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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
S100A6 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
336.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6539.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4790.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3940.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3760.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3449.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2852.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2666.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2631.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2504.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2499.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2446.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2210.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2202.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2023.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1954.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1689.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1598.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1502.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1436.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1296.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1288.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1246.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1213.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1182.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1170.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1165.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1065.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1043.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1014.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
987.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
960.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
923.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
914.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
897.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
866.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
774.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
770.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
761.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
743.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
709.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
669.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
660.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
659.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
657.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
643.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
609.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
588.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
573.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
558.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
548.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
489.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
476.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
471.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
460.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
457.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
447.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
427.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
419.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
417.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
415.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
406.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
402.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
390.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
384.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
376.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
375.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
374.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
374.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
365.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
353.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
352.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
350.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
346.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
337.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
334.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
327.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
326.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
319.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
314.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
313.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
310.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
308.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
306.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
302.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
295.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
291.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
286.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
286.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
282.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
281.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
278.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
277.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
271.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
270.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
269.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
265.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
257.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
256.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
255.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
252.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
252.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
251.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
245.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
245.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
242.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
241.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
227.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
224.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
220.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
216.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
215.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
212.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
209.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
208.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
208.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
207.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
207.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
206.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
205.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
204.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
203.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
199.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
199.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
197.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
195.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
194.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
190.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
189.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
187.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
185.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
183.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
182.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
180.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
180.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
177.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
176.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
176.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
175.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
173.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
171.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
171.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
170.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
169.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
169.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
168.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
167.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
166.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
162.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
160.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
160.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
157.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
154.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
152.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
152.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
152.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
147.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
145.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
144.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
143.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
142.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
142.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
141.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
140.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
134.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
133.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
132.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
132.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
132.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
131.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
130.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
127.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
126.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
126.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
124.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
124.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
123.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
122.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
120.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
120.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
119.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
119.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
117.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
