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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MT-CO2 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15682.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
60243.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
53229.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
46473.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
41055.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
40764.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
39998.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37953.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
36948.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
36369.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
35895.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
35253.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
34641.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
33885.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31907.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31720.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30057.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29988.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
29623.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29240.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
29141.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29003.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
28988.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28851.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28499.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
28321.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
28042.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
27988.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27858.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27805.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
27655.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27482.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27313.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27294.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27201.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27054.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26855.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
26340.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26311.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25936.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25889.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25613.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25464.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25246.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24945.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24375.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24349.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24112.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23937.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23913.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23885.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23858.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23801.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
23723.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23636.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23596.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23534.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
23521.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23513.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23404.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23399.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23086.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22964.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22832.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22730.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22593.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22261.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22128.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22053.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21918.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21915.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21913.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21847.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21708.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21516.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21364.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21321.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21141.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21040.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21021.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20978.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20919.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20828.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20793.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20756.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20739.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20675.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20605.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20564.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20211.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20096.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19797.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19678.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19366.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19358.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19259.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19200.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19133.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18999.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18912.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18610.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
18493.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18414.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18403.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18234.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18211.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18209.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18198.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18165.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17931.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17889.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17790.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17682.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17596.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17533.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17460.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17404.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17392.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17374.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17362.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17266.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17253.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17251.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17235.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17167.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17113.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17100.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16998.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16883.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16838.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16816.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16723.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16624.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16596.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16475.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16449.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16446.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16266.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16219.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16163.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16149.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16070.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16039.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15901.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15855.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15692.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15691.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15667.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15659.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15651.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15641.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15539.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15495.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15400.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15329.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15193.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15100.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15086.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15048.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14988.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14977.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14880.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14846.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14746.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14663.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14527.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14520.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14484.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14448.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14365.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14357.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14286.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14220.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14183.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13991.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13894.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13885.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13827.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13778.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13774.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13666.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13647.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13562.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13453.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13404.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13389.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13377.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13328.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13311.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13185.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13145.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13029.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12987.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12977.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12876.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12841.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12798.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12779.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12731.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12683.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12655.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12601.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12601.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12531.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12474.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12400.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12395.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12391.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12384.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12378.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12376.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12347.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12342.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12317.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12313.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12265.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12263.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12250.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12236.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12110.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12098.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12034.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11974.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11931.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11897.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11876.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11849.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11843.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11799.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11779.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11774.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11718.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11715.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11683.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11658.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11620.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11618.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11609.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11578.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11555.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11519.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11490.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11461.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11393.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11294.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11168.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11106.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11076.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11060.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11017.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10976.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10961.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10932.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10880.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10854.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10775.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10710.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10679.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10672.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10644.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10641.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10600.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10591.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10583.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10462.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10380.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10312.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10287.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10283.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10050.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10009.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9856.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9847.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9828.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9819.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9796.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9784.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9777.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9715.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9713.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9691.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9635.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9607.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9562.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9523.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9513.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9510.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9451.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9420.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9341.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9289.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9254.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9187.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8947.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8945.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8945.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8928.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8909.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8904.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8680.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8673.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8591.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8524.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8501.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8479.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8467.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8343.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8333.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8327.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8312.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8251.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8216.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8201.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8169.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8158.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8121.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8066.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8006.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7890.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7857.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7846.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7811.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7643.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7629.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7588.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7572.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7516.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7487.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7460.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7454.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7302.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7199.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7158.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7126.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7004.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7002.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6986.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6986.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6866.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6792.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6493.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6461.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6376.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6326.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6321.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6307.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5921.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5850.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5771.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5747.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5747.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5731.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5552.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5490.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5410.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5028.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4927.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4836.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4779.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4212.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3659.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3518.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.