BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.9 nTPM
HPA Brain:59.7 nTPM
GTEx:20.9 nTPM
FANTOM5:66.2 Scaled Tags Per Million
Pig:66.5 nTPM
Mouse:89.1 nTPM
Allen mouse:5.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 59.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 50.4
2846 Female, age 79, unknown 60.7
1857 Female, age 85, left hemisphere 57.8
2290 Female, age 72, unknown 51.7
1781 Male, age 74, unknown 51.6
2288 Male, age 75, left hemisphere 51.1
1854 Male, age 80, left hemisphere 47.7
2481 Female, age 94, left hemisphere 46.3
2289 Male, age 61, right hemisphere 36.3
Globus pallidus, externus
nTPM: 37.7
2772 Female, age 79, unknown 44.4
1996 Male, age 80, right hemisphere 43.8
2395 Male, age 75, both hemispheres 42.3
2646 Male, age 61, right hemisphere 31.4
2567 Female, age 72, unknown 26.6
Globus pallidus, internus
nTPM: 38.9
2287 Male, age 75, right hemisphere 49.8
2483 Female, age 94, right hemisphere 44.6
2778 Female, age 91, both hemispheres 42.5
1818 Male, age 74, unknown 38.5
2037 Male, age 80, right hemisphere 33.9
2566 Female, age 72, unknown 32.8
2111 Female, age 85, right hemisphere 30.1
Nucleus accumbens
nTPM: 54.0
2698 Female, age 72, unknown 64.7
1856 Female, age 91, right hemisphere 63.4
1783 Male, age 74, unknown 55.4
2391 Female, age 94, left hemisphere 54.4
2824 Male, age 61, right hemisphere 52.9
1806 Female, age 85, left hemisphere 51.6
2286 Male, age 75, left hemisphere 48.5
2732 Male, age 80, right hemisphere 40.7
Nucleus basalis of Meynert
nTPM: 42.7
2821 Male, age 75, both hemispheres 47.7
2393 Male, age 80, right hemisphere 44.7
2484 Female, age 94, left hemisphere 44.5
2569 Male, age 61, both hemispheres 33.8
Nucleus of the diagonal band
nTPM: 59.7
1812 Female, age 91, both hemispheres 69.5
2195 Female, age 85, both hemispheres 62.8
2775 Male, age 80, right hemisphere 61.4
2029 Male, age 61, right hemisphere 53.6
1979 Male, age 74, unknown 51.0
Putamen
nTPM: 48.9
1838 Male, age 80, right hemisphere 58.6
2466 Female, age 79, unknown 55.8
1937 Female, age 91, right hemisphere 54.2
2482 Female, age 94, left hemisphere 53.2
1829 Male, age 74, unknown 48.7
2647 Male, age 75, left hemisphere 41.5
2489 Female, age 72, unknown 30.5
Septal nuclei
nTPM: 51.6
2031 Female, age 72, unknown 70.6
2009 Female, age 91, both hemispheres 57.7
1960 Male, age 74, unknown 56.6
2629 Female, age 94, right hemisphere 53.5
2199 Male, age 80, right hemisphere 44.7
2394 Male, age 61, left hemisphere 39.2
2059 Female, age 85, both hemispheres 39.0
Stria terminalis, bed nucleus
nTPM: 52.3
1974 Female, age 91, both hemispheres 59.5
2201 Male, age 74, unknown 51.1
2486 Female, age 94, both hemispheres 46.2

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 20.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.7
Samples: 246

Max nTPM: 38.0
Min nTPM: 11.0
Std nTPM: 4.1
Median nTPM: 18.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 38.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 31.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 30.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 29.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 29.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 28.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 28.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 27.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 27.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 27.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 27.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.9
Samples: 246

Max nTPM: 36.7
Min nTPM: 10.6
Std nTPM: 5.5
Median nTPM: 19.8
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 36.7
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 35.6
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 35.3
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 35.3
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 35.0
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 34.9
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 34.2
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 33.7
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 33.6
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 33.3
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 32.2
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Brain - Putamen (basal ganglia)
Average nTPM: 17.8
Samples: 205

Max nTPM: 32.3
Min nTPM: 11.6
Std nTPM: 3.6
Median nTPM: 17.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 32.3
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 30.5
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 28.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 27.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 26.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 26.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 25.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 24.9
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 24.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 24.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 24.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 52.5
FF:10164-103B2 76 years, female 52.5
Nucleus accumbens
Scaled Tags Per Million: 45.4
FF:10037-101F1 23-56 years, mixed 45.4
Putamen
Scaled Tags Per Million: 66.2
FF:10176-103C5 60 years, female 66.2
Globus pallidus
Scaled Tags Per Million: 38.6
FF:10175-103C4 60 years, female 40.0
FF:10161-103A8 76 years, female 37.3

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 66.5
Pig sample Sample description nTPM
Caudate
nTPM: 59.2
Samples: 4

Max nTPM: 61.0
Min nTPM: 55.8
Sample A Female 61.0
Sample B Female 55.8
Sample C Male 60.9
Sample D Male 59.1
Putamen
nTPM: 66.5
Samples: 4

Max nTPM: 93.8
Min nTPM: 55.8
Sample A Female 57.9
Sample B Female 55.8
Sample C Male 93.8
Sample D Male 58.6
Septum
nTPM: 61.5
Samples: 4

Max nTPM: 69.0
Min nTPM: 51.8
Sample A Female 69.0
Sample B Female 61.0
Sample C Male 64.2
Sample D Male 51.8
Ventral pallidum
nTPM: 57.7
Samples: 4

Max nTPM: 68.8
Min nTPM: 50.5
Sample A Female 68.8
Sample B Female 58.6
Sample C Male 50.5
Sample D Male 52.9

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 89.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 89.2
Samples: 4

Max nTPM: 93.7
Min nTPM: 86.7
Sample A Male 93.7
Sample B Male 89.5
Sample C Female 86.7
Sample D Female 86.7
Septum
nTPM: 64.7
Samples: 4

Max nTPM: 72.7
Min nTPM: 57.5
Sample A Male 57.5
Sample B Male 72.7
Sample C Female 63.6
Sample D Female 64.9
Ventral forebrain
nTPM: 72.6
Samples: 4

Max nTPM: 75.7
Min nTPM: 67.5
Sample A Male 75.7
Sample B Male 67.5
Sample C Female 75.1
Sample D Female 72.2

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 5.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.3
76081923 Antisense, RP_060626_01_A03, Mouse strain C57BL/6J (56 days, male) 5.8
321203 Antisense, RP_040617_01_C05, Mouse strain C57BL/6J (56 days, male) 4.8
Pallidum
Expression energy: 3.1
76081923 Antisense, RP_060626_01_A03, Mouse strain C57BL/6J (56 days, male) 3.4
321203 Antisense, RP_040617_01_C05, Mouse strain C57BL/6J (56 days, male) 2.8

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