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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MT-CO2 is not prognostic in Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8719.2
Number of samples
283
Samples
Sample
Description
TPM
TCGA-IR-A3LA-01A
0 years, female, white, stage:Stage IB, alive, 4172 days
38532.0
TCGA-EK-A2RN-01A
0 years, female, white, stage:Stage IB, alive, 71 days
37652.6
TCGA-VS-A8QH-01A
0 years, female, white, stage:Stage IB, dead, 1210 days
32223.9
TCGA-EK-A3GN-01A
0 years, female, white, stage:Stage IIIB, alive, 27 days
30387.8
TCGA-FU-A40J-01A
0 years, female, white, stage:Stage IIIB, alive, 426 days
27074.7
TCGA-DR-A0ZL-01A
0 years, female, asian, stage:Stage IB, alive, 2669 days
26863.4
TCGA-C5-A7CO-01A
0 years, female, white, stage:Stage IB, alive, 4482 days
24625.0
TCGA-VS-A8Q9-01A
0 years, female, white, stage:Stage IB, alive, 1630 days
24521.9
TCGA-ZX-AA5X-01A
0 years, female, white, stage:Stage IIIB, alive, 119 days
24411.7
TCGA-VS-A8EK-01A
0 years, female, white, stage:Stage IVA, dead, 829 days
23221.8
TCGA-EK-A2IR-01A
0 years, female, white, stage:Stage IB, alive, 3442 days
23069.0
TCGA-EA-A50E-01A
0 years, female, asian, stage:Stage IVA, dead, 227 days
22958.3
TCGA-FU-A770-01A
0 years, female, white, stage:Stage IIIB, alive, 34 days
22187.4
TCGA-IR-A3LI-01A
0 years, female, white, stage:Stage IVB, alive, 2493 days
21726.4
TCGA-C5-A2LS-01A
0 years, female, white, stage:Stage IB, alive, 1345 days
21718.5
TCGA-JW-A69B-01A
0 years, female, white, stage:Stage IB, alive, 863 days
20610.0
TCGA-MA-AA3X-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 617 days
19200.8
TCGA-EA-A411-01A
0 years, female, white, stage:Stage IB, alive, 747 days
19176.8
TCGA-VS-A9V2-01A
0 years, female, white, stage:Stage IB, alive, 555 days
19074.8
TCGA-EK-A2PG-01A
0 years, female, black or african american, stage:'--, alive, 46 days
18581.7
TCGA-C5-A7UH-01A
0 years, female, white, stage:Stage IIIB, alive, 3988 days
17940.3
TCGA-IR-A3LF-01A
0 years, female, white, stage:Stage IB, alive, 2949 days
17805.4
TCGA-EK-A2RB-01A
0 years, female, white, stage:Stage IVB, alive, 9 days
17719.4
TCGA-EA-A3QD-01A
0 years, female, white, stage:Stage IIIB, alive, 397 days
17195.0
TCGA-EK-A2IP-01A
0 years, female, white, stage:Stage IB, alive, 202 days
17068.6
TCGA-BI-A20A-01A
0 years, female, white, stage:Stage IB, alive, 720 days
16965.0
TCGA-DR-A0ZM-01A
0 years, female, white, stage:Stage IIIB, alive, 1791 days
16555.9
TCGA-EK-A2PI-01A
0 years, female, white, stage:Stage IIIB, alive, 586 days
16456.9
TCGA-FU-A23L-01A
0 years, female, white, stage:Stage IIA, alive, 725 days
16403.9
TCGA-EA-A4BA-01A
0 years, female, white, stage:Stage IB, alive, 755 days
16281.8
TCGA-C5-A1BL-01A
0 years, female, white, stage:Stage IB, alive, 5271 days
15544.9
TCGA-IR-A3LL-01A
0 years, female, white, stage:Stage IB, alive, 1106 days
15416.4
TCGA-EK-A2GZ-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 383 days
15126.3
