BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:195.9 nTPM
HPA Brain:93.6 nTPM
GTEx:195.9 nTPM
FANTOM5:109.2 Scaled Tags Per Million
Pig:131.9 nTPM
Mouse:86.5 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA043336
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 93.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 84.8
2481 Female, age 94, left hemisphere 115.2
2288 Male, age 75, left hemisphere 99.2
1857 Female, age 85, left hemisphere 87.7
2846 Female, age 79, unknown 86.7
2290 Female, age 72, unknown 82.5
1854 Male, age 80, left hemisphere 80.2
1781 Male, age 74, unknown 70.0
2289 Male, age 61, right hemisphere 56.7
Globus pallidus, externus
nTPM: 82.4
2772 Female, age 79, unknown 117.0
1996 Male, age 80, right hemisphere 99.3
2395 Male, age 75, both hemispheres 98.4
2646 Male, age 61, right hemisphere 54.0
2567 Female, age 72, unknown 43.3
Globus pallidus, internus
nTPM: 87.3
2287 Male, age 75, right hemisphere 119.3
2778 Female, age 91, both hemispheres 101.2
2483 Female, age 94, right hemisphere 101.1
2037 Male, age 80, right hemisphere 88.0
1818 Male, age 74, unknown 85.0
2111 Female, age 85, right hemisphere 71.8
2566 Female, age 72, unknown 44.9
Nucleus accumbens
nTPM: 87.6
2286 Male, age 75, left hemisphere 116.6
2391 Female, age 94, left hemisphere 108.0
1856 Female, age 91, right hemisphere 100.2
1806 Female, age 85, left hemisphere 85.8
2698 Female, age 72, unknown 83.5
2824 Male, age 61, right hemisphere 83.1
1783 Male, age 74, unknown 70.9
2732 Male, age 80, right hemisphere 52.7
Nucleus basalis of Meynert
nTPM: 68.7
2484 Female, age 94, left hemisphere 71.2
2393 Male, age 80, