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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMSB4X is not prognostic in Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3610.3
Number of samples
283
Samples
Sample
Description
TPM
TCGA-MA-AA43-01A
0 years, female, white, stage:Stage IIIB, alive, 346 days
17625.2
TCGA-VS-A9UJ-01A
0 years, female, stage:Stage IIB, dead, 52 days
14357.6
TCGA-C5-A2LS-01A
0 years, female, white, stage:Stage IB, alive, 1345 days
13652.5
TCGA-EK-A3GK-01A
0 years, female, white, stage:Stage IB, alive, 15 days
11990.0
TCGA-VS-A9UB-01A
0 years, female, stage:Stage IIB, alive, 911 days
11761.6
TCGA-Q1-A73R-01A
0 years, female, white, stage:Stage I, alive, 567 days
11743.4
TCGA-C5-A7UC-01A
0 years, female, white, stage:Stage IB, dead, 523 days
11529.7
TCGA-C5-A2LT-01A
0 years, female, white, stage:Stage IB, alive, 2226 days
11321.7
TCGA-EA-A5FO-01A
0 years, female, white, stage:Stage IB, alive, 815 days
10891.7
TCGA-EA-A4BA-01A
0 years, female, white, stage:Stage IB, alive, 755 days
10857.0
TCGA-VS-A8EK-01A
0 years, female, white, stage:Stage IVA, dead, 829 days
10588.1
TCGA-EK-A2R8-01A
0 years, female, white, stage:Stage IB, alive, 44 days
10344.1
TCGA-DS-A1OD-01A
0 years, female, white, stage:Stage IB, alive, 3874 days
9243.1
TCGA-HM-A3JJ-01A
0 years, female, black or african american, stage:Stage IB, dead, 659 days
8912.5
TCGA-EK-A2RL-01A
0 years, female, black or african american, stage:Stage IB, dead, 1453 days
8597.6
TCGA-EX-A3L1-01A
0 years, female, white, stage:Stage IIA, alive, 463 days
8301.4
TCGA-RA-A741-01A
0 years, female, white, stage:Stage IIB, alive, 444 days
8136.5
TCGA-MU-A5YI-01A
0 years, female, black or african american, stage:Stage IA, alive, 1053 days
8111.0
TCGA-C5-A7CH-01A
0 years, female, white, stage:Stage IIB, alive, 4694 days
8093.3
TCGA-VS-A9UR-01A
0 years, female, white, stage:Stage IIA, alive, 793 days
8044.5
TCGA-C5-A1MQ-01A
0 years, female, white, stage:Stage IIA, alive, 1031 days
8035.6
TCGA-MY-A5BE-01A
0 years, female, black or african american, stage:Stage IB, alive, 1066 days
8027.3
TCGA-C5-A1MK-01A
0 years, female, white, stage:Stage IIIB, dead, 74 days
8015.8
TCGA-DS-A0VM-01A
0 years, female, white, stage:Stage IB, alive, 3589 days
7985.4
TCGA-VS-A94Z-01A
0 years, female, white, stage:Stage IIB, alive, 1015 days
7801.6
TCGA-4J-AA1J-01A
0 years, female, white, stage:Stage IB, alive, 542 days
7694.1
TCGA-MA-AA42-01A
0 years, female, white, stage:Stage IIB, alive, 259 days
7604.1
TCGA-EK-A2H1-01A
0 years, female, white, stage:Stage IB, alive, 799 days
7577.0
TCGA-LP-A5U3-01A
0 years, female, asian, stage:Stage IB, alive, 25 days
7575.5
TCGA-Q1-A5R2-01A
0 years, female, white, stage:'--, alive, 499 days
7496.5
TCGA-FU-A770-01A
0 years, female, white, stage:Stage IIIB, alive, 34 days
7421.9
TCGA-C5-A1M6-01A
0 years, female, white, stage:Stage IIB, dead, 955 days
7380.9
TCGA-BI-A20A-01A
0 years, female, white, stage:Stage IB, alive, 720 days