TCGA-XS-A8TJ-01A
0 years, female, black or african american, stage:Stage IB, alive, 890 days
15047.1
TCGA-C5-A8XH-01A
0 years, female, white, stage:Stage IB, dead, 1394 days
14598.6
TCGA-C5-A7X8-01A
0 years, female, white, stage:Stage IB, alive, 83 days
14282.0
TCGA-ZJ-A8QR-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage I, dead, 582 days
14240.3
TCGA-DS-A1OB-01A
0 years, female, white, stage:Stage IB, dead, 861 days
13967.1
TCGA-IR-A3LB-01A
0 years, female, white, stage:Stage IB, dead, 2032 days
13852.3
TCGA-C5-A2M1-01A
0 years, female, white, stage:Stage IB, alive, 1169 days
13338.5
TCGA-VS-A9UO-01A
0 years, female, white, stage:Stage IIB, alive, 1456 days
12867.2
TCGA-C5-A3HE-01A
0 years, female, white, stage:Stage IB, alive, 548 days
12812.3
TCGA-2W-A8YY-01A
0 years, female, white, stage:Stage IB, alive, 533 days
12783.4
TCGA-VS-A8QF-01A
0 years, female, white, stage:Stage IIB, alive, 1800 days
12692.5
TCGA-VS-A9U6-01A
0 years, female, white, stage:Stage IVB, alive, 1320 days
12644.8
TCGA-Q1-A73Q-01A
0 years, female, white, stage:Stage I, alive, 284 days
12625.3
TCGA-EK-A2H0-01A
0 years, female, white, stage:Stage IIB, alive, 1847 days
12497.8
TCGA-Q1-A73P-01A
0 years, female, white, stage:Stage IB, alive, 483 days
12460.3
TCGA-EK-A2RJ-01A
0 years, female, white, stage:Stage IB, alive, 53 days
12379.6
TCGA-EK-A2PM-01A
0 years, female, white, stage:Stage IIB, alive, 18 days
12303.5
TCGA-MU-A5YI-01A
0 years, female, black or african american, stage:Stage IA, alive, 1053 days
12219.5
TCGA-C5-A1MH-01A
0 years, female, white, stage:Stage IIIB, dead, 1186 days
12178.6
TCGA-C5-A8YQ-01A
0 years, female, white, stage:Stage IB, dead, 715 days
12080.9
TCGA-VS-A8QM-01A
0 years, female, stage:Stage IVB, dead, 951 days
11893.5
TCGA-VS-A8EI-01A
0 years, female, white, stage:Stage IIB, alive, 729 days
11860.5
TCGA-DS-A0VM-01A
0 years, female, white, stage:Stage IB, alive, 3589 days
11786.1
TCGA-VS-A9UB-01A
0 years, female, stage:Stage IIB, alive, 911 days
11745.8
TCGA-DS-A0VN-01A
0 years, female, white, stage:Stage IB, alive, 3609 days
11387.3
TCGA-VS-A9UQ-01A
0 years, female, stage:Stage IB, alive, 1263 days
11329.5
TCGA-EK-A2R9-01A
0 years, female, white, stage:Stage IB, alive, 4 days
11299.5
TCGA-C5-A7UE-01A
0 years, female, white, stage:Stage IB, alive, 4738 days
11210.8
TCGA-VS-A9U5-01A
0 years, female, white, stage:Stage IIB, alive, 1535 days
11205.7
TCGA-VS-A9UM-01A
0 years, female, black or african american, stage:Stage IVB, dead, 829 days
11119.0
TCGA-C5-A8XJ-01A
0 years, female, white, stage:Stage IB, alive, 4467 days
11079.8
TCGA-C5-A7CK-01A
0 years, female, white, stage:Stage IVA, dead, 4086 days
11072.2
TCGA-EK-A2RM-01A
0 years, female, white, stage:Stage IB, alive, 50 days
10926.3
TCGA-C5-A1M6-01A
0 years, female, white, stage:Stage IIB, dead, 955 days
10783.0
TCGA-LP-A4AU-01A
0 years, female, asian, stage:Stage IIIB, alive, 343 days
10775.6
TCGA-C5-A7UC-01A
0 years, female, white, stage:Stage IB, dead, 523 days
