.5
DO49087
0 years, female, NA, stage:, dead, 260 days
715.3
DO33400
0 years, female, NA, stage:, alive, 1043 days
714.6
DO49181
0 years, male, NA, stage:, dead, 1534 days
698.6
DO49199
0 years, male, NA, stage:, dead, 1095 days
688.7
DO49184
0 years, male, NA, stage:, dead, 455 days
436.9
DO49198
0 years, female, NA, stage:, dead, 251 days
380.9
DO49074
0 years, male, NA, stage:, dead, 168 days
271.8
DO49175
0 years, male, NA, stage:, dead, 414 days
146.7
DO34336
0 years, female, NA, stage:, alive, 743 days
3.7
Show allShow less
PANCREATIC DUCTAL ADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
235
Samples
Sample ID
Sample type
nRPX
CPT0226610004
Normal
1.3
CPT0019410004
Tumor
1.2
CPT0077880003
Normal
1.2
CPT0001750003
Normal
1.1
CPT0066020003
Normal
1.0
KoreanReference2
Tumor
1.0
CPT0124530003
Normal
1.0
CPT0008800003
Tumor
0.9
CPT0064110003
Normal
0.8
CPT0086210003
Normal
0.7
CPT0123670003
Normal
0.7
CPT0207990004
Normal
0.7
CPT0187550004
Tumor
0.6
CPT0123770003
Normal
0.6
CPT0221250004
Normal
0.6
KoreanReference1
Tumor
0.6
CPT0247000003
Normal
0.6
CPT0125010003
Normal
0.6
CPT0162670004
Normal
0.5
CPT0094130004
Tumor
0.5
CPT0078090004
Tumor
0.5
CPT0246210004
Tumor
0.5
CPT0078000003
Tumor
0.4
C3L-00401-04
Normal
0.4
CPT0011540003
Normal
0.4
CPT0170240004
Tumor
0.4
CPT0246220004
Normal
0.4
CPT0221470005
Tumor
0.4
CPT0183750005
Tumor
0.4
CPT0174800003
Normal
0.4
CPT0246990003
Tumor
0.4
CPT0355180003
Normal
0.4
CPT0093860003
Tumor
0.4
CPT0183770004
Normal
0.4
CPT0011520003
Tumor
0.4
CPT0138990003
Normal
0.3
CPT0064570003
Normal
0.3
CPT0254680003
Tumor
0.3
CPT0077950003
Normal
0.3
CPT0126160004
Tumor
0.3
CPT0093880003
Normal
0.3
CPT0226680005
Tumor
0.3
CPT0077790004
Tumor
0.3
CPT0203850004
Tumor
0.3
CPT0000250017
Tumor
0.3
CPT0123650003
Tumor
0.3
CPT0174700004
Tumor
0.2
CPT0125090003
Tumor
0.2
CPT0241500004
Tumor
0.2
CPT0019300004
Tumor
0.2
CPT0162760003
Tumor
0.2
CPT0241510004
Normal
0.2
CPT0109010004
Tumor
0.2
CPT0088260004
Tumor
0.2
CPT0139000004
Tumor
0.2
CPT0077930004
Tumor
0.2
CPT0123750003
Tumor
0.2
CPT0198420004
Tumor
0.1
CPT0123890003
Normal
0.1
CPT0124360003
Tumor
0.1
CPT0227930004
Tumor
0.1
CPT0086190004
Tumor
0.1
CPT0089720003
Tumor
0.1
CPT0108930003
Tumor
0.1
CPT0246940003
Tumor
0.1
CPT0207980005
Tumor
0.1
CPT0108960003
Normal
0.1
CPT0123860003
Tumor
0.0
CPT0081360004
Tumor
0.0
CPT0241320005
Tumor
0.0
CPT0197440004
Normal
0.0
CPT0123440003
Tumor
0.0
CPT0109300004
Tumor
0.0
CPT0224460004
Tumor
0.0
CPT0237910004
Tumor
0.0
CPT0248410004
Tumor
0.0
CPT0226490004
Tumor
0.0
CPT0238820005
Tumor
0.0
CPT0017040004
Tumor
-0.1
CPT0065640003
Tumor
-0.1
CPT0094630004
Tumor
-0.1
CPT0125130003
Tumor
-0.1
CPT0208550005
Tumor
-0.1
CPT0208840004
Tumor
-0.1
CPT0078250003
Tumor
-0.1
CPT0264150003
Tumor
-0.1
CPT0166760004
Tumor
-0.1
CPT0187930005
Tumor
-0.1
CPT0064520004
Tumor
-0.1
CPT0248590004
Tumor
-0.1
CPT0008750003
Tumor
-0.1
CPT0198910005
Tumor
-0.1
CPT0108400003
Tumor
-0.1
CPT0091680003
Normal
-0.2
CPT0087890004
Tumor
-0.2
CPT0236780005
Tumor
-0.2
CPT0077860003
Tumor
-0.2
CPT0078030003
Normal
-0.2
CPT0207780004
Tumor
-0.2
CPT0088180004
Tumor
-0.2
CPT0089750004
Normal
-0.2
CPT0238530005
Tumor
-0.2
CPT0123460003
Normal
-0.2
CPT0109200004
Tumor
-0.2
CPT0078160004
Tumor
-0.2
CPT0094030003
Tumor
-0.2
CPT0025760003
Normal
-0.2
CPT0246260004