7329.2
TCGA-R2-A69V-01A
0 years, female, white, stage:Stage IB, alive, 596 days
7313.2
TCGA-C5-A8YT-01A
0 years, female, white, stage:Stage IB, dead, 633 days
7207.2
TCGA-C5-A2M1-01A
0 years, female, white, stage:Stage IB, alive, 1169 days
7182.6
TCGA-FU-A3EO-01A
0 years, female, white, stage:Stage IIB, alive, 490 days
6994.3
TCGA-Q1-A73S-01A
0 years, female, white, stage:Stage IB, alive, 688 days
6967.4
TCGA-C5-A1M9-01A
0 years, female, white, stage:Stage IB, dead, 1065 days
6936.7
TCGA-JX-A5QV-01A
0 years, female, white, stage:Stage IB, alive, 636 days
6837.0
TCGA-VS-A9V4-01A
0 years, female, white, stage:Stage IVA, dead, 132 days
6745.9
TCGA-VS-A94Y-01A
0 years, female, white, stage:Stage IIB, dead, 144 days
6565.5
TCGA-VS-A952-01A
0 years, female, white, stage:Stage IB, alive, 1778 days
6547.0
TCGA-Q1-A73O-01A
0 years, female, stage:Stage IB, alive, 428 days
6443.4
TCGA-IR-A3LK-01A
0 years, female, white, stage:Stage IB, dead, 908 days
6361.8
TCGA-DG-A2KL-01A
0 years, female, stage:Stage IIA, alive, 1367 days
6322.1
TCGA-VS-A8QM-01A
0 years, female, stage:Stage IVB, dead, 951 days
6259.6
TCGA-DS-A1OB-01A
0 years, female, white, stage:Stage IB, dead, 861 days
6200.7
TCGA-DS-A5RQ-01A
0 years, female, white, stage:Stage IB, alive, 512 days
6160.6
TCGA-MA-AA3Z-01A
0 years, female, white, stage:Stage IB, alive, 595 days
6124.7
TCGA-XS-A8TJ-01A
0 years, female, black or african american, stage:Stage IB, alive, 890 days
6089.2
TCGA-EA-A3QD-01A
0 years, female, white, stage:Stage IIIB, alive, 397 days
6066.1
TCGA-DG-A2KM-01A
0 years, female, stage:Stage IB, alive, 1946 days
6040.9
TCGA-EK-A2RM-01A
0 years, female, white, stage:Stage IB, alive, 50 days
6037.8
TCGA-EK-A2PG-01A
0 years, female, black or african american, stage:'--, alive, 46 days
6017.3
TCGA-C5-A8XI-01A
0 years, female, black or african american, stage:Stage IB, alive, 254 days
5997.7
TCGA-2W-A8YY-01A
0 years, female, white, stage:Stage IB, alive, 533 days
5981.2
TCGA-C5-A8XK-01A
0 years, female, black or african american, stage:'--, alive, 3039 days
5848.6
TCGA-IR-A3LF-01A
0 years, female, white, stage:Stage IB, alive, 2949 days
5755.5
TCGA-C5-A7CG-01A
0 years, female, white, stage:Stage IB, alive, 6408 days
5755.1
TCGA-FU-A57G-01A
0 years, female, white, stage:Stage IB, alive, 1078 days
5661.4
TCGA-C5-A1MN-01A
0 years, female, white, stage:Stage IIIB, dead, 1245 days
5639.2
TCGA-DS-A0VL-01A
0 years, female, white, stage:Stage IB, dead, 1692 days
5464.3
TCGA-EA-A3Y4-01A
0 years, female, white, stage:Stage IB, alive, 1122 days
5442.6
TCGA-JX-A3Q0-01A
0 years, female, black or african american, stage:Stage III, alive, 6375 days
5374.9
TCGA-IR-A3LI-01A
0 years, female, white, stage:Stage IVB, alive, 2493 days
5369.8
TCGA-FU-A3HY-01A
0 years, female, white, stage:Stage IB, alive, 954 days
5367.3
TCGA-VS-A9UQ-01A
0 years, female, stage:Stage IB, alive, 1263 days
5307.3
TCGA-FU-A3YQ-01A
0 years, female, white, stage:Stage IB, alive, 861 days