10772.0
TCGA-RA-A741-01A
0 years, female, white, stage:Stage IIB, alive, 444 days
10758.5
TCGA-VS-A9V5-01A
0 years, female, white, stage:Stage IIB, dead, 494 days
10756.0
TCGA-EK-A3GK-01A
0 years, female, white, stage:Stage IB, alive, 15 days
10715.8
TCGA-VS-A9V4-01A
0 years, female, white, stage:Stage IVA, dead, 132 days
10617.7
TCGA-EK-A2PK-01A
0 years, female, white, stage:Stage IB, alive, 12 days
10577.9
TCGA-Q1-A6DV-01A
0 years, female, asian, stage:Stage IB, alive, 491 days
10571.0
TCGA-VS-A950-01A
0 years, female, stage:Stage IIIA, alive, 1221 days
10563.3
TCGA-C5-A905-01A
0 years, female, black or african american, stage:Stage IB, alive, 4879 days
10512.1
TCGA-C5-A1M7-01A
0 years, female, white, stage:Stage IB, alive, 1409 days
10256.4
TCGA-C5-A1MJ-01A
0 years, female, white, stage:Stage IB, dead, 14 days
10235.0
TCGA-EX-A8YF-01A
0 years, female, white, stage:Stage IB, alive, 473 days
10178.1
TCGA-VS-A952-01A
0 years, female, white, stage:Stage IB, alive, 1778 days
9968.8
TCGA-DS-A0VL-01A
0 years, female, white, stage:Stage IB, dead, 1692 days
9966.4
TCGA-WL-A834-01A
0 years, female, white, stage:'--, alive, 791 days
9953.0
TCGA-C5-A7CM-01A
0 years, female, white, stage:Stage IB, alive, 619 days
9945.7
TCGA-FU-A3HZ-01A
0 years, female, white, stage:Stage IIA, alive, 1103 days
9904.8
TCGA-EA-A3HR-01A
0 years, female, white, stage:Stage II, alive, 940 days
9823.3
TCGA-HM-A6W2-01A
0 years, female, black or african american, stage:Stage IVB, alive, 287 days
9787.9
TCGA-C5-A7CH-01A
0 years, female, white, stage:Stage IIB, alive, 4694 days
9765.0
TCGA-EA-A44S-01A
0 years, female, white, stage:Stage IIIB, alive, 369 days
9759.7
TCGA-C5-A907-01A
0 years, female, white, stage:Stage IB, alive, 448 days
9582.2
TCGA-DG-A2KH-01A
0 years, female, stage:Stage IB, alive, 34 days
9526.6
TCGA-VS-A94Z-01A
0 years, female, white, stage:Stage IIB, alive, 1015 days
9486.1
TCGA-HG-A2PA-01A
0 years, female, white, stage:Stage IB, dead, 773 days
9429.3
TCGA-FU-A3YQ-01A
0 years, female, white, stage:Stage IB, alive, 861 days
9378.8
TCGA-EA-A3QE-01A
0 years, female, white, stage:Stage IB, alive, 761 days
9325.8
TCGA-EK-A2RK-01A
0 years, female, white, stage:Stage IA, alive, 13 days
9295.0
TCGA-C5-A2LZ-01A
0 years, female, white, stage:Stage IIIB, dead, 3046 days
9260.1
TCGA-FU-A3TQ-01A
0 years, female, white, stage:Stage IIIB, alive, 795 days
9252.7
TCGA-FU-A5XV-01A
0 years, female, white, stage:Stage IIIB, alive, 321 days
9221.8
TCGA-VS-A8EL-01A
0 years, female, black or african american, stage:Stage IIB, alive, 1992 days
9207.1
TCGA-ZJ-AAX4-01A
0 years, female, white, stage:Stage II, alive, 21 days
9188.1
TCGA-EK-A2R8-01A
0 years, female, white, stage:Stage IB, alive, 44 days
9182.9
TCGA-LP-A4AX-01A
0 years, female, asian, stage:Stage IB, alive, 380 days
9051.5
TCGA-DG-A2KK-01A
0 years, female, stage:Stage IIIB, alive, 2496 days
8984.6
TCGA-DS-A3LQ-01A
0 years, female, stage:Stage IIIB, alive, 699 days
8925.7
TCGA-Q1-A6DT-01A
