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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMSB4X is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1636.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29993.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10342.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8870.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8566.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7556.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7406.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6484.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6306.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6122.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5906.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5884.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5611.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5132.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
4837.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4735.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4621.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4612.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4513.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4348.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4305.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4279.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4170.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4076.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3809.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3766.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3674.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3617.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3442.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3381.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3346.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3167.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3121.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2984.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2932.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2868.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2829.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2800.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2795.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2784.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2733.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2726.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2689.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2677.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2656.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2639.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2623.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2580.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2555.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2544.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2478.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2467.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2461.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2460.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2450.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2448.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2424.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2418.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2399.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2363.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2352.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2315.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2278.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2272.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2250.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2229.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2219.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2210.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2197.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2193.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2124.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2117.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2114.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2092.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2084.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2081.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2068.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2063.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2054.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2047.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2001.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1987.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1978.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1977.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1963.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1939.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1938.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1935.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1934.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1911.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1896.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1887.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1880.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1872.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1860.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1850.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1835.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1823.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1814.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1798.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1797.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1790.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1779.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1773.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1767.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1757.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1726.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1698.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1693.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1687.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1680.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1667.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1666.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1660.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1651.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1636.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1622.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1607.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1607.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1587.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1580.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1577.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1566.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1519.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1517.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1515.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1503.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1501.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1497.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1494.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1483.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1469.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1468.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1453.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1453.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1451.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1437.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1435.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1431.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1421.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1417.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1416.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1412.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1397.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1392.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1390.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1389.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1375.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1339.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1335.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1335.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1323.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1318.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1318.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1315.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1314.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1304.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1302.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1302.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1297.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1294.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1292.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1290.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1284.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1268.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1267.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1265.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1253.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1251.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1228.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1219.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1219.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1216.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1211.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1211.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1194.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1192.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1189.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1188.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1183.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1177.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1171.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1163.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1148.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1147.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1134.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1134.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1128.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1121.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1119.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1112.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1104.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1102.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1101.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1094.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1086.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1084.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1079.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1072.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1060.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1056.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1056.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1054.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1050.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1045.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1038.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1032.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1027.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1027.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1024.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1023.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1011.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1003.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1001.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1001.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1000.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
995.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
991.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
983.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
981.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
981.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
975.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
971.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
956.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
948.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