5305.0
TCGA-LP-A4AX-01A
0 years, female, asian, stage:Stage IB, alive, 380 days
5279.7
TCGA-MU-A51Y-01A
0 years, female, white, stage:Stage IIA, alive, 854 days
5277.4
TCGA-VS-A950-01A
0 years, female, stage:Stage IIIA, alive, 1221 days
5272.6
TCGA-EX-A1H5-01A
0 years, female, black or african american, stage:Stage IIB, alive, 619 days
5251.3
TCGA-VS-A8QF-01A
0 years, female, white, stage:Stage IIB, alive, 1800 days
5246.0
TCGA-DS-A7WF-01A
0 years, female, stage:Stage IB, dead, 492 days
5161.5
TCGA-MA-AA3X-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 617 days
5113.4
TCGA-EK-A2R9-01A
0 years, female, white, stage:Stage IB, alive, 4 days
5106.8
TCGA-IR-A3LB-01A
0 years, female, white, stage:Stage IB, dead, 2032 days
5099.2
TCGA-C5-A7CO-01A
0 years, female, white, stage:Stage IB, alive, 4482 days
4989.1
TCGA-MY-A913-01A
0 years, female, black or african american, stage:Stage IIA, alive, 524 days
4971.7
TCGA-VS-AA62-01A
0 years, female, white, stage:Stage IIB, dead, 469 days
4848.4
TCGA-EA-A411-01A
0 years, female, white, stage:Stage IB, alive, 747 days
4841.7
TCGA-VS-A9UI-01A
0 years, female, white, stage:Stage IIB, dead, 1372 days
4824.0
TCGA-VS-A8QH-01A
0 years, female, white, stage:Stage IB, dead, 1210 days
4820.3
TCGA-DG-A2KH-01A
0 years, female, stage:Stage IB, alive, 34 days
4803.4
TCGA-IR-A3LL-01A
0 years, female, white, stage:Stage IB, alive, 1106 days
4792.6
TCGA-FU-A23L-01A
0 years, female, white, stage:Stage IIA, alive, 725 days
4755.6
TCGA-EA-A6QX-01A
0 years, female, asian, stage:Stage IIIB, alive, 730 days
4701.3
TCGA-C5-A8XH-01A
0 years, female, white, stage:Stage IB, dead, 1394 days
4620.3
TCGA-VS-A958-01A
0 years, female, white, stage:Stage IIB, alive, 1525 days
4600.6
TCGA-C5-A7X8-01A
0 years, female, white, stage:Stage IB, alive, 83 days
4589.7
TCGA-EK-A2RO-01A
0 years, female, american indian or alaska native, stage:Stage IIB, alive, 2 days
4575.6
TCGA-Q1-A5R3-01A
0 years, female, white, stage:'--, alive, 485 days
4539.9
TCGA-C5-A1MH-01A
0 years, female, white, stage:Stage IIIB, dead, 1186 days
4539.9
TCGA-VS-A9UD-01A
0 years, female, white, stage:Stage IIIA, alive, 739 days
4529.9
TCGA-Q1-A6DV-01A
0 years, female, asian, stage:Stage IB, alive, 491 days
4515.2
TCGA-EX-A449-01A
0 years, female, white, stage:Stage IVB, alive, 447 days
4453.9
TCGA-EA-A439-01A
0 years, female, asian, stage:Stage IIA, alive, 965 days
4377.2
TCGA-EA-A410-01A
0 years, female, white, stage:Stage IIA, alive, 803 days
4376.9
TCGA-EK-A2RC-01A
0 years, female, stage:Stage IB, alive, 129 days
4354.9
TCGA-DS-A1OA-01A
0 years, female, asian, stage:Stage IB, dead, 879 days
4345.9
TCGA-DS-A0VN-01A
0 years, female, white, stage:Stage IB, alive, 3609 days
4315.4
TCGA-VS-A9UZ-01A
0 years, female, white, stage:Stage IB, alive, 2044 days
4287.4
TCGA-C5-A2M2-01A
0 years, female, white, stage:Stage IB, dead, 1011 days
4272.1
TCGA-JW-A5VL-01A
0 years, female, american indian or alaska native, stage:Stage IB, alive, 474 days