0 years, female, white, stage:Stage I, dead, 275 days
8894.2
TCGA-EK-A2RO-01A
0 years, female, american indian or alaska native, stage:Stage IIB, alive, 2 days
8751.9
TCGA-C5-A8YT-01A
0 years, female, white, stage:Stage IB, dead, 633 days
8750.4
TCGA-Q1-A5R2-01A
0 years, female, white, stage:'--, alive, 499 days
8668.5
TCGA-VS-A9UC-01A
0 years, female, stage:Stage IIB, alive, 825 days
8643.2
TCGA-EA-A1QT-01A
0 years, female, white, stage:Stage IB, alive, 1243 days
8610.3
TCGA-BI-A0VS-01A
0 years, female, white, stage:Stage IB, alive, 1735 days
8538.7
TCGA-EK-A2PL-01A
0 years, female, white, stage:Stage IIIB, alive, 13 days
8508.1
TCGA-VS-A9UD-01A
0 years, female, white, stage:Stage IIIA, alive, 739 days
8432.1
TCGA-VS-A8EH-01A
0 years, female, stage:Stage IIIB, alive, 986 days
8415.7
TCGA-C5-A1M8-01A
0 years, female, white, stage:Stage IB, alive, 919 days
8378.9
TCGA-MY-A913-01A
0 years, female, black or african american, stage:Stage IIA, alive, 524 days
8371.5
TCGA-UC-A7PG-01A
0 years, female, white, stage:Stage IIIB, dead, 370 days
8347.3
TCGA-EA-A97N-01A
0 years, female, white, stage:Stage IB, alive, 11 days
8332.5
TCGA-VS-A8EC-01A
0 years, female, white, stage:Stage IIIB, alive, 1415 days
8305.8
TCGA-MA-AA43-01A
0 years, female, white, stage:Stage IIIB, alive, 346 days
8279.5
TCGA-EA-A410-01A
0 years, female, white, stage:Stage IIA, alive, 803 days
8228.2
TCGA-FU-A2QG-01A
0 years, female, white, stage:Stage IB, alive, 579 days
8180.2
TCGA-C5-A1BM-01A
0 years, female, black or african american, stage:Stage IB, dead, 2520 days
8041.6
TCGA-EA-A556-01A
0 years, female, white, stage:Stage IB, alive, 453 days
7995.2
TCGA-IR-A3L7-01A
0 years, female, white, stage:Stage IB, alive, 4483 days
7991.4
TCGA-EA-A78R-01A
0 years, female, asian, stage:Stage IB, alive, 410 days
7983.2
TCGA-HM-A3JJ-01A
0 years, female, black or african american, stage:Stage IB, dead, 659 days
7965.0
TCGA-VS-A9UZ-01A
0 years, female, white, stage:Stage IB, alive, 2044 days
7951.0
TCGA-VS-A9UR-01A
0 years, female, white, stage:Stage IIA, alive, 793 days
7929.5
TCGA-C5-A8XK-01A
0 years, female, black or african american, stage:'--, alive, 3039 days
7906.8
TCGA-C5-A1M9-01A
0 years, female, white, stage:Stage IB, dead, 1065 days
7892.0
TCGA-C5-A2LT-01A
0 years, female, white, stage:Stage IB, alive, 2226 days
7873.9
TCGA-C5-A7XC-01A
0 years, female, white, stage:Stage IB, alive, 1551 days
7757.4
TCGA-C5-A1MK-01A
0 years, female, white, stage:Stage IIIB, dead, 74 days
7743.7
TCGA-DG-A2KM-01A
0 years, female, stage:Stage IB, alive, 1946 days
7672.0
TCGA-EA-A439-01A
0 years, female, asian, stage:Stage IIA, alive, 965 days
7595.1
TCGA-DS-A1O9-01A
0 years, female, white, stage:Stage IVA, dead, 266 days
7573.1
TCGA-FU-A3HY-01A
0 years, female, white, stage:Stage IB, alive, 954 days
7466.0
TCGA-C5-A1MN-01A
0 years, female, white, stage:Stage IIIB, dead, 1245 days
7430.3
TCGA-JX-A5QV-01A
0 years, female, white, stage:Stage IB, alive, 636 days
7422.8
TCGA-EX-A449-01A