116.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
115.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
114.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
113.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
111.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
110.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
109.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
109.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
109.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
109.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
108.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
108.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
107.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
106.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
106.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
102.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
102.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
102.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
100.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
100.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
100.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
100.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
98.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
98.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
98.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
96.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
96.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
96.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
94.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
93.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
93.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
91.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
91.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
90.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
90.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
89.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
89.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
88.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
88.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
87.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
87.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
85.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
85.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
84.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
84.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
83.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
83.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
83.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
82.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
81.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
81.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
81.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
80.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
80.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
78.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
77.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
76.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
75.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
75.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
75.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
75.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
74.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
74.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
72.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
72.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
71.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
71.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
69.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
68.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
68.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
68.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
66.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
66.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
65.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
65.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
64.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
64.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
64.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
63.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
63.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
61.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
58.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
58.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
56.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
56.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
56.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
56.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
55.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
54.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
54.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
54.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
53.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
53.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
53.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
51.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
51.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
51.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
51.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
50.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
50.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
48.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
48.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
48.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
47.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
47.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
46.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
45.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
45.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
44.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
44.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
44.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
44.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
43.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
43.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
43.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
43.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
43.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
42.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
40.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
40.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
39.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
39.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
39.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
38.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
37.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
36.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
35.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
34.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
34.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
34.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
33.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
33.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
33.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
33.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
33.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
32.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
31.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
30.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
28.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
28.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
26.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
23.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
S100A6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
333.7
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9755.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
6033.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
5846.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5720.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
3587.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3302.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
2836.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
2468.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2379.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
2268.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
2157.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
2069.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
2039.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
1464.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
1431.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1370.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1031.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
894.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
690.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
652.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
642.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
605.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
604.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
571.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
562.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
546.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
491.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
427.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
414.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
393.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
372.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
369.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
363.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
330.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
327.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
292.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
266.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
259.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
257.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
247.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
234.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
234.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
227.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
224.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