4250.4
TCGA-FU-A3TQ-01A
0 years, female, white, stage:Stage IIIB, alive, 795 days
4167.6
TCGA-ZX-AA5X-01A
0 years, female, white, stage:Stage IIIB, alive, 119 days
4108.5
TCGA-VS-A9UH-01A
0 years, female, black or african american, stage:Stage IVA, alive, 1427 days
4097.2
TCGA-VS-A8Q9-01A
0 years, female, white, stage:Stage IB, alive, 1630 days
4026.2
TCGA-WL-A834-01A
0 years, female, white, stage:'--, alive, 791 days
4018.0
TCGA-FU-A40J-01A
0 years, female, white, stage:Stage IIIB, alive, 426 days
4009.1
TCGA-BI-A0VS-01A
0 years, female, white, stage:Stage IB, alive, 1735 days
4005.0
TCGA-JW-A69B-01A
0 years, female, white, stage:Stage IB, alive, 863 days
4004.7
TCGA-C5-A1BL-01A
0 years, female, white, stage:Stage IB, alive, 5271 days
3993.2
TCGA-C5-A8ZZ-01A
0 years, female, white, stage:Stage IIB, alive, 636 days
3944.3
TCGA-EA-A78R-01A
0 years, female, asian, stage:Stage IB, alive, 410 days
3925.8
TCGA-C5-A1BM-01A
0 years, female, black or african american, stage:Stage IB, dead, 2520 days
3922.2
TCGA-EX-A69L-01A
0 years, female, asian, stage:Stage IB, alive, 602 days
3894.4
TCGA-VS-A9UY-01A
0 years, female, stage:Stage IVB, dead, 555 days
3876.6
TCGA-EK-A2PK-01A
0 years, female, white, stage:Stage IB, alive, 12 days
3875.6
TCGA-EA-A3QE-01A
0 years, female, white, stage:Stage IB, alive, 761 days
3875.1
TCGA-EK-A2GZ-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 383 days
3852.8
TCGA-EK-A2RK-01A
0 years, female, white, stage:Stage IA, alive, 13 days
3843.9
TCGA-BI-A0VR-01A
0 years, female, white, stage:Stage IIIB, alive, 1505 days
3824.7
TCGA-EA-A5ZD-01A
0 years, female, asian, stage:Stage IB, alive, 830 days
3759.3
TCGA-C5-A907-01A
0 years, female, white, stage:Stage IB, alive, 448 days
3758.4
TCGA-Q1-A6DW-01A
0 years, female, white, stage:Stage I, alive, 534 days
3741.9
TCGA-Q1-A73P-01A
0 years, female, white, stage:Stage IB, alive, 483 days
3734.8
TCGA-C5-A905-01A
0 years, female, black or african american, stage:Stage IB, alive, 4879 days
3699.0
TCGA-C5-A3HL-01A
0 years, female, white, stage:Stage IB, alive, 621 days
3672.0
TCGA-VS-A8EL-01A
0 years, female, black or african american, stage:Stage IIB, alive, 1992 days
3560.9
TCGA-EA-A97N-01A
0 years, female, white, stage:Stage IB, alive, 11 days
3552.7
TCGA-EA-A44S-01A
0 years, female, white, stage:Stage IIIB, alive, 369 days
3532.7
TCGA-JX-A3Q8-01A
0 years, female, asian, stage:Stage IB, alive, 1357 days
3498.7
TCGA-C5-A902-01A
0 years, female, black or african american, stage:Stage IB, alive, 149 days
3451.9
TCGA-HM-A4S6-01A
0 years, female, white, stage:Stage IIIB, alive, 454 days
3412.7
TCGA-EK-A2RE-01A
0 years, female, white, stage:Stage IIA, alive, 57 days
3274.0
TCGA-EA-A50E-01A
0 years, female, asian, stage:Stage IVA, dead, 227 days
3253.3
TCGA-C5-A1MI-01A
0 years, female, white, stage:Stage IB, dead, 1083 days
3208.0
TCGA-JW-A5VK-01A
0 years, female, black or african american, stage:Stage IB, alive, 623 days