0 years, female, white, stage:Stage IVB, alive, 447 days
7407.9
TCGA-EX-A3L1-01A
0 years, female, white, stage:Stage IIA, alive, 463 days
7403.8
TCGA-Q1-A5R1-01A
0 years, female, white, stage:Stage IB, alive, 474 days
7385.8
TCGA-VS-A8EG-01A
0 years, female, stage:Stage IB, alive, 1386 days
7328.8
TCGA-VS-A94Y-01A
0 years, female, white, stage:Stage IIB, dead, 144 days
7237.5
TCGA-JW-AAVH-01A
0 years, female, white, stage:Stage IB, alive, 552 days
7192.9
TCGA-BI-A0VR-01A
0 years, female, white, stage:Stage IIIB, alive, 1505 days
7132.3
TCGA-VS-A958-01A
0 years, female, white, stage:Stage IIB, alive, 1525 days
7121.3
TCGA-C5-A902-01A
0 years, female, black or african american, stage:Stage IB, alive, 149 days
7088.1
TCGA-C5-A7CG-01A
0 years, female, white, stage:Stage IB, alive, 6408 days
7004.0
TCGA-EA-A3Y4-01A
0 years, female, white, stage:Stage IB, alive, 1122 days
6989.4
TCGA-JX-A3Q0-01A
0 years, female, black or african american, stage:Stage III, alive, 6375 days
6970.9
TCGA-VS-A9V1-01A
0 years, female, white, stage:Stage IVB, dead, 157 days
6969.9
TCGA-VS-A8EJ-01A
0 years, female, white, stage:Stage IIB, dead, 607 days
6884.8
TCGA-EK-A2H1-01A
0 years, female, white, stage:Stage IB, alive, 799 days
6880.6
TCGA-EA-A5ZD-01A
0 years, female, asian, stage:Stage IB, alive, 830 days
6834.0
TCGA-MA-AA3Z-01A
0 years, female, white, stage:Stage IB, alive, 595 days
6781.8
TCGA-VS-A9UJ-01A
0 years, female, stage:Stage IIB, dead, 52 days
6776.9
TCGA-EX-A69M-01A
0 years, female, white, stage:Stage IB, dead, 253 days
6764.4
TCGA-EX-A69L-01A
0 years, female, asian, stage:Stage IB, alive, 602 days
6687.0
TCGA-VS-A9U7-01A
0 years, female, white, stage:Stage IB, alive, 1472 days
6551.9
TCGA-EK-A2R7-01A
0 years, female, white, stage:Stage IB, alive, 27 days
6511.4
TCGA-C5-A7UI-01A
0 years, female, black or african american, stage:Stage IB, dead, 2888 days
6509.2
TCGA-DS-A5RQ-01A
0 years, female, white, stage:Stage IB, alive, 512 days
6440.5
TCGA-R2-A69V-01A
0 years, female, white, stage:Stage IB, alive, 596 days
6440.4
TCGA-HM-A4S6-01A
0 years, female, white, stage:Stage IIIB, alive, 454 days
6437.9
TCGA-PN-A8MA-01A
0 years, female, black or african american, stage:Stage IIB, alive, 90 days
6427.4
TCGA-4J-AA1J-01A
0 years, female, white, stage:Stage IB, alive, 542 days
6425.1
TCGA-VS-AA62-01A
0 years, female, white, stage:Stage IIB, dead, 469 days
6396.6
TCGA-FU-A3NI-01A
0 years, female, white, stage:Stage IB, dead, 638 days
6354.4
TCGA-VS-A8QC-01A
0 years, female, white, stage:Stage IVA, dead, 350 days
6347.0
TCGA-Q1-A6DW-01A
0 years, female, white, stage:Stage I, alive, 534 days
6249.9
TCGA-FU-A57G-01A
0 years, female, white, stage:Stage IB, alive, 1078 days
6217.5
TCGA-C5-A1BJ-01A
0 years, female, white, stage:Stage IIB, alive, 4385 days
6206.4
TCGA-MU-A51Y-01A
0 years, female, white, stage:Stage IIA, alive, 854 days
6147.9
TCGA-EK-A2RC-01A
0 years, female, stage:Stage IB, alive, 129 days
6129.0
TCGA-C5-A3HF-01A