215.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
213.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
200.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
189.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
183.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
183.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
179.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
178.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
164.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
161.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
160.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
158.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
155.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
153.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
150.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
149.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
140.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
131.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
129.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
129.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
126.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
125.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
119.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
118.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
116.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
116.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
108.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
105.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
103.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
100.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
99.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
99.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
97.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
97.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
94.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
92.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
91.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
90.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
83.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
82.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
79.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
77.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
75.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
73.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
72.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
70.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
70.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
69.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
69.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
68.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
68.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
67.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
65.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
64.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
64.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
63.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
63.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
63.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
62.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
61.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
59.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
59.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
56.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
56.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
54.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
54.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
51.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
51.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
50.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
49.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
49.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
49.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
48.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
48.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
47.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
47.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
47.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
44.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
43.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
41.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
41.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
40.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
40.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
40.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
38.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
38.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
38.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
37.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
37.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
36.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
32.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
31.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
31.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
31.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
30.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
30.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
30.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
28.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
27.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
27.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
27.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
135
Tumor
3.0
311
Tumor
2.9
917
Tumor
2.4
851
Tumor
2.4
192
Normal
1.6
444
Normal
1.6
535
Tumor
1.6
283
Tumor
1.6
268
Normal
1.3
478
Normal
1.2
357
Tumor
1.2
191
Tumor
1.2
384
Normal
1.1
524
Normal
1.0
492
Normal
1.0
538
Normal
1.0
125
Tumor
1.0
427
Tumor
1.0
126
Normal
0.9
211
Tumor
0.9
545
Tumor
0.9
814
Normal
0.9
447
Tumor
0.8
383
Tumor
0.8
983
Tumor
0.8
982
Normal
0.8
146
Normal
0.8
491
Tumor
0.7
455
Tumor
0.7
963
Tumor
0.7
536
Normal
0.7
516
Normal
0.7
224
Normal
0.7
185
Tumor
0.7
141
Tumor
0.6
563
Tumor
0.6
386
Normal
0.6
188
Normal
0.6
354
Normal
0.6
421
Tumor
0.6
187
Tumor
0.5
884
Normal
0.5
863
Tumor
0.5
958
Normal
0.5
262
Normal
0.5
375
Tumor
0.5
672
Normal
0.5
498
Normal
0.5
877
Tumor
0.5
514
Normal
0.5
312
Normal
0.5
195
Tumor
0.5
916
Normal
0.5
818
Normal
0.5
272
Normal
0.4
297
Tumor
0.4
881
Tumor
0.4
395
Tumor
0.4
721
Tumor
0.4
352
Normal
0.4
136
Normal
0.4
328
Normal
0.4
434
Normal
0.4
816
Normal
0.4
874
Normal
0.4
385
Tumor
0.4
284
Normal
0.3
213
Tumor
0.3
866
Normal
0.3
366
Normal
0.3
138
Normal
0.3
145
Tumor
0.3
661
Tumor
0.3
228
Normal
0.3
1042
Normal
0.3
365
Tumor
0.3
223
Tumor
0.3
558
Normal
0.3
332
Normal
0.3
956
Normal
0.3
368
Normal
0.3
1044
Normal
0.2
984
Normal
0.2
217
Tumor
0.2
671
Tumor
0.2
472
Normal
0.2
744
Normal
0.2
813
Tumor
0.2
413
Tumor
0.2
313
Tumor
0.2
424
Normal
0.2
883
Tumor
0.2
574
Normal
0.2
362
Normal
0.2
314
Normal
0.2
464
Normal
0.1
815
Tumor
0.1
448
Normal
0.1
124
Normal
0.1
364
Normal
0.1
298
Normal
0.1
428
Normal
0.1
978
Normal
0.1
968
Normal
0.1
456
Normal
0.1
214
Normal
0.1
351
Tumor
0.1
665
Tumor
0.1
1045
Tumor
0.1
344
Normal
0.1
662
Normal
0.1
976
Normal
0.1
396
Normal
0.1
422
Normal
0.1
817
Tumor
0.1
137
Tumor
0.1
278
Normal
0.1
388
Normal
0.1
868
Normal
0.1
461
Tumor
0.1
517
Tumor
0.1
467
Tumor
0.1
391
Tumor
0.1
111
Normal
0.0
232
Normal
0.0
722
Normal
0.0
882
Normal
0.0
132
Normal
0.0
142
Normal
0.0
852
Normal
0.0
394
Normal
0.0
343
Tumor
0.0
1046
Normal
0.0
196
Normal
0.0
355
Tumor
0.0
664
Normal
0.0
713
Tumor
0.0
697
Tumor
0.0
414
Normal
0.0
572
Normal
0.0
446
Normal
0.0
114
Normal
0.0
468
Normal
0.0
426
Normal
0.0
1032
Normal
0.0
376
Normal
0.0
975
Tumor
0.0
666
Normal
0.0
878
Normal
0.0
186
Normal
0.0
1016
Normal
0.0
546
Normal
0.0
433
Tumor
0.0
358
Normal
0.0
432
Normal
-0.1
474
Normal
-0.1
212
Normal
-0.1
1028
Normal
-0.1
471
Tumor
-0.1
392
Normal
-0.1
525
Tumor
-0.1
873
Tumor
-0.1
218
Normal
-0.1
964
Normal
-0.1
416
Normal
-0.1
617
Tumor
-0.1
966
Normal
-0.1
466
Normal
-0.1
641
Tumor
-0.1
363
Tumor
-0.1
642
Normal
-0.1
162
Normal
-0.1
715
Tumor
-0.1
113
Tumor
-0.1
1021
Tumor
-0.2
331
Tumor
-0.2
914
Normal
-0.2
161
Tumor
-0.2
786
Normal
-0.2
415
Tumor
-0.2
628
Normal
-0.2
526
Normal
-0.2
128
Normal
-0.2
148
Normal
-0.2
716
Normal
-0.2
912
Normal
-0.2
534
Normal
-0.2
862
Normal
-0.2
564
Normal
-0.2
618
Normal
-0.2
494
Normal
-0.3
724
Normal
-0.3
954
Normal
-0.3
1022
Normal
-0.3
463
Tumor
-0.3
1013
Tumor
-0.3
353
Tumor
-0.3
528
Normal
-0.3
488
Normal
-0.3
482
Normal
-0.3
493
Tumor
-0.3
742
Normal
-0.3
342
Normal
-0.3
286
Normal
-0.3
938
Normal
-0.3
573
Tumor
-0.3
943
Tumor
-0.3
462
Normal
-0.3
864
Normal
-0.3
361
Tumor
-0.3
452
Normal
-0.3
738
Normal
-0.4
616
Normal
-0.4
778
Normal
-0.4
858
Normal
-0.4
423
Tumor
-0.4
172
Normal
-0.4
636
Normal
-0.4
1026
Normal
-0.4
412
Normal
-0.4
924
Normal
-0.4
222
Normal
-0.4
537
Tumor
-0.4
913
Tumor
-0.4
483
Tumor
-0.4
867
Tumor
-0.4
568
Normal
-0.4
686
Normal
-0.4
277
Tumor
-0.4
484
Normal
-0.4
327
Tumor
-0.4
1014
Normal
-0.5
518
Normal
-0.5
723
Tumor
-0.5
926
Normal
-0.5
952
Normal
-0.5
857
Tumor
-0.5
698
Normal
-0.5
356
Normal
-0.5
728
Normal
-0.5
746
Normal
-0.5
367
Tumor
-0.5
923
Tumor
-0.5
918
Normal
-0.6
227
Tumor
-0.6
513
Tumor
-0.6
451
Tumor
-0.6
465
Tumor
-0.6
387
Tumor
-0.6
922
Normal
-0.6
436
Normal
-0.6
944
Normal
-0.6
953
Tumor
-0.6
1031
Tumor
-0.6
127
Tumor
-0.6
554
Normal
-0.6
921
Tumor
-0.6
258
Normal
-0.7
473
Tumor
-0.7
967
Tumor
-0.7
824
Normal
-0.7
648
Normal
-0.7
567
Tumor
-0.7
443
Tumor
-0.7
823
Tumor
-0.7
696
Normal
-0.7
756
Normal
-0.8
1015
Tumor
-0.8
425
Tumor
-0.8
861
Tumor
-0.8
1043
Tumor
-0.8
341
Tumor
-0.8
627
Tumor
-0.8
714
Normal
-0.9
285
Tumor
-0.9
112
Tumor
-0.9
431
Tumor
-0.9
481
Tumor
-0.9
663
Tumor
-0.9
221
Tumor
-0.9
955
Tumor
-1.0
1041
Tumor
-1.0
925
Tumor
-1.0
937
Tumor
-1.0
743
Tumor
-1.1
615
Tumor
-1.1
865
Tumor
-1.1
785
Tumor
-1.1
741
Tumor
-1.1
527
Tumor
-1.1
523
Tumor
-1.1
497
Tumor
-1.1
445
Tumor
-1.1
123
Tumor
-1.1
393
Tumor
-1.2
267
Tumor
-1.2
515
Tumor
-1.2
261
Tumor
-1.2
727
Tumor
-1.2
1027
Tumor
-1.3
951
Tumor
-1.3
1025
Tumor
-1.3
231
Tumor
-1.3
915
Tumor
-1.3
777
Tumor
-1.3
477
Tumor
-1.3
553
Tumor
-1.3
965
Tumor
-1.4
911
Tumor
-1.4
131
Tumor
-1.4
487
Tumor
-1.4
271
Tumor
-1.4
755
Tumor
-1.4
147
Tumor
-1.4
737
Tumor
-1.5
257
Tumor
-1.5
647
Tumor
-1.5
571
Tumor
-1.5
557
Tumor
-1.5
745
Tumor
-1.5
977
Tumor
-1.6
685
Tumor
-1.6
981
Tumor
-1.7
411
Tumor
-1.7
435
Tumor
-1.7
635
Tumor
-1.7
957
Tumor
-1.7
171
Tumor
-1.8
533
Tumor
-1.9
695
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.