Tumor
-0.2
CPT0209310004
Tumor
-0.2
C3N-00709-06
Normal
-0.2
CPT0217700004
Tumor
-0.2
CPT0063970004
Tumor
-0.2
CPT0347790002
Normal
-0.2
CPT0093930004
Tumor
-0.2
CPT0001730017
Tumor
-0.2
CPT0124980004
Tumor
-0.2
CPT0236560004
Tumor
-0.3
CPT0093980004
Tumor
-0.3
CPT0183450005
Tumor
-0.3
CPT0226570004
Tumor
-0.3
CPT0209640005
Tumor
-0.3
CPT0065570003
Tumor
-0.3
CPT0123990003
Tumor
-0.3
C3L-03632-04
Normal
-0.3
CPT0064090003
Tumor
-0.3
CPT0094180003
Tumor
-0.3
CPT0014040003
Tumor
-0.3
CPT0238040005
Tumor
-0.3
CPT0236360004
Normal
-0.3
CPT0246810003
Tumor
-0.3
CPT0235230004
Tumor
-0.3
CPT0246840003
Tumor
-0.3
CPT0063570003
Tumor
-0.3
CPT0226650004
Tumor
-0.3
CPT0187540004
Normal
-0.3
CPT0186040004
Tumor
-0.3
CPT0237270005
Tumor
-0.3
CPT0237850004
Normal
-0.3
CPT0092630003
Tumor
-0.3
CPT0236710004
Normal
-0.3
CPT0248620003
Normal
-0.3
CPT0208690004
Tumor
-0.3
CPT0094940004
Tumor
-0.3
CPT0226530004
Tumor
-0.4
CPT0162660004
Tumor
-0.4
CPT0081260004
Tumor
-0.4
CPT0246950003
Normal
-0.4
CPT0238710004
Tumor
-0.4
CPT0226760004
Tumor
-0.4
CPT0161990005
Tumor
-0.4
CPT0127270003
Tumor
-0.4
CPT0025750003
Tumor
-0.4
CPT0077810003
Normal
-0.4
CPT0091660003
Tumor
-0.4
CPT0238920004
Tumor
-0.4
CPT0276030003
Normal
-0.4
CPT0247090003
Tumor
-0.4
CPT0208710004
Normal
-0.4
CPT0124000003
Normal
-0.4
CPT0185920004
Tumor
-0.4
CPT0094740004
Tumor
-0.4
CPT0124610004
Tumor
-0.5
CPT0127290003
Normal
-0.5
CPT0081470004
Tumor
-0.5
CPT0198440004
Normal
-0.5
CPT0063580003
Normal
-0.5
CPT0247040003
Tumor
-0.5
CPT0236700005
Tumor
-0.5
C3N-02573-03
Normal
-0.5
CPT0238640004
Normal
-0.5
CPT0170260004
Normal
-0.5
CPT0124410004
Tumor
-0.5
CPT0078180003
Normal
-0.5
CPT0355200003
Normal
-0.5
CPT0218220004
Normal
-0.5
CPT0161770004
Tumor
-0.5
CPT0276010003
Tumor
-0.6
CPT0238610009
Tumor
-0.6
CPT0197420004
Tumor
-0.6
CPT0221240004
Tumor
-0.6
CPT0239920004
Normal
-0.6
CPT0236340004
Tumor
-0.6
CPT0239100009
Tumor
-0.6
CPT0017130003
Normal
-0.6
CPT0237920004
Normal
-0.6
CPT0166780004
Normal
-0.6
CPT0248440003
Normal
-0.6
CPT0238440005
Tumor
-0.6
CPT0246720003
Tumor
-0.6
CPT0237840004
Tumor
-0.7
CPT0208850004
Normal
-0.7
CPT0218200004
Tumor
-0.7
CPT0162780004
Normal
-0.7
CPT0226600004
Tumor
-0.7
KoreanReference3
Tumor
-0.7
CPT0209650004
Normal
-0.7
CPT0239910004
Tumor
-0.7
CPT0198700005
Tumor
-0.7
CPT0236800004
Normal
-0.7
CPT0081060004
Tumor
-0.7
CPT0088320003
Tumor
-0.8
C3L-00189-04
Normal
-0.9
CPT0124500004
Tumor
-0.9
CPT0198930003
Normal
-0.9
CPT0355190003
Normal
-0.9
CPT0347760002
Normal
-0.9
CPT0347880002
Normal
-1.0
CPT0094230004
Tumor
-1.0
CPT0347850002
Normal
-1.0
CPT0083270003
Tumor
-1.0
WU-PDA1
Tumor
-1.0
CPT0238940004
Normal
-1.1
CPT0239140004
Normal
-1.2
CPT0238740004
Normal
-1.4
CPT0347820002
Normal
-1.6
CPT0247050003
Normal
N/A
CPT0108410003
Normal
N/A
CPT0248320003
Normal
N/A
CPT0166650006
Tumor
N/A
CPT0224470004
Normal
N/A
C3L-01687-04
Normal
N/A
CPT0138890003
Normal
N/A
CPT0109110004
Tumor
N/A
WU-pooled sample
Tumor
N/A
CPT0014060003
Normal
N/A
CPT0109130003
Normal
N/A
CPT0138900004
Tumor
N/A
CPT0166680004
Normal
N/A
CPT0094760003
Normal
N/A
CPT0186050004
Normal
N/A
CPT0237290004
Normal
N/A
CPT0264180003
Normal
N/A
CPT0063990003
Normal
N/A
CPT0126200003
Normal
N/A
CPT0198730004
Normal
N/A
Show allShow less
PANCREATIC CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