0 years, female, white, stage:Stage IB, dead, 543 days
6023.9
TCGA-C5-A2M2-01A
0 years, female, white, stage:Stage IB, dead, 1011 days
6007.1
TCGA-EK-A2RL-01A
0 years, female, black or african american, stage:Stage IB, dead, 1453 days
5980.8
TCGA-IR-A3LK-01A
0 years, female, white, stage:Stage IB, dead, 908 days
5928.5
TCGA-VS-A954-01A
0 years, female, stage:Stage IIIB, alive, 1714 days
5927.9
TCGA-JW-A5VJ-01A
0 years, female, american indian or alaska native, stage:Stage IIB, alive, 652 days
5924.2
TCGA-C5-A8XI-01A
0 years, female, black or african american, stage:Stage IB, alive, 254 days
5872.4
TCGA-C5-A2LY-01A
0 years, female, white, stage:Stage IB, alive, 2383 days
5847.5
TCGA-DG-A2KL-01A
0 years, female, stage:Stage IIA, alive, 1367 days
5839.7
TCGA-VS-A9V0-01A
0 years, female, stage:Stage IB, alive, 573 days
5634.4
TCGA-EK-A2RA-01A
0 years, female, stage:Stage IIA, alive, 1246 days
5585.9
TCGA-Q1-A73O-01A
0 years, female, stage:Stage IB, alive, 428 days
5525.5
TCGA-C5-A7CJ-01A
0 years, female, white, stage:Stage IIA, dead, 3097 days
5524.2
TCGA-C5-A8YR-01A
0 years, female, white, stage:Stage IB, dead, 837 days
5497.7
TCGA-JW-A5VH-01A
0 years, female, american indian or alaska native, stage:Stage IVB, dead, 100 days
5471.3
TCGA-JW-A5VI-01A
0 years, female, american indian or alaska native, stage:Stage IIB, alive, 747 days
5397.4
TCGA-C5-A1ML-01A
0 years, female, white, stage:Stage IB, dead, 636 days
5347.7
TCGA-C5-A8ZZ-01A
0 years, female, white, stage:Stage IIB, alive, 636 days
5285.5
TCGA-ZJ-AAXA-01A
0 years, female, white, stage:Stage IB, alive, 43 days
5282.0
TCGA-VS-A957-01A
0 years, female, white, stage:Stage IB, alive, 1688 days
5236.9
TCGA-C5-A1MI-01A
0 years, female, white, stage:Stage IB, dead, 1083 days
5224.1
TCGA-C5-A1MQ-01A
0 years, female, white, stage:Stage IIA, alive, 1031 days
5211.8
TCGA-VS-A9UI-01A
0 years, female, white, stage:Stage IIB, dead, 1372 days
5208.5
TCGA-EA-A3HQ-01A
0 years, female, white, stage:Stage II, alive, 1136 days
5153.6
TCGA-DS-A1OA-01A
0 years, female, asian, stage:Stage IB, dead, 879 days
5140.3
TCGA-MA-AA41-01A
0 years, female, white, stage:Stage IIB, alive, 279 days
5083.3
TCGA-VS-A9UY-01A
0 years, female, stage:Stage IVB, dead, 555 days
5055.8
TCGA-VS-A8Q8-01A
0 years, female, white, stage:Stage IB, dead, 978 days
4993.0
TCGA-VS-A959-01A
0 years, female, stage:Stage IIB, alive, 1561 days
4963.0
TCGA-FU-A3WB-01A
0 years, female, white, stage:Stage IIA, alive, 491 days
4955.3
TCGA-VS-A9UU-01A
0 years, female, stage:Stage IIB, alive, 442 days
4933.9
TCGA-JW-A5VL-01A
0 years, female, american indian or alaska native, stage:Stage IB, alive, 474 days
4895.8
TCGA-VS-A9UH-01A
0 years, female, black or african american, stage:Stage IVA, alive, 1427 days
4890.9
TCGA-C5-A0TN-01A
0 years, female, black or african american, stage:Stage IB, dead, 348 days
4724.3
TCGA-EA-A43B-01A
0 years, female, white, stage:Stage IB, alive, 791 days
4695.3
TCGA-VS-A9UV-01A
0 years, female, stage:Stage IVA, dead, 104 days
4663.7
TCGA-VS-A953-01A
0 years, female, stage:Stage IVA, dead, 477 days
4624.9
TCGA-MY-A5BE-01A
0 years, female, black or african american, stage:Stage IB, alive, 1066 days
4592.6
TCGA-DS-A7WF-01A
0 years, female, stage:Stage IB, dead, 492 days
4556.7
TCGA-LP-A7HU-01A
0 years, female, asian, stage:Stage II, alive, 406 days
4538.6
TCGA-LP-A5U3-01A
0 years, female, asian, stage:Stage IB, alive, 25 days
4519.0
TCGA-Q1-A73R-01A
0 years, female, white, stage:Stage I, alive, 567 days
4503.8
TCGA-EA-A1QS-01A
0 years, female, white, stage:Stage IB, alive, 1203 days
4487.0
TCGA-EA-A3HS-01A
0 years, female, white, stage:Stage IB, alive, 959 days
4453.2
TCGA-MA-AA3W-01A
0 years, female, white, stage:Stage IB, alive, 685 days
4429.4
TCGA-MA-AA42-01A
0 years, female, white, stage:Stage IIB, alive, 259 days
4379.1
TCGA-UC-A7PF-01A
0 years, female, stage:Stage IB, dead, 2859 days
4317.2
TCGA-EA-A5FO-01A
0 years, female, white, stage:Stage IB, alive, 815 days
4184.3
TCGA-LP-A4AW-01A
0 years, female, asian, stage:Stage IA, alive, 27 days
4152.9
TCGA-EA-A3HT-01A
0 years, female, white, stage:Stage IB, alive, 954 days
4134.2
TCGA-DS-A7WI-01A
0 years, female, white, stage:Stage IIA, dead, 252 days
4130.0
TCGA-DS-A1OD-01A
0 years, female, white, stage:Stage IB, alive, 3874 days
4098.4
TCGA-EA-A6QX-01A
0 years, female, asian, stage:Stage IIIB, alive, 730 days
4082.0
TCGA-MY-A5BD-01A
0 years, female, white, stage:Stage IIB, alive, 1667 days
4023.4
TCGA-ZJ-A8QQ-01A
0 years, female, white, stage:Stage IIB, alive, 2056 days
4007.1
TCGA-EA-A3HU-01A
0 years, female, white, stage:Stage II, alive, 1013 days
4003.3
TCGA-C5-A7CL-01A
0 years, female, white, stage:Stage IIIB, dead, 471 days
3975.8
TCGA-VS-A9UP-01A
0 years, female, stage:Stage IIA, alive, 1444 days
3952.9
TCGA-VS-A9UL-01A
0 years, female, white, stage:Stage IIIB, dead, 442 days
3943.5
TCGA-VS-A8EB-01A
0 years, female, white, stage:Stage IIIB, dead, 305 days
3940.1
TCGA-Q1-A73S-01A
0 years, female, white, stage:Stage IB, alive, 688 days
3938.8
TCGA-VS-A94W-01A
0 years, female, white, stage:Stage IIB, alive, 1243 days
3901.5
TCGA-DS-A0VK-01A
0 years, female, white, stage:Stage IB, dead, 1118 days
3813.7
TCGA-MU-A8JM-01A
0 years, female, white, stage:Stage IB, alive, 607 days
3803.5
TCGA-EX-A1H5-01A
0 years, female, black or african american, stage:Stage IIB, alive, 619 days
3770.1
TCGA-LP-A5U2-01A
0 years, female, asian, stage:Stage IIIB, alive, 9 days
3690.5
TCGA-VS-A9V3-01A
0 years, female, white, stage:Stage IVB, alive, 540 days
3657.2
TCGA-JX-A3Q8-01A
0 years, female, asian, stage:Stage IB, alive, 1357 days
3646.0
TCGA-C5-A7X5-01A
0 years, female, black or african american, stage:Stage IVB, dead, 414 days
3492.3
TCGA-EK-A2RE-01A
0 years, female, white, stage:Stage IIA, alive, 57 days
3443.1
TCGA-FU-A3TX-01A
0 years, female, stage:Stage IB, alive, 45 days
3413.0
TCGA-IR-A3LH-01A
0 years, female, black or african american, stage:Stage IIA, alive, 2394 days
3405.1