944.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
939.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
939.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
938.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
928.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
924.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
924.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
919.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
916.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
910.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
908.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
903.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
891.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
877.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
877.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
870.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
864.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
863.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
856.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
845.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
844.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
841.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
837.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
837.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
837.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
835.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
827.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
823.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
819.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
819.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
812.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
809.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
808.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
800.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
794.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
794.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
785.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
785.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
780.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
776.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
775.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
775.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
769.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
762.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
762.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
761.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
754.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
749.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
746.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
737.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
734.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
734.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
732.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
729.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
724.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
723.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
720.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
710.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
706.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
705.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
704.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
702.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
702.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
698.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
696.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
689.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
673.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
672.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
661.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
657.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
653.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
649.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
645.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
643.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
621.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
621.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
617.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
604.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
602.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
602.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
600.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
597.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
597.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
583.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
575.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
570.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
570.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
552.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
544.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
539.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
537.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
530.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
529.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
529.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
524.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
523.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
518.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
518.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
501.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
498.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
493.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
479.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
476.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
473.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
472.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
463.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
459.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
455.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
440.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
439.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
425.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
416.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
412.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
411.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
404.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
404.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
402.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
402.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
389.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
378.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
375.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
365.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
365.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
363.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
360.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
355.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
344.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
333.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
316.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
316.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
315.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
276.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
246.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
244.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
239.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
196.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
185.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMSB4X is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1189.6
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
9774.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7442.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
6713.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6385.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
6323.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5872.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
5574.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5141.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
5079.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
4495.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
4429.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
4271.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
4165.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
3911.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3406.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
3238.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3211.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
3178.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
3127.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
3093.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3087.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
2950.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
2872.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
2567.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
2499.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
2497.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2458.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
2305.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
2259.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2226.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2139.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2098.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
1945.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
1933.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1933.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1915.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1818.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1797.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
1772.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
1768.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
1767.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1756.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
1751.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
1721.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
1721.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
1720.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
1716.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
1567.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1566.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
1547.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
1530.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
1493.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1467.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
1400.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
1399.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
1390.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
1365.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1357.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1346.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1344.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
1343.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
1296.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
1293.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
1289.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
1271.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1260.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
1255.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
1210.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
1191.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
1190.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
1174.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
1171.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1157.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
1142.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1131.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
1124.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
1120.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
1113.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
1106.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1102.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
1091.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
1089.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
1067.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1054.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
1052.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
993.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
969.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
946.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
