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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
258.9
nTPM
HPA Brain:
115.6
nTPM
GTEx:
258.9
nTPM
FANTOM5:
88.4
Scaled Tags Per Million
Pig:
147.1
nTPM
Mouse:
99.6
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
115.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 84.5
2411
Female, age 72, unknown
115.4
1870
Female, age 42, unknown
101.7
2019
Male, age 18, unknown
96.5
2586
Male, age 75, left hemisphere
86.5
1830
Male, age 51, unknown
85.4
2219
Male, age 76, both hemispheres
84.0
1833
Male, age 53, unknown
81.8
1827
Male, age 72, unknown
77.0
2828
Female, age 72, unknown
58.5
2666
Male, age 74, left hemisphere
58.2
Dorsal raphe nucleus nTPM: 103.9
2750
Male, age 76, both hemispheres
113.5
2298
Female, age 72, unknown
111.1
2047
Male, age 72, unknown
102.9
1828
Male, age 53, unknown
100.7
2016
Female, age 72, unknown
91.4
Inferior colliculus nTPM: 97.6
2097
Female, age 72, unknown
117.4
1890
Male, age 53, unknown
101.4
1848
Female, age 42, unknown
95.8
2849
Male, age 72, unknown
75.9
Median raphe nucleus nTPM: 108.1
2220
Male, age 76, midline
108.1
Periaquaductal grey, anterior nTPM: 84.9
2502
Female, age 75, unknown
91.6
1947
Male, age 18, unknown
90.8
1795
Male, age 51, unknown
72.3
Periaquaductal grey, dorsal nTPM: 81.3
1840
Male, age 53, unknown
89.5
2464
Female, age 72, unknown
82.7
2850
Male, age 76, both hemispheres
81.1
1831
Male, age 72, unknown
71.9
Periaquaductal grey, lateral nTPM: 71.6
2053
Male, age 18, unknown
78.5
2272
Male, age 74, both hemispheres
72.3
2140
Male, age 76, both hemispheres
64.1
Pretectal area nTPM: 91.9
2667
Female, age 75, unknown
114.5
1944
Female, age 72, unknown
109.0
1816
Male, age 51, unknown
105.9
1817
Female, age 42, unknown
104.2
2007
Male, age 72, unknown
101.8
2224
Female, age 72, unknown
101.6
1815
Male, age 53, unknown
96.5
2273
Male, age 74, both hemispheres
76.9
2825
Male, age 18, unknown
73.5
2316
Male, age 76, right hemisphere
67.7
2407
Male, age 75, both hemispheres
58.9
Red nucleus nTPM: 96.4
1821
Female, age 72, unknown
143.8
1865
Male, age 51, unknown
108.5
2503
Female, age 72, unknown
103.7
1904
Male, age 53, unknown
100.7
1954
Female, age 42, unknown
100.0
2823
Male, age 76, right hemisphere
95.4
2769
Male, age 72, unknown
94.9
2227
Male, age 72, unknown
93.4
2725
Female, age 75, unknown
92.5
2785
Male, age 18, unknown
88.1
2588
Male, age 74, left hemisphere
69.1
2584
Male, age 75, left hemisphere
66.8
Substantia nigra nTPM: 115.6
2241
Male, age 72, unknown
173.6
2409
Female, age 72, unknown
149.0
1916
Female, age 42, unknown
134.2
1851
Male, age 51, unknown
122.9
1889
Female, age 72, unknown
119.1
1941
Male, age 53, unknown
112.9
2699
Male, age 18, unknown
101.3
2665
Male, age 74, both hemispheres
93.9
2583
Male, age 75, right hemisphere
82.0
2590
Female, age 75, unknown
66.8
Superior colliculus nTPM: 82.3
2668
Female, age 75, unknown
101.2
2587
Male, age 74, left hemisphere
91.9
2087
Female, age 72, unknown
91.8
2261
Male, age 18, unknown
85.8
1895
Male, age 76, right hemisphere
85.6
1913
Female, age 42, unknown
81.7
1796
Male, age 53, unknown
76.1
1995
Male, age 72, unknown
72.4
1839
Male, age 51, unknown
70.0
2664
Male, age 75, both hemispheres
66.6
Ventral tegmental area nTPM: 113.7
2223
Female, age 72, unknown
133.9
2410
Female, age 72, unknown
129.0
1915
Female, age 42, unknown
117.7
2218
Male, age 76, both hemispheres
107.6
1942
Male, age 51, unknown
99.9
2021
Male, age 53, unknown
94.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
258.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 258.9
Samples: 139
Max nTPM: 507.1
Min nTPM: 135.0
Std nTPM: 56.0
Median nTPM: 257.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
507.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
420.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
389.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
388.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
381.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
373.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
370.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
347.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
345.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
344.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
342.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
335.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
332.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
332.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
328.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
326.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
323.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
320.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
316.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
307.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
306.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
306.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
303.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
300.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
296.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
295.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
294.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
294.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
294.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
292.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
290.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
290.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
290.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
290.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
289.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
288.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
287.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
287.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
282.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
282.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
281.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
280.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
280.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
278.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
277.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
275.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
274.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
273.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
273.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
273.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
272.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
271.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
271.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
271.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
270.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
270.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
269.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
268.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
267.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
266.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
264.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
263.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
262.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
260.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
260.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
260.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
260.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
258.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
258.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
257.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
252.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
251.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
251.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
250.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
250.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
248.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
247.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
247.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
246.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
245.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
245.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
242.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
242.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
241.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
241.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
239.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
238.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
237.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
236.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
233.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
233.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
232.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
230.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
229.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
229.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
229.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
228.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
227.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
227.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
226.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
225.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
224.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
223.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
223.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
222.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
221.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
219.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
218.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
217.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
213.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
212.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
212.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
211.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
208.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
207.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
207.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
206.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
205.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
205.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
204.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
204.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
203.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
197.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
196.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
196.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
191.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
191.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
190.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
189.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
189.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
188.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
183.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
183.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
174.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
169.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
157.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
151.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
147.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
135.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
99.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 99.6
Samples: 4
Max nTPM: 107.3
Min nTPM: 96.0
Sample A
Male
107.3
Sample B
Male
96.0
Sample C
Female
98.2
Sample D
Female
97.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.