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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTMA is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
605.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2173.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2061.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1828.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1689.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1608.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1533.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1494.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1379.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1377.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1348.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1291.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1285.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1224.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1219.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1219.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1214.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1181.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1167.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1164.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1151.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1142.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1119.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1115.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1070.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1068.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1064.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1041.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1038.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1035.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1034.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1020.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1018.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1008.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1007.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
977.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
971.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
966.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
955.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
937.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
931.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
927.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
923.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
922.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
915.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
912.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
911.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
909.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
899.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
897.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
892.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
891.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
876.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
874.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
866.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
860.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
859.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
858.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
849.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
842.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
835.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
833.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
826.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
826.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
822.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
813.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
811.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
811.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
809.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
809.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
805.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
803.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
799.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
793.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
790.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
782.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
779.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
777.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
774.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
771.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
765.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
764.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
763.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
756.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
752.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
751.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
749.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
741.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
739.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
733.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
733.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
725.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
724.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
719.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
718.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
716.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
715.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
711.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
711.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
706.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
703.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
695.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
693.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
692.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
692.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
692.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
691.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
689.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
686.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
685.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
683.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
683.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
683.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
682.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
682.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
681.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
678.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
672.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
666.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
666.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
662.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
662.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
659.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
651.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
651.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
647.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
639.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
638.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
635.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
631.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
624.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
622.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
620.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
620.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
616.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
613.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
608.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
607.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
605.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
604.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
599.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
599.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
598.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
596.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
596.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
595.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
595.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
591.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
590.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
584.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
583.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
582.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
579.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
576.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
574.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
570.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
569.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
566.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
565.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
565.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
564.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
563.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
561.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
559.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
554.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
553.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
551.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
548.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
545.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
545.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
543.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
541.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
541.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
540.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
540.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
539.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
538.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
537.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
537.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
537.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
537.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
537.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
536.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
535.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
535.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
534.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
532.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
531.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
529.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
524.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
523.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
523.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
520.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
520.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
518.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
513.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
511.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
511.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
510.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
507.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
507.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
507.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
505.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
504.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
504.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
503.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
503.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
501.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
499.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
498.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
498.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
496.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
495.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
491.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
487.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
486.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
482.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
480.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
477.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
477.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
475.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
474.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
469.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
468.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
467.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
