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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
S100A10 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
291.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2221.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2106.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1783.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1663.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1519.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1309.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1270.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1198.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1022.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
978.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
814.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
744.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
733.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
725.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
705.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
702.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
701.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
687.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
650.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
645.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
630.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
625.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
619.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
613.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
612.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
602.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
583.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
583.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
569.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
569.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
566.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
561.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
559.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
558.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
556.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
555.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
550.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
550.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
548.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
522.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
520.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
505.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
501.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
500.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
499.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
496.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
486.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
483.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
482.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
481.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
479.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
476.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
472.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
471.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
467.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
462.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
457.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
448.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
448.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
447.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
439.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
437.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
429.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
426.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
423.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
418.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
413.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
410.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
408.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
407.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
404.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
404.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
403.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
399.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
390.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
387.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
383.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
383.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
381.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
378.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
373.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
370.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
369.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
368.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
367.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
365.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
357.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
357.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
354.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
353.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
350.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
349.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
348.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
345.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
344.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
342.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
341.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
340.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
337.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
332.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
330.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
329.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
329.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
329.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
329.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
327.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
326.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
325.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
325.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
323.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
322.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
322.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
321.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
320.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
315.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
315.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
309.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
308.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
305.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
303.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
302.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
300.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
298.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
298.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
296.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
296.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
295.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
293.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
292.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
292.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
289.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
289.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
288.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
287.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
285.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
283.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
279.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
277.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
277.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
277.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
277.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
276.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
273.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
272.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
271.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
270.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
268.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
267.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
265.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
263.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
263.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
260.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
259.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
258.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
258.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
257.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
257.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
256.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
256.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
255.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
252.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
252.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
250.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
250.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
247.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
246.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
243.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
243.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
239.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
239.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
237.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
236.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
236.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
235.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
234.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
233.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
231.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
231.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
230.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
229.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
228.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
227.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
226.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
226.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
226.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
224.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
224.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
224.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
223.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
223.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
221.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
220.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
220.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
220.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
220.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
220.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
220.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
218.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
218.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
218.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
217.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
216.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
214.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
210.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
204.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
202.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
202.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
202.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
202.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
202.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
202.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
200.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
200.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
199.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
197.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
197.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
197.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
195.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
194.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
193.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
189.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
189.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
189.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
187.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
187.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
187.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
186.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
186.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
185.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
184.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
184.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
182.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
182.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
182.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
181.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
179.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
178.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
178.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
178.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
177.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
177.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
177.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
177.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
177.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
174.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
173.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
173.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
168.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
168.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
167.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
165.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
164.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
162.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
161.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
160.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
160.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
158.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
158.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
156.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
156.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
155.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
152.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
151.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
150.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
148.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
146.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
145.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
144.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
142.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
142.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
141.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
138.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
134.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
134.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
133.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
133.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
132.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
128.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
128.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
127.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
126.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
125.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
123.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
122.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
121.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
121.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
121.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
121.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
120.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
120.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
119.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
118.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
117.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
114.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
113.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
113.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
112.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
112.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
111.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
110.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
109.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
109.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
109.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
105.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
104.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
104.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
101.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
101.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
100.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
97.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
93.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
91.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
90.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
87.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
86.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
86.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
84.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
84.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
83.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
82.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
79.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
73.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
73.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
67.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
65.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
65.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
65.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
64.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
64.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
64.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
63.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
59.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
59.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
57.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
56.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
56.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
53.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
52.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
49.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
48.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
47.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
46.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
44.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
42.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
40.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
39.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
36.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
36.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
34.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
34.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
22.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
S100A10 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
192.6
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
1356.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
1194.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1172.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
1075.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1041.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
934.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
854.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
808.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
753.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
748.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
699.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
624.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
606.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
588.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
556.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
534.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
475.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
431.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
419.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
406.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
395.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
370.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
327.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
319.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
318.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
310.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
308.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
308.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
307.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
307.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
284.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
284.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
281.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
276.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
273.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
272.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
267.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
266.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
266.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
262.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
260.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
258.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
256.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
255.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
254.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
251.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
248.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
246.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
241.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
239.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
226.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
224.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
222.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
219.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
219.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
219.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
218.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
214.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
213.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
209.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
207.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
206.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
205.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
203.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
202.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
201.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
200.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
198.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
197.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
196.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
195.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
191.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
190.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
186.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
186.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
186.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
183.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
182.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
182.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
181.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
179.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
174.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
174.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
172.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
170.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