942.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
935.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
926.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
913.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
908.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
886.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
886.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
852.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
842.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
836.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
830.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
829.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
821.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
816.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
814.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
802.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
797.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
794.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
780.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
771.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
758.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
747.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
744.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
738.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
737.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
731.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
720.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
717.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
701.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
689.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
684.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
684.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
683.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
680.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
670.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
666.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
663.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
662.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
648.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
641.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
638.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
637.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
635.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
625.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
621.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
620.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
600.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
591.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
580.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
572.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
567.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
565.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
563.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
562.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
560.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
558.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
546.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
542.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
534.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
533.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
532.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
525.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
519.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
508.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
498.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
496.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
482.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
481.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
475.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
474.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
470.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
465.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
464.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
461.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
453.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
447.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
428.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
425.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
419.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
409.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
398.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
396.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
396.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
388.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
386.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
364.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
364.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
362.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
361.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
357.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
356.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
355.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
350.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
347.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
345.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
338.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
337.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
332.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
324.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
315.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
313.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
313.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
307.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
297.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
296.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
292.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
288.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
283.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
280.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
270.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
270.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
269.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
267.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
260.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
239.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
238.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
225.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
224.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
223.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
222.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
207.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
202.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
196.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
196.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
186.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
185.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
185.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
183.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
181.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
172.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
170.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
163.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
150.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
131.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
127.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
124.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
121.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
121.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
114.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
96.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
51.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
45.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
44.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
2.5
917
Tumor
2.4
943
Tumor
2.2
492
Normal
2.1
536
Normal
2.1
545
Tumor
2.1
478
Normal
2.0
975
Tumor
1.9
963
Tumor
1.9
978
Normal
1.9
524
Normal
1.8
283
Tumor
1.8
535
Tumor
1.8
498
Normal
1.8
916
Normal
1.7
538
Normal
1.7
966
Normal
1.7
447
Tumor
1.7
355
Tumor
1.7
525
Tumor
1.6
497
Tumor
1.6
661
Tumor
1.6
527
Tumor
1.5
493
Tumor
1.5
724
Normal
1.5
925
Tumor
1.5
516
Normal
1.5
823
Tumor
1.4
415
Tumor
1.4
861
Tumor
1.4
814
Normal
1.4
471
Tumor
1.4
857
Tumor
1.3
1031
Tumor
1.3
697
Tumor
1.3
1015
Tumor
1.3
363
Tumor
1.3
737
Tumor
1.3
553
Tumor
1.2
131
Tumor
1.2
473
Tumor
1.2
483
Tumor
1.2
515
Tumor
1.2
663
Tumor
1.2
491
Tumor
1.2
983
Tumor
1.2
1045
Tumor
1.2
778
Normal
1.1
958
Normal
1.1
817
Tumor
1.1
976
Normal
1.1
926
Normal
1.1
212
Normal
1.1
1028
Normal
1.1
913
Tumor
1.1
984
Normal
1.1
223
Tumor
1.1
918
Normal
1.1
952
Normal
1.1
851
Tumor
1.1
957
Tumor
1.1
852
Normal
1.1
921
Tumor
1.0
224
Normal
1.0
1044
Normal
1.0
716
Normal
1.0
364
Normal
1.0
494
Normal
1.0
1043
Tumor
1.0
863
Tumor
1.0
721
Tumor
1.0
937
Tumor
0.9
874
Normal
0.9
514
Normal
0.9
924
Normal
0.9
785
Tumor
0.9
923
Tumor
0.9
1014
Normal
0.9
528
Normal
0.9
328
Normal
0.9
968
Normal
0.9
461
Tumor
0.9
956
Normal
0.9
518
Normal
0.9
554
Normal
0.9
728
Normal
0.9
922
Normal
0.9
816
Normal
0.9
546
Normal
0.8
285
Tumor
0.8
727
Tumor
0.8
488
Normal
0.8
881
Tumor
0.8
1022
Normal
0.8
1042
Normal
0.8
1026
Normal
0.8
964
Normal
0.8
1027
Tumor
0.8
954
Normal
0.8
713
Tumor
0.8
686
Normal
0.8
982
Normal
0.8
474
Normal
0.8
873
Tumor
0.8
1032
Normal
0.8
951
Tumor
0.8
412
Normal
0.8
715
Tumor
0.8
472
Normal
0.8
284
Normal
0.8
563
Tumor
0.8
1025
Tumor
0.8
1016
Normal
0.7
482
Normal
0.7
685
Tumor
0.7
311
Tumor
0.7
868
Normal
0.7
813
Tumor
0.7
537
Tumor
0.7
526
Normal
0.7
533
Tumor
0.7
698
Normal
0.7
696
Normal
0.7
517
Tumor
0.7
866
Normal
0.7
938
Normal
0.6
416
Normal
0.6
484
Normal
0.6
448
Normal
0.6
723
Tumor
0.6
858
Normal
0.6
756
Normal
0.6
327
Tumor
0.6
944
Normal
0.6
965
Tumor
0.6
955
Tumor
0.6
915
Tumor
0.5
864
Normal
0.5
882
Normal
0.5
738
Normal
0.5
534
Normal
0.5
231
Tumor
0.5
1021
Tumor
0.5
481
Tumor
0.5
714
Normal
0.5
1046
Normal
0.5
786
Normal
0.5
1013
Tumor
0.4
777
Tumor
0.4
953
Tumor
0.4
824
Normal
0.4
862
Normal
0.4
477
Tumor
0.4
286
Normal
0.4
878
Normal
0.4
981
Tumor
0.4
356
Normal
0.4
513
Tumor
0.4
883
Tumor
0.3
695
Tumor
0.3
558
Normal
0.3
671
Tumor
0.3
228
Normal
0.3
1041
Tumor
0.3
745
Tumor
0.3
672
Normal
0.3
912
Normal
0.3
462
Normal
0.3
722
Normal
0.3
867
Tumor
0.3
573
Tumor
0.3
914
Normal
0.3
742
Normal
0.2
884
Normal
0.2
574
Normal
0.2
662
Normal
0.2
755
Tumor
0.2
967
Tumor
0.2
865
Tumor
0.2
744
Normal
0.2
746
Normal
0.2
815
Tumor
0.2
617
Tumor
0.1
572
Normal
0.1
818
Normal
0.1
557
Tumor
0.1
185
Tumor
0.1
977
Tumor
0.1
434
Normal
0.0
444
Normal
0.0
427
Tumor
0.0
192
Normal
0.0
664
Normal
0.0
523
Tumor
-0.1
213
Tumor
-0.1
297
Tumor
-0.1
142
Normal
-0.1
628
Normal
-0.2
188
Normal
-0.2
743
Tumor
-0.2
455
Tumor
-0.2
641
Tumor
-0.2
487
Tumor
-0.2
877
Tumor
-0.2
125
Tumor
-0.2
666
Normal
-0.2
135
Tumor
-0.2
395
Tumor
-0.2
262
Normal
-0.2
386
Normal
-0.3
227
Tumor
-0.3
343
Tumor
-0.3
568
Normal
-0.3
564
Normal
-0.3
162
Normal
-0.3
195
Tumor
-0.3
616
Normal
-0.4
272
Normal
-0.4
567
Tumor
-0.4
411
Tumor
-0.4
385
Tumor
-0.4
636
Normal
-0.4
362
Normal
-0.4
268
Normal
-0.4
312
Normal
-0.4
665
Tumor
-0.4
384
Normal
-0.5
383
Tumor
-0.5
911
Tumor
-0.5
141
Tumor
-0.5
618
Normal
-0.5
146
Normal
-0.5
257
Tumor
-0.5
145
Tumor
-0.5
627
Tumor
-0.6
137
Tumor
-0.6
648
Normal
-0.6
186
Normal
-0.6
396
Normal
-0.6
258
Normal
-0.6
126
Normal
-0.6
218
Normal
-0.7
114
Normal
-0.7
647
Tumor
-0.7
421
Tumor
-0.7
172
Normal
-0.7
388
Normal
-0.7
187
Tumor
-0.7
136
Normal
-0.7
138
Normal
-0.8
456
Normal
-0.8
148
Normal
-0.8
445
Tumor
-0.8
392
Normal
-0.8
642
Normal
-0.8
615
Tumor
-0.8
375
Tumor
-0.8
571
Tumor
-0.8
277
Tumor
-0.8
217
Tumor
-0.8
635
Tumor
-0.9
271
Tumor
-0.9
468
Normal
-0.9
394
Normal
-0.9
124
Normal
-0.9
365
Tumor
-0.9
431
Tumor
-0.9
432
Normal
-0.9
424
Normal
-0.9
232
Normal
-0.9
332
Normal
-0.9
426
Normal
-0.9
368
Normal
-0.9
191
Tumor
-1.0
366
Normal
-1.0
331
Tumor
-1.0
467
Tumor
-1.0
414
Normal
-1.0
451
Tumor
-1.0
413
Tumor
-1.0
422
Normal
-1.0
267
Tumor
-1.0
261
Tumor
-1.0
465
Tumor
-1.0
147
Tumor
-1.0
352
Normal
-1.0
161
Tumor
-1.1
214
Normal
-1.1
436
Normal
-1.1
376
Normal
-1.1
446
Normal
-1.1
387
Tumor
-1.1
466
Normal
-1.1
344
Normal
-1.1
463
Tumor
-1.1
393
Tumor
-1.1
391
Tumor
-1.2
433
Tumor
-1.2
464
Normal
-1.2
423
Tumor
-1.2
298
Normal
-1.3
278
Normal
-1.3
443
Tumor
-1.3
196
Normal
-1.3
314
Normal
-1.3
354
Normal
-1.3
361
Tumor
-1.4
428
Normal
-1.4
313
Tumor
-1.4
741
Tumor
-1.4
452
Normal
-1.4
221
Tumor
-1.5
222
Normal
-1.5
113
Tumor
-1.5
171
Tumor
-1.5
353
Tumor
-1.5
132
Normal
-1.6
342
Normal
-1.6
425
Tumor
-1.6
111
Normal
-1.6
367
Tumor
-1.6
358
Normal
-1.6
127
Tumor
-1.7
435
Tumor
-1.8
341
Tumor
-1.9
128
Normal
-1.9
112
Tumor
-1.9
123
Tumor
-2.0
351
Tumor
-2.1
357
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.