TCGA-EA-A5ZF-01A
0 years, female, asian, stage:Stage IB, alive, 828 days
3332.4
TCGA-DS-A1OC-01A
0 years, female, white, stage:Stage IB, alive, 376 days
3274.9
TCGA-C5-A1M5-01A
0 years, female, white, stage:Stage IB, dead, 2052 days
3219.6
TCGA-EK-A3GJ-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IB, alive, 3 days
3140.8
TCGA-UC-A7PI-01A
0 years, female, white, stage:Stage IB, alive, 2114 days
3128.7
TCGA-EA-A5O9-01A
0 years, female, white, stage:Stage IB, alive, 788 days
3076.0
TCGA-JW-A5VK-01A
0 years, female, black or african american, stage:Stage IB, alive, 623 days
3040.0
TCGA-DS-A7WH-01A
0 years, female, white, stage:Stage IB, alive, 533 days
3037.1
TCGA-VS-A9UT-01A
0 years, female, asian, stage:Stage IB, alive, 482 days
3012.4
TCGA-UC-A7PD-01A
0 years, female, american indian or alaska native, stage:Stage IB, dead, 355 days
3008.7
TCGA-IR-A3LC-01A
0 years, female, white, stage:Stage IB, alive, 3935 days
2987.7
TCGA-MY-A5BF-01A
0 years, female, white, stage:Stage IIA, alive, 634 days
2959.0
TCGA-VS-A8QA-01A
0 years, female, stage:Stage IB, alive, 1099 days
2695.1
TCGA-C5-A1MP-01A
0 years, female, black or african american, stage:Stage IB, alive, 109 days
2686.9
TCGA-C5-A2LX-01A
0 years, female, white, stage:Stage IB, alive, 2526 days
2625.3
TCGA-JX-A3PZ-01A
0 years, female, white, stage:Stage IB, dead, 642 days
2584.2
TCGA-VS-A94X-01A
0 years, female, black or african american, stage:Stage IIB, dead, 506 days
2574.2
TCGA-EA-A5ZE-01A
0 years, female, asian, stage:Stage IB, alive, 829 days
2498.0
TCGA-C5-A7X3-01A
0 years, female, white, stage:Stage IIIB, dead, 284 days
2411.9
TCGA-C5-A3HL-01A
0 years, female, white, stage:Stage IB, alive, 621 days
2345.6
TCGA-JW-A5VG-01A
0 years, female, american indian or alaska native, stage:Stage IIA, alive, 834 days
2304.8
TCGA-HM-A3JK-01A
0 years, female, white, stage:Stage IIA, alive, 632 days
2278.1
TCGA-FU-A3EO-01A
0 years, female, white, stage:Stage IIB, alive, 490 days
2275.3
TCGA-JW-A852-01A
0 years, female, white, stage:Stage IIB, dead, 252 days
2254.9
TCGA-C5-A901-01A
0 years, female, white, stage:'--, alive, 518 days
2196.5
TCGA-ZJ-AAXU-01A
0 years, female, white, stage:Stage IIB, alive, 5 days
2195.9
TCGA-Q1-A5R3-01A
0 years, female, white, stage:'--, alive, 485 days
2193.4
TCGA-C5-A1ME-01A
0 years, female, white, stage:Stage IB, alive, 1756 days
2179.2
TCGA-MA-AA3Y-01A
0 years, female, white, stage:Stage IB, alive, 542 days
1905.5
TCGA-GH-A9DA-01A
0 years, female, white, stage:Stage IB, alive, 540 days
1714.2
TCGA-FU-A23K-01A
0 years, female, white, stage:Stage IIIB, alive, 372 days
1686.1
TCGA-C5-A2LV-01A
0 years, female, black or african american, stage:Stage IB, alive, 2234 days
1229.2
TCGA-C5-A1MF-01A
0 years, female, white, stage:Stage IB, alive, 1617 days
1200.4
TCGA-DG-A2KJ-01A
0 years, female, stage:Stage IIIB, alive, 2893 days
565.6
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CERVICAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.