3161.6
TCGA-FU-A5XV-01A
0 years, female, white, stage:Stage IIIB, alive, 321 days
3141.1
TCGA-ZJ-AAX4-01A
0 years, female, white, stage:Stage II, alive, 21 days
3104.1
TCGA-DR-A0ZL-01A
0 years, female, asian, stage:Stage IB, alive, 2669 days
3103.9
TCGA-C5-A7UE-01A
0 years, female, white, stage:Stage IB, alive, 4738 days
3085.7
TCGA-EX-A8YF-01A
0 years, female, white, stage:Stage IB, alive, 473 days
3041.1
TCGA-DG-A2KK-01A
0 years, female, stage:Stage IIIB, alive, 2496 days
3013.1
TCGA-ZJ-A8QR-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage I, dead, 582 days
2988.9
TCGA-EK-A3GN-01A
0 years, female, white, stage:Stage IIIB, alive, 27 days
2916.2
TCGA-DS-A3LQ-01A
0 years, female, stage:Stage IIIB, alive, 699 days
2914.5
TCGA-VS-A9U6-01A
0 years, female, white, stage:Stage IVB, alive, 1320 days
2913.9
TCGA-C5-A7XC-01A
0 years, female, white, stage:Stage IB, alive, 1551 days
2909.1
TCGA-HG-A2PA-01A
0 years, female, white, stage:Stage IB, dead, 773 days
2909.1
TCGA-EK-A2RJ-01A
0 years, female, white, stage:Stage IB, alive, 53 days
2899.4
TCGA-HM-A6W2-01A
0 years, female, black or african american, stage:Stage IVB, alive, 287 days
2838.8
TCGA-FU-A3WB-01A
0 years, female, white, stage:Stage IIA, alive, 491 days
2813.2
TCGA-C5-A1M8-01A
0 years, female, white, stage:Stage IB, alive, 919 days
2807.1
TCGA-LP-A4AU-01A
0 years, female, asian, stage:Stage IIIB, alive, 343 days
2777.1
TCGA-Q1-A73Q-01A
0 years, female, white, stage:Stage I, alive, 284 days
2776.7
TCGA-VS-A9V3-01A
0 years, female, white, stage:Stage IVB, alive, 540 days
2694.1
TCGA-VS-A9V2-01A
0 years, female, white, stage:Stage IB, alive, 555 days
2644.5
TCGA-VS-A8QA-01A
0 years, female, stage:Stage IB, alive, 1099 days
2584.5
TCGA-C5-A8XJ-01A
0 years, female, white, stage:Stage IB, alive, 4467 days
2565.1
TCGA-MY-A5BF-01A
0 years, female, white, stage:Stage IIA, alive, 634 days
2558.8
TCGA-VS-A9UO-01A
0 years, female, white, stage:Stage IIB, alive, 1456 days
2550.3
TCGA-VS-A9U7-01A
0 years, female, white, stage:Stage IB, alive, 1472 days
2457.5
TCGA-C5-A1M7-01A
0 years, female, white, stage:Stage IB, alive, 1409 days
2393.4
TCGA-EK-A2RB-01A
0 years, female, white, stage:Stage IVB, alive, 9 days
2374.6
TCGA-EA-A3HR-01A
0 years, female, white, stage:Stage II, alive, 940 days
2326.4
TCGA-VS-A8EG-01A
0 years, female, stage:Stage IB, alive, 1386 days
2312.4
TCGA-EK-A2IR-01A
0 years, female, white, stage:Stage IB, alive, 3442 days
2268.8
TCGA-MU-A8JM-01A
0 years, female, white, stage:Stage IB, alive, 607 days
2259.6
TCGA-EK-A2H0-01A
0 years, female, white, stage:Stage IIB, alive, 1847 days
2175.5
TCGA-VS-A9UC-01A
0 years, female, stage:Stage IIB, alive, 825 days
2121.6
TCGA-C5-A7CK-01A
0 years, female, white, stage:Stage IVA, dead, 4086 days
2117.1
TCGA-EK-A3GJ-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IB, alive, 3 days
2052.4
TCGA-C5-A8YQ-01A
0 years, female, white, stage:Stage IB, dead, 715 days
2048.4
TCGA-UC-A7PG-01A