466.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
465.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
464.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
464.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
463.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
462.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
462.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
460.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
459.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
452.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
452.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
452.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
452.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
451.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
451.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
450.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
449.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
445.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
443.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
443.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
442.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
439.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
436.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
435.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
434.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
433.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
433.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
431.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
431.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
431.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
429.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
428.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
427.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
421.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
421.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
420.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
420.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
420.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
419.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
417.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
416.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
410.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
410.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
410.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
409.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
409.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
406.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
406.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
406.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
405.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
405.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
404.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
403.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
403.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
401.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
401.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
399.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
398.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
398.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
397.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
396.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
393.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
391.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
390.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
390.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
389.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
387.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
386.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
386.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
382.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
382.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
381.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
380.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
378.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
374.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
374.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
369.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
369.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
368.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
363.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
363.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
362.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
361.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
360.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
360.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
358.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
357.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
353.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
351.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
350.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
350.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
350.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
349.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
349.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
349.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
348.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
344.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
344.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
339.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
333.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
333.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
331.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
324.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
323.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
322.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
322.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
322.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
316.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
310.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
307.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
306.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
303.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
299.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
296.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
291.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
283.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
277.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
275.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
273.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
272.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
272.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
270.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
270.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
270.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
266.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
261.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
260.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
254.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
238.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
233.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
228.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
218.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
209.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
190.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
189.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
177.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
149.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTMA is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
558.8
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1860.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1590.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
1459.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1405.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
1393.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
1307.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
1222.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
1189.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
1174.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
1150.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
1144.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
1126.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
1104.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1080.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
1067.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
1030.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
1026.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
994.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
959.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
919.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
915.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
910.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
909.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
901.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
880.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
880.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
864.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
863.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
845.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
825.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
821.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
816.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
807.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
793.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
788.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
777.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
777.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
772.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
767.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
761.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
759.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
750.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
736.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
732.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
731.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
729.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
727.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
724.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
721.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
721.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
703.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
703.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
700.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
694.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
680.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
680.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
679.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
675.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
670.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
668.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
665.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
664.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
663.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
662.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
654.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
639.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
631.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
623.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
622.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
622.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
615.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
613.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
612.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
610.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
608.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
607.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
600.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
600.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
597.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
594.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
591.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
590.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
590.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
583.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
579.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
572.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
571.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
567.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
562.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
