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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPATA13 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
45.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPATA13 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.2
Number of samples
231
Samples
Sample
Description
TPM
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
27.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
536
Normal
1.1
923
Tumor
1.0
661
Tumor
0.9
1031
Tumor
0.9
1013
Tumor
0.8
477
Tumor
0.8
385
Tumor
0.7
375
Tumor
0.7
724
Normal
0.7
951
Tumor
0.7
883
Tumor
0.7
473
Tumor
0.6
471
Tumor
0.6
141
Tumor
0.6
411
Tumor
0.6
917
Tumor
0.6
535
Tumor
0.6
492
Normal
0.5
447
Tumor
0.5
1043
Tumor
0.5
211
Tumor
0.5
487
Tumor
0.5
817
Tumor
0.5
444
Normal
0.4
137
Tumor
0.4
516
Normal
0.4
478
Normal
0.4
727
Tumor
0.4
161
Tumor
0.4
415
Tumor
0.4
1025
Tumor
0.4
881
Tumor
0.4
434
Normal
0.4
112
Tumor
0.4
413
Tumor
0.4
538
Normal
0.4
978
Normal
0.4
721
Tumor
0.4
857
Tumor
0.4
956
Normal
0.4
224
Normal
0.4
713
Tumor
0.4
852
Normal
0.4
142
Normal
0.4
185
Tumor
0.4
138
Normal
0.3
916
Normal
0.3
467
Tumor
0.3
396
Normal
0.3
445
Tumor
0.3
423
Tumor
0.3
491
Tumor
0.3
498
Normal
0.3
228
Normal
0.3
146
Normal
0.3
1042
Normal
0.3
695
Tumor
0.3
943
Tumor
0.3
386
Normal
0.3
483
Tumor
0.3
392
Normal
0.3
383
Tumor
0.3
388
Normal
0.3
814
Normal
0.3
427
Tumor
0.3
497
Tumor
0.3
914
Normal
0.3
686
Normal
0.3
1041
Tumor
0.3
136
Normal
0.3
394
Normal
0.3
818
Normal
0.3
816
Normal
0.3
1032
Normal
0.3
493
Tumor
0.3
481
Tumor
0.3
743
Tumor
0.3
431
Tumor
0.2
1021
Tumor
0.2
778
Normal
0.2
858
Normal
0.2
343
Tumor
0.2
284
Normal
0.2
785
Tumor
0.2
955
Tumor
0.2
526
Normal
0.2
1044
Normal
0.2
384
Normal
0.2
954
Normal
0.2
823
Tumor
0.2
554
Normal
0.2
223
Tumor
0.2
723
Tumor
0.2
983
Tumor
0.2
362
Normal
0.2
918
Normal
0.2
422
Normal
0.2
944
Normal
0.2
697
Tumor
0.2
426
Normal
0.2
824
Normal
0.2
518
Normal
0.2
926
Normal
0.2
425
Tumor
0.2
424
Normal
0.2
924
Normal
0.2
286
Normal
0.2
113
Tumor
0.2
162
Normal
0.2
395
Tumor
0.2
953
Tumor
0.2
867
Tumor
0.2
975
Tumor
0.2
884
Normal
0.2
366
Normal
0.2
421
Tumor
0.2
1015
Tumor
0.2
494
Normal
0.1
716
Normal
0.1
524
Normal
0.1
126
Normal
0.1
553
Tumor
0.1
874
Normal
0.1
968
Normal
0.1
212
Normal
0.1
952
Normal
0.1
922
Normal
0.1
1028
Normal
0.1
915
Tumor
0.1
534
Normal
0.1
756
Normal
0.1
357
Tumor
0.1
715
Tumor
0.1
311
Tumor
0.1
913
Tumor
0.1
528
Normal
0.1
187
Tumor
0.1
738
Normal
0.1
188
Normal
0.1
414
Normal
0.1
977
Tumor
0.1
938
Normal
0.1
525
Tumor
0.1
546
Normal
0.1
882
Normal
0.1
878
Normal
0.1
786
Normal
0.1
231
Tumor
0.1
963
Tumor
0.1
277
Tumor
0.1
912
Normal
0.1
696
Normal
0.1
283
Tumor
0.1
435
Tumor
0.1
873
Tumor
0.1
984
Normal
0.1
744
Normal
0.1
461
Tumor
0.1
545
Tumor
0.1
365
Tumor
0.1
1022
Normal
0.1
728
Normal
0.1
877
Tumor
0.1
451
Tumor
0.0
331
Tumor
0.0
523
Tumor
0.0
966
Normal
0.0
455
Tumor
0.0
271
Tumor
0.0
868
Normal
0.0
742
Normal
0.0
332
Normal
0.0
537
Tumor
0.0
1014
Normal
0.0
393
Tumor
0.0
298
Normal
0.0
452
Normal
0.0
354
Normal
0.0
964
Normal
0.0
132
Normal
0.0
448
Normal
0.0
965
Tumor
0.0
363
Tumor
0.0
472
Normal
0.0
813
Tumor
0.0
714
Normal
0.0
428
Normal
0.0
124
Normal
0.0
921
Tumor
0.0
1026
Normal
0.0
172
Normal
0.0
432
Normal
0.0
815
Tumor
0.0
313
Tumor
0.0
364
Normal
0.0
862
Normal
0.0
297
Tumor
0.0
268
Normal
0.0
312
Normal
0.0
925
Tumor
0.0
851
Tumor
0.0
344
Normal
0.0
777
Tumor
-0.1
355
Tumor
-0.1
982
Normal
-0.1
1016
Normal
-0.1
114
Normal
-0.1
746
Normal
-0.1
446
Normal
-0.1
278
Normal
-0.1
456
Normal
-0.1
488
Normal
-0.1
148
Normal
-0.1
484
Normal
-0.1
937
Tumor
-0.1
352
Normal
-0.1
866
Normal
-0.1
416
Normal
-0.1
127
Tumor
-0.1
513
Tumor
-0.1
358
Normal
-0.1
722
Normal
-0.1
482
Normal
-0.1
227
Tumor
-0.1
514
Normal
-0.1
391
Tumor
-0.1
958
Normal
-0.1
462
Normal
-0.1
387
Tumor
-0.1
517
Tumor
-0.1
468
Normal
-0.1
342
Normal
-0.1
262
Normal
-0.2
111
Normal
-0.2
976
Normal
-0.2
861
Tumor
-0.2
1046
Normal
-0.2
131
Tumor
-0.2
863
Tumor
-0.2
1045
Tumor
-0.2
376
Normal
-0.2
474
Normal
-0.2
463
Tumor
-0.2
328
Normal
-0.2
412
Normal
-0.2
135
Tumor
-0.2
864
Normal
-0.2
145
Tumor
-0.2
272
Normal
-0.2
436
Normal
-0.2
285
Tumor
-0.2
515
Tumor
-0.2
123
Tumor
-0.2
314
Normal
-0.2
573
Tumor
-0.2
341
Tumor
-0.2
466
Normal
-0.2
171
Tumor
-0.2
368
Normal
-0.2
1027
Tumor
-0.2
574
Normal
-0.2
464
Normal
-0.2
125
Tumor
-0.2
558
Normal
-0.3
755
Tumor
-0.3
698
Normal
-0.3
258
Normal
-0.3
356
Normal
-0.3
967
Tumor
-0.3
257
Tumor
-0.3
671
Tumor
-0.3
353
Tumor
-0.3
957
Tumor
-0.3
981
Tumor
-0.3
361
Tumor
-0.3
527
Tumor
-0.4
327
Tumor
-0.4
128
Normal
-0.4
662
Normal
-0.4
443
Tumor
-0.4
685
Tumor
-0.4
267
Tumor
-0.4
232
Normal
-0.4
261
Tumor
-0.4
351
Tumor
-0.4
147
Tumor
-0.4
186
Normal
-0.4
911
Tumor
-0.4
741
Tumor
-0.4
563
Tumor
-0.4
367
Tumor
-0.4
433
Tumor
-0.5
533
Tumor
-0.5
465
Tumor
-0.5
663
Tumor
-0.5
572
Normal
-0.5
557
Tumor
-0.5
737
Tumor
-0.5
564
Normal
-0.6
664
Normal
-0.6
568
Normal
-0.6
665
Tumor
-0.8
672
Normal
-0.8
647
Tumor
-0.8
865
Tumor
-0.8
666
Normal
-0.8
745
Tumor
-0.9
648
Normal
-0.9
567
Tumor
-1.2
571
Tumor
-1.2
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