0 years, female, white, stage:Stage IIIB, dead, 370 days
2020.1
TCGA-VS-A9UM-01A
0 years, female, black or african american, stage:Stage IVB, dead, 829 days
2010.7
TCGA-DR-A0ZM-01A
0 years, female, white, stage:Stage IIIB, alive, 1791 days
2001.2
TCGA-IR-A3LA-01A
0 years, female, white, stage:Stage IB, alive, 4172 days
1869.4
TCGA-EA-A1QS-01A
0 years, female, white, stage:Stage IB, alive, 1203 days
1867.8
TCGA-C5-A7UH-01A
0 years, female, white, stage:Stage IIIB, alive, 3988 days
1858.9
TCGA-VS-A9UV-01A
0 years, female, stage:Stage IVA, dead, 104 days
1819.1
TCGA-C5-A7UI-01A
0 years, female, black or african american, stage:Stage IB, dead, 2888 days
1784.8
TCGA-EA-A43B-01A
0 years, female, white, stage:Stage IB, alive, 791 days
1706.9
TCGA-VS-A8EC-01A
0 years, female, white, stage:Stage IIIB, alive, 1415 days
1691.3
TCGA-VS-A8EJ-01A
0 years, female, white, stage:Stage IIB, dead, 607 days
1674.2
TCGA-EK-A2IP-01A
0 years, female, white, stage:Stage IB, alive, 202 days
1670.0
TCGA-C5-A1MF-01A
0 years, female, white, stage:Stage IB, alive, 1617 days
1664.0
TCGA-ZJ-AAXA-01A
0 years, female, white, stage:Stage IB, alive, 43 days
1656.4
TCGA-VS-A953-01A
0 years, female, stage:Stage IVA, dead, 477 days
1639.6
TCGA-JW-A5VG-01A
0 years, female, american indian or alaska native, stage:Stage IIA, alive, 834 days
1432.2
TCGA-DS-A0VK-01A
0 years, female, white, stage:Stage IB, dead, 1118 days
1288.4
TCGA-VS-A8EI-01A
0 years, female, white, stage:Stage IIB, alive, 729 days
1283.2
TCGA-EA-A3HT-01A
0 years, female, white, stage:Stage IB, alive, 954 days
1239.5
TCGA-C5-A2LX-01A
0 years, female, white, stage:Stage IB, alive, 2526 days
1232.1
TCGA-JW-AAVH-01A
0 years, female, white, stage:Stage IB, alive, 552 days
1192.4
TCGA-VS-A9UL-01A
0 years, female, white, stage:Stage IIIB, dead, 442 days
1125.7
TCGA-EK-A2RA-01A
0 years, female, stage:Stage IIA, alive, 1246 days
1121.2
TCGA-EA-A1QT-01A
0 years, female, white, stage:Stage IB, alive, 1243 days
1110.7
TCGA-EK-A2PM-01A
0 years, female, white, stage:Stage IIB, alive, 18 days
1109.5
TCGA-EK-A2PL-01A
0 years, female, white, stage:Stage IIIB, alive, 13 days
1049.2
TCGA-VS-A9V0-01A
0 years, female, stage:Stage IB, alive, 573 days
1038.9
TCGA-C5-A1ME-01A
0 years, female, white, stage:Stage IB, alive, 1756 days
1025.1
TCGA-IR-A3LC-01A
0 years, female, white, stage:Stage IB, alive, 3935 days
986.8
TCGA-Q1-A5R1-01A
0 years, female, white, stage:Stage IB, alive, 474 days
980.5
TCGA-EA-A3HU-01A
0 years, female, white, stage:Stage II, alive, 1013 days
979.9
TCGA-VS-A8Q8-01A
0 years, female, white, stage:Stage IB, dead, 978 days
971.6
TCGA-LP-A4AW-01A
0 years, female, asian, stage:Stage IA, alive, 27 days
966.5
TCGA-C5-A8YR-01A
0 years, female, white, stage:Stage IB, dead, 837 days
958.0
TCGA-VS-A94W-01A
0 years, female, white, stage:Stage IIB, alive, 1243 days
954.8
TCGA-EA-A556-01A
0 years, female, white, stage:Stage IB, alive, 453 days
923.5
TCGA-C5-A0TN-01A
0 years, female, black or african american, stage:Stage IB, dead, 348 days
909.6
TCGA-LP-A5U2-01A
0 years, female, asian, stage:Stage IIIB, alive, 9 days
906.3
TCGA-EK-A2R7-01A
0 years, female, white, stage:Stage IB, alive, 27 days
870.2
TCGA-IR-A3LH-01A
0 years, female, black or african american, stage:Stage IIA, alive, 2394 days
847.9
TCGA-C5-A7X5-01A
0 years, female, black or african american, stage:Stage IVB, dead, 414 days
841.4
TCGA-DS-A1OC-01A
0 years, female, white, stage:Stage IB, alive, 376 days
840.8
TCGA-C5-A2LY-01A
0 years, female, white, stage:Stage IB, alive, 2383 days
830.7
TCGA-EA-A5ZF-01A
0 years, female, asian, stage:Stage IB, alive, 828 days
817.8
TCGA-C5-A7X3-01A
0 years, female, white, stage:Stage IIIB, dead, 284 days
804.3
TCGA-FU-A3HZ-01A
0 years, female, white, stage:Stage IIA, alive, 1103 days
795.0
TCGA-JX-A3PZ-01A
0 years, female, white, stage:Stage IB, dead, 642 days
776.0
TCGA-FU-A23K-01A
0 years, female, white, stage:Stage IIIB, alive, 372 days
774.3
TCGA-VS-A94X-01A
0 years, female, black or african american, stage:Stage IIB, dead, 506 days
760.4
TCGA-C5-A1M5-01A
0 years, female, white, stage:Stage IB, dead, 2052 days
748.9
TCGA-EK-A2RN-01A
0 years, female, white, stage:Stage IB, alive, 71 days
742.2
TCGA-MA-AA3W-01A
0 years, female, white, stage:Stage IB, alive, 685 days
733.7
TCGA-EX-A69M-01A
0 years, female, white, stage:Stage IB, dead, 253 days
703.6
TCGA-C5-A1BJ-01A
0 years, female, white, stage:Stage IIB, alive, 4385 days
702.3
TCGA-IR-A3L7-01A
0 years, female, white, stage:Stage IB, alive, 4483 days
693.2
TCGA-MA-AA3Y-01A
0 years, female, white, stage:Stage IB, alive, 542 days
691.7
TCGA-C5-A2LV-01A
0 years, female, black or african american, stage:Stage IB, alive, 2234 days
676.0
TCGA-DS-A1O9-01A
0 years, female, white, stage:Stage IVA, dead, 266 days
657.7
TCGA-VS-A959-01A
0 years, female, stage:Stage IIB, alive, 1561 days
621.8
TCGA-C5-A7CJ-01A
0 years, female, white, stage:Stage IIA, dead, 3097 days
617.3
TCGA-DG-A2KJ-01A
0 years, female, stage:Stage IIIB, alive, 2893 days
615.5
TCGA-DS-A7WH-01A
0 years, female, white, stage:Stage IB, alive, 533 days
613.6
TCGA-HM-A3JK-01A
0 years, female, white, stage:Stage IIA, alive, 632 days
597.6
TCGA-VS-A9V5-01A
0 years, female, white, stage:Stage IIB, dead, 494 days
593.7
TCGA-GH-A9DA-01A
0 years, female, white, stage:Stage IB, alive, 540 days
586.8
TCGA-UC-A7PD-01A
0 years, female, american indian or alaska native, stage:Stage IB, dead, 355 days
582.7
TCGA-C5-A7CM-01A
0 years, female, white, stage:Stage IB, alive, 619 days
571.0
TCGA-VS-A9UP-01A
0 years, female, stage:Stage IIA, alive, 1444 days
568.2
TCGA-LP-A7HU-01A
0 years, female, asian, stage:Stage II, alive, 406 days
505.0
TCGA-PN-A8MA-01A
0 years, female, black or african american, stage:Stage IIB, alive, 90 days
501.7
TCGA-JW-A5VI-01A
0 years, female, american indian or alaska native, stage:Stage IIB, alive, 747 days
501.0
TCGA-C5-A3HF-01A
0 years, female, white, stage:Stage IB, dead, 543 days
500.3
TCGA-C5-A3HE-01A
0 years, female, white, stage:Stage IB, alive, 548 days
493.9
TCGA-C5-A1MJ-01A
0 years, female, white, stage:Stage IB, dead, 14 days
491.7
TCGA-JW-A5VJ-01A
0 years, female, american indian or alaska native, stage:Stage IIB, alive, 652 days
484.3
TCGA-VS-A8EB-01A
0 years, female, white, stage:Stage IIIB, dead, 305 days
480.6
TCGA-UC-A7PF-01A
0 years, female, stage:Stage IB, dead, 2859 days
473.6
TCGA-MA-AA41-01A
0 years, female, white, stage:Stage IIB, alive, 279 days
473.1
TCGA-Q1-A6DT-01A
0 years, female, white, stage:Stage I, dead, 275 days
468.7
TCGA-VS-A9U5-01A
0 years, female, white, stage:Stage IIB, alive, 1535 days
430.1
TCGA-FU-A2QG-01A
0 years, female, white, stage:Stage IB, alive, 579 days
423.3
TCGA-EA-A5O9-01A
0 years, female, white, stage:Stage IB, alive, 788 days
422.0
TCGA-C5-A1MP-01A
0 years, female, black or african american, stage:Stage IB, alive, 109 days
415.2
TCGA-EA-A3HQ-01A
0 years, female, white, stage:Stage II, alive, 1136 days
414.2
TCGA-C5-A2LZ-01A
0 years, female, white, stage:Stage IIIB, dead, 3046 days
404.4
TCGA-C5-A1ML-01A
0 years, female, white, stage:Stage IB, dead, 636 days
398.8
TCGA-EA-A5ZE-01A
0 years, female, asian, stage:Stage IB, alive, 829 days
396.2
TCGA-UC-A7PI-01A
0 years, female, white, stage:Stage IB, alive, 2114 days
387.0
TCGA-JW-A852-01A
0 years, female, white, stage:Stage IIB, dead, 252 days
383.9
TCGA-VS-A9V1-01A
0 years, female, white, stage:Stage IVB, dead, 157 days
383.0
TCGA-VS-A9UT-01A
0 years, female, asian, stage:Stage IB, alive, 482 days
380.4
TCGA-C5-A7CL-01A
0 years, female, white, stage:Stage IIIB, dead, 471 days
370.6
TCGA-FU-A3NI-01A
0 years, female, white, stage:Stage IB, dead, 638 days
369.6
TCGA-DS-A7WI-01A
0 years, female, white, stage:Stage IIA, dead, 252 days
363.8
TCGA-ZJ-AAXU-01A
0 years, female, white, stage:Stage IIB, alive, 5 days
362.2
TCGA-VS-A954-01A
0 years, female, stage:Stage IIIB, alive, 1714 days
356.8
TCGA-JW-A5VH-01A
0 years, female, american indian or alaska native, stage:Stage IVB, dead, 100 days
351.4
TCGA-VS-A8QC-01A
0 years, female, white, stage:Stage IVA, dead, 350 days
349.8
TCGA-MY-A5BD-01A
0 years, female, white, stage:Stage IIB, alive, 1667 days
349.2
TCGA-FU-A3TX-01A
0 years, female, stage:Stage IB, alive, 45 days
334.6
TCGA-VS-A957-01A
0 years, female, white, stage:Stage IB, alive, 1688 days
324.1
TCGA-VS-A9UU-01A
0 years, female, stage:Stage IIB, alive, 442 days
296.5
TCGA-ZJ-A8QQ-01A
0 years, female, white, stage:Stage IIB, alive, 2056 days
293.8
TCGA-EK-A2PI-01A
0 years, female, white, stage:Stage IIIB, alive, 586 days
292.0
TCGA-EA-A3HS-01A
0 years, female, white, stage:Stage IB, alive, 959 days
254.3
TCGA-VS-A8EH-01A
0 years, female, stage:Stage IIIB, alive, 986 days
218.0
TCGA-C5-A901-01A
0 years, female, white, stage:'--, alive, 518 days
199.2
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CERVICAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.