561.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
559.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
558.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
556.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
552.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
550.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
550.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
549.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
548.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
546.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
544.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
540.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
539.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
537.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
537.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
533.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
531.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
524.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
519.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
513.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
512.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
506.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
505.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
505.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
503.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
500.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
499.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
497.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
496.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
489.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
488.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
486.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
484.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
484.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
483.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
481.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
476.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
475.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
473.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
472.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
464.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
460.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
460.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
451.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
450.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
449.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
448.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
445.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
441.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
440.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
440.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
435.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
435.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
435.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
431.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
431.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
430.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
426.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
424.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
423.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
421.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
416.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
415.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
415.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
413.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
412.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
406.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
401.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
400.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
399.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
397.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
394.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
393.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
392.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
391.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
388.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
386.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
386.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
386.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
386.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
384.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
377.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
375.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
372.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
368.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
368.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
366.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
366.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
366.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
365.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
363.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
363.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
362.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
360.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
358.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
354.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
350.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
347.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
346.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
345.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
343.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
339.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
339.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
338.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
338.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
338.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
336.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
334.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
334.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
332.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
331.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
329.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
318.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
310.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
303.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
300.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
297.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
290.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
289.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
280.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
278.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
276.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
272.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
269.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
262.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
260.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
259.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
251.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
246.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
241.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
241.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
239.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
238.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
223.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
215.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
209.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
202.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
201.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
193.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
191.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
180.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
132.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.7
211
Tumor
1.7
497
Tumor
1.6
743
Tumor
1.6
357
Tumor
1.2
355
Tumor
1.2
411
Tumor
1.0
473
Tumor
1.0
1025
Tumor
1.0
814
Normal
1.0
297
Tumor
1.0
957
Tumor
1.0
917
Tumor
0.9
963
Tumor
0.9
567
Tumor
0.9
517
Tumor
0.9
953
Tumor
0.9
823
Tumor
0.8
813
Tumor
0.8
387
Tumor
0.8
545
Tumor
0.8
1013
Tumor
0.8
535
Tumor
0.8
737
Tumor
0.8
427
Tumor
0.8
965
Tumor
0.8
571
Tumor
0.8
1031
Tumor
0.8
311
Tumor
0.8
527
Tumor
0.8
525
Tumor
0.7
425
Tumor
0.7
951
Tumor
0.7
923
Tumor
0.7
431
Tumor
0.7
724
Normal
0.7
351
Tumor
0.7
661
Tumor
0.7
161
Tumor
0.7
447
Tumor
0.7
943
Tumor
0.6
283
Tumor
0.6
697
Tumor
0.6
695
Tumor
0.6
313
Tumor
0.6
483
Tumor
0.6
343
Tumor
0.6
493
Tumor
0.6
227
Tumor
0.6
433
Tumor
0.6
277
Tumor
0.6
727
Tumor
0.6
983
Tumor
0.6
487
Tumor
0.6
967
Tumor
0.6
977
Tumor
0.5
877
Tumor
0.5
533
Tumor
0.5
443
Tumor
0.5
445
Tumor
0.5
663
Tumor
0.5
573
Tumor
0.5
478
Normal
0.5
1021
Tumor
0.5
536
Normal
0.5
863
Tumor
0.5
715
Tumor
0.4
685
Tumor
0.4
455
Tumor
0.4
492
Normal
0.4
463
Tumor
0.4
171
Tumor
0.4
523
Tumor
0.4
465
Tumor
0.4
671
Tumor
0.4
498
Normal
0.4
721
Tumor
0.4
524
Normal
0.4
975
Tumor
0.4
665
Tumor
0.4
647
Tumor
0.4
615
Tumor
0.4
883
Tumor
0.4
423
Tumor
0.4
861
Tumor
0.4
231
Tumor
0.4
213
Tumor
0.4
444
Normal
0.3
285
Tumor
0.3
185
Tumor
0.3
268
Normal
0.3
223
Tumor
0.3
331
Tumor
0.3
413
Tumor
0.3
361
Tumor
0.3
383
Tumor
0.3
557
Tumor
0.3
865
Tumor
0.3
385
Tumor
0.3
1041
Tumor
0.3
435
Tumor
0.3
191
Tumor
0.3
873
Tumor
0.3
415
Tumor
0.3
785
Tumor
0.3
125
Tumor
0.3
563
Tumor
0.3
267
Tumor
0.3
141
Tumor
0.2
881
Tumor
0.2
817
Tumor
0.2
537
Tumor
0.2
635
Tumor
0.2
966
Normal
0.2
421
Tumor
0.2
393
Tumor
0.2
112
Tumor
0.2
741
Tumor
0.2
471
Tumor
0.2
857
Tumor
0.1
461
Tumor
0.1
713
Tumor
0.1
491
Tumor
0.1
978
Normal
0.1
553
Tumor
0.1
217
Tumor
0.1
367
Tumor
0.1
271
Tumor
0.1
958
Normal
0.1
192
Normal
0.1
434
Normal
0.1
672
Normal
0.1
937
Tumor
0.1
516
Normal
0.1
976
Normal
0.1
195
Tumor
0.1
538
Normal
0.1
716
Normal
0.1
1045
Tumor
0.1
777
Tumor
0.0
867
Tumor
0.0
135
Tumor
0.0
515
Tumor
0.0
375
Tumor
0.0
363
Tumor
0.0
916
Normal
0.0
187
Tumor
0.0
212
Normal
0.0
913
Tumor
0.0
481
Tumor
0.0
467
Tumor
0.0
188
Normal
0.0
137
Tumor
0.0
964
Normal
0.0
744
Normal
-0.1
755
Tumor
-0.1
641
Tumor
-0.1
756
Normal
-0.1
488
Normal
-0.1
686
Normal
-0.1
224
Normal
-0.1
146
Normal
-0.1
327
Tumor
-0.1
666
Normal
-0.1
921
Tumor
-0.1
391
Tumor
-0.1
954
Normal
-0.1
341
Tumor
-0.1
696
Normal
-0.1
364
Normal
-0.1
662
Normal
-0.1
664
Normal
-0.1
353
Tumor
-0.1
786
Normal
-0.1
451
Tumor
-0.1
432
Normal
-0.1
261
Tumor
-0.1
714
Normal
-0.1
384
Normal
-0.1
477
Tumor
-0.1
778
Normal
-0.1
484
Normal
-0.2
412
Normal
-0.2
518
Normal
-0.2
344
Normal
-0.2
955
Tumor
-0.2
257
Tumor
-0.2
472
Normal
-0.2
554
Normal
-0.2
1032
Normal
-0.2
944
Normal
-0.2
914
Normal
-0.2
924
Normal
-0.2
746
Normal
-0.2
858
Normal
-0.2
386
Normal
-0.2
1015
Tumor
-0.2
1028
Normal
-0.2
147
Tumor
-0.2
145
Tumor
-0.2
494
Normal
-0.2
648
Normal
-0.2
395
Tumor
-0.2
952
Normal
-0.2
1022
Normal
-0.2
426
Normal
-0.2
546
Normal
-0.2
446
Normal
-0.3
878
Normal
-0.3
1043
Tumor
-0.3
126
Normal
-0.3
284
Normal
-0.3
482
Normal
-0.3
352
Normal
-0.3
968
Normal
-0.3
852
Normal
-0.3
938
Normal
-0.3
262
Normal
-0.3
926
Normal
-0.3
526
Normal
-0.3
514
Normal
-0.3
127
Tumor
-0.3
328
Normal
-0.3
1044
Normal
-0.3
558
Normal
-0.3
362
Normal
-0.3
1042
Normal
-0.3
925
Tumor
-0.3
228
Normal
-0.3
474
Normal
-0.3
745
Tumor
-0.3
815
Tumor
-0.3
448
Normal
-0.3
272
Normal
-0.3
918
Normal
-0.3
312
Normal
-0.3
356
Normal
-0.3
462
Normal
-0.3
874
Normal
-0.3
627
Tumor
-0.3
424
Normal
-0.3
162
Normal
-0.3
984
Normal
-0.4
534
Normal
-0.4
617
Tumor
-0.4
922
Normal
-0.4
528
Normal
-0.4
123
Tumor
-0.4
698
Normal
-0.4
1046
Normal
-0.4
416
Normal
-0.4
628
Normal
-0.4
1026
Normal
-0.4
738
Normal
-0.4
258
Normal
-0.4
868
Normal
-0.4
221
Tumor
-0.4
956
Normal
-0.4
138
Normal
-0.4
981
Tumor
-0.4
428
Normal
-0.4
422
Normal
-0.4
1014
Normal
-0.4
366
Normal
-0.4
728
Normal
-0.4
864
Normal
-0.4
722
Normal
-0.4
982
Normal
-0.4
392
Normal
-0.4
365
Tumor
-0.4
396
Normal
-0.4
388
Normal
-0.4
572
Normal
-0.4
286
Normal
-0.5
136
Normal
-0.5
358
Normal
-0.5
394
Normal
-0.5
1016
Normal
-0.5
298
Normal
-0.5
1027
Tumor
-0.5
915
Tumor
-0.5
354
Normal
-0.5
148
Normal
-0.5
214
Normal
-0.5
456
Normal
-0.5
851
Tumor
-0.5
414
Normal
-0.5
723
Tumor
-0.5
172
Normal
-0.5
866
Normal
-0.5
368
Normal
-0.5
912
Normal
-0.5
332
Normal
-0.5
232
Normal
-0.5
142
Normal
-0.5
618
Normal
-0.5
278
Normal
-0.5
862
Normal
-0.5
464
Normal
-0.6
342
Normal
-0.6
124
Normal
-0.6
113
Tumor
-0.6
884
Normal
-0.6
742
Normal
-0.6
222
Normal
-0.6
114
Normal
-0.6
574
Normal
-0.6
218
Normal
-0.6
824
Normal
-0.6
564
Normal
-0.6
513
Tumor
-0.6
816
Normal
-0.6
196
Normal
-0.6
186
Normal
-0.7
436
Normal
-0.7
468
Normal
-0.7
882
Normal
-0.7
616
Normal
-0.7
636
Normal
-0.7
568
Normal
-0.7
132
Normal
-0.7
466
Normal
-0.7
911
Tumor
-0.7
376
Normal
-0.7
642
Normal
-0.8
452
Normal
-0.8
818
Normal
-0.9
111
Normal
-0.9
314
Normal
-0.9
128
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