170.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
165.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
165.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
163.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
163.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
163.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
161.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
159.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
158.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
158.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
157.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
155.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
154.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
150.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
150.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
146.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
143.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
142.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
140.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
138.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
137.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
137.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
136.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
136.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
135.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
134.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
133.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
133.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
133.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
131.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
131.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
129.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
129.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
128.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
128.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
127.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
127.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
127.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
124.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
124.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
124.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
123.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
122.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
121.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
119.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
119.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
116.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
115.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
115.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
114.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
114.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
114.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
113.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
111.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
111.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
111.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
111.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
110.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
109.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
109.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
108.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
107.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
106.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
105.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
105.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
104.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
103.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
103.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
103.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
99.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
98.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
98.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
98.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
97.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
97.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
97.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
94.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
93.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
92.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
92.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
92.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
91.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
89.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
89.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
88.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
88.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
88.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
88.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
86.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
86.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
82.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
79.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
78.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
78.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
77.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
76.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
76.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
74.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
74.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
73.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
73.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
71.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
70.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
70.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
67.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
66.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
66.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
66.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
62.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
59.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
58.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
57.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
57.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
57.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
56.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
52.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
52.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
51.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
51.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
51.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
48.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
48.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
47.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
45.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
44.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
44.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
42.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
42.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
41.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
36.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
35.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
34.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
32.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
26.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
26.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
1.4
477
Tumor
1.4
925
Tumor
1.4
311
Tumor
1.2
917
Tumor
1.2
283
Tumor
1.1
881
Tumor
1.1
911
Tumor
1.1
533
Tumor
1.0
478
Normal
1.0
131
Tumor
1.0
421
Tumor
1.0
685
Tumor
0.9
483
Tumor
0.9
953
Tumor
0.9
715
Tumor
0.9
455
Tumor
0.9
355
Tumor
0.9
427
Tumor
0.9
617
Tumor
0.9
737
Tumor
0.9
536
Normal
0.8
851
Tumor
0.8
527
Tumor
0.8
135
Tumor
0.8
1021
Tumor
0.7
525
Tumor
0.7
883
Tumor
0.7
445
Tumor
0.7
223
Tumor
0.7
921
Tumor
0.7
137
Tumor
0.7
375
Tumor
0.7
461
Tumor
0.7
1013
Tumor
0.7
857
Tumor
0.7
916
Normal
0.7
913
Tumor
0.7
492
Normal
0.6
444
Normal
0.6
413
Tumor
0.6
415
Tumor
0.6
867
Tumor
0.6
813
Tumor
0.6
977
Tumor
0.6
192
Normal
0.6
443
Tumor
0.6
535
Tumor
0.5
963
Tumor
0.5
513
Tumor
0.5
563
Tumor
0.5
363
Tumor
0.5
958
Normal
0.5
745
Tumor
0.5
538
Normal
0.5
545
Tumor
0.5
863
Tumor
0.5
741
Tumor
0.5
271
Tumor
0.4
185
Tumor
0.4
823
Tumor
0.4
423
Tumor
0.4
1045
Tumor
0.4
1041
Tumor
0.4
873
Tumor
0.4
387
Tumor
0.4
493
Tumor
0.4
1027
Tumor
0.4
923
Tumor
0.4
268
Normal
0.4
498
Normal
0.4
435
Tumor
0.3
224
Normal
0.3
852
Normal
0.3
814
Normal
0.3
447
Tumor
0.3
465
Tumor
0.3
515
Tumor
0.3
211
Tumor
0.3
433
Tumor
0.2
641
Tumor
0.2
557
Tumor
0.2
191
Tumor
0.2
635
Tumor
0.2
983
Tumor
0.2
187
Tumor
0.2
975
Tumor
0.2
567
Tumor
0.2
815
Tumor
0.2
473
Tumor
0.2
284
Normal
0.2
553
Tumor
0.2
516
Normal
0.2
524
Normal
0.2
341
Tumor
0.2
697
Tumor
0.2
491
Tumor
0.1
817
Tumor
0.1
1028
Normal
0.1
943
Tumor
0.1
558
Normal
0.1
785
Tumor
0.1
1031
Tumor
0.1
554
Normal
0.1
297
Tumor
0.1
267
Tumor
0.1
976
Normal
0.1
868
Normal
0.1
327
Tumor
0.1
431
Tumor
0.1
956
Normal
0.1
1043
Tumor
0.1
874
Normal
0.0
647
Tumor
0.0
472
Normal
0.0
357
Tumor
0.0
161
Tumor
0.0
127
Tumor
0.0
474
Normal
0.0
188
Normal
0.0
537
Tumor
0.0
147
Tumor
0.0
451
Tumor
0.0
112
Tumor
0.0
665
Tumor
0.0
954
Normal
0.0
364
Normal
0.0
746
Normal
0.0
328
Normal
0.0
212
Normal
-0.1
816
Normal
-0.1
957
Tumor
-0.1
146
Normal
-0.1
744
Normal
-0.1
228
Normal
-0.1
721
Tumor
-0.1
778
Normal
-0.1
145
Tumor
-0.1
915
Tumor
-0.1
738
Normal
-0.1
517
Tumor
-0.1
126
Normal
-0.1
416
Normal
-0.1
231
Tumor
-0.1
312
Normal
-0.1
546
Normal
-0.1
924
Normal
-0.1
384
Normal
-0.1
716
Normal
-0.1
728
Normal
-0.1
213
Tumor
-0.1
1015
Tumor
-0.1
141
Tumor
-0.1
113
Tumor
-0.1
383
Tumor
-0.1
1032
Normal
-0.1
257
Tumor
-0.1
528
Normal
-0.2
1042
Normal
-0.2
777
Tumor
-0.2
695
Tumor
-0.2
434
Normal
-0.2
968
Normal
-0.2
756
Normal
-0.2
412
Normal
-0.2
966
Normal
-0.2
534
Normal
-0.2
952
Normal
-0.2
195
Tumor
-0.2
861
Tumor
-0.2
984
Normal
-0.2
494
Normal
-0.2
446
Normal
-0.2
918
Normal
-0.2
391
Tumor
-0.2
448
Normal
-0.3
466
Normal
-0.3
723
Tumor
-0.3
277
Tumor
-0.3
488
Normal
-0.3
672
Normal
-0.3
884
Normal
-0.3
386
Normal
-0.3
171
Tumor
-0.3
722
Normal
-0.3
385
Tumor
-0.3
424
Normal
-0.3
262
Normal
-0.3
422
Normal
-0.3
696
Normal
-0.3
878
Normal
-0.3
686
Normal
-0.3
331
Tumor
-0.3
1044
Normal
-0.3
978
Normal
-0.3
965
Tumor
-0.3
354
Normal
-0.3
462
Normal
-0.3
353
Tumor
-0.3
574
Normal
-0.4
138
Normal
-0.4
272
Normal
-0.4
514
Normal
-0.4
125
Tumor
-0.4
468
Normal
-0.4
481
Tumor
-0.4
944
Normal
-0.4
214
Normal
-0.4
285
Tumor
-0.4
414
Normal
-0.4
786
Normal
-0.4
864
Normal
-0.4
926
Normal
-0.4
356
Normal
-0.4
365
Tumor
-0.4
432
Normal
-0.4
463
Tumor
-0.4
426
Normal
-0.4
713
Tumor
-0.5
742
Normal
-0.5
714
Normal
-0.5
982
Normal
-0.5
938
Normal
-0.5
1022
Normal
-0.5
136
Normal
-0.5
278
Normal
-0.5
955
Tumor
-0.5
313
Tumor
-0.5
452
Normal
-0.5
482
Normal
-0.5
361
Tumor
-0.5
627
Tumor
-0.5
124
Normal
-0.5
186
Normal
-0.5
922
Normal
-0.5
882
Normal
-0.5
573
Tumor
-0.5
755
Tumor
-0.5
352
Normal
-0.5
456
Normal
-0.5
172
Normal
-0.6
1026
Normal
-0.6
662
Normal
-0.6
332
Normal
-0.6
487
Tumor
-0.6
618
Normal
-0.6
642
Normal
-0.6
671
Tumor
-0.6
616
Normal
-0.6
866
Normal
-0.6
615
Tumor
-0.6
314
Normal
-0.6
661
Tumor
-0.6
663
Tumor
-0.6
428
Normal
-0.6
467
Tumor
-0.6
664
Normal
-0.6
964
Normal
-0.6
484
Normal
-0.6
344
Normal
-0.6
286
Normal
-0.6
261
Tumor
-0.6
912
Normal
-0.7
937
Tumor
-0.7
724
Normal
-0.7
232
Normal
-0.7
497
Tumor
-0.7
818
Normal
-0.7
526
Normal
-0.7
388
Normal
-0.7
395
Tumor
-0.7
142
Normal
-0.7
162
Normal
-0.7
564
Normal
-0.7
914
Normal
-0.7
464
Normal
-0.7
148
Normal
-0.7
298
Normal
-0.7
1014
Normal
-0.7
628
Normal
-0.7
394
Normal
-0.7
132
Normal
-0.7
436
Normal
-0.7
666
Normal
-0.7
227
Tumor
-0.7
648
Normal
-0.7
392
Normal
-0.7
128
Normal
-0.8
518
Normal
-0.8
824
Normal
-0.8
967
Tumor
-0.8
727
Tumor
-0.8
196
Normal
-0.8
572
Normal
-0.8
1046
Normal
-0.8
217
Tumor
-0.8
218
Normal
-0.8
636
Normal
-0.8
396
Normal
-0.8
425
Tumor
-0.8
698
Normal
-0.8
343
Tumor
-0.8
111
Normal
-0.8
865
Tumor
-0.8
342
Normal
-0.9
411
Tumor
-0.9
362
Normal
-0.9
221
Tumor
-0.9
258
Normal
-0.9
367
Tumor
-0.9
571
Tumor
-0.9
858
Normal
-0.9
366
Normal
-0.9
877
Tumor
-0.9
114
Normal
-0.9
358
Normal
-1.0
951
Tumor
-1.0
862
Normal
-1.0
1025
Tumor
-1.0
743
Tumor
-1.0
222
Normal
-1.1
123
Tumor
-1.1
1016
Normal
-1.1
568
Normal
-1.1
393
Tumor
-1.1
376
Normal
-1.2
523
Tumor
-1.2
981
Tumor
-1.3
368
Normal
-1.3
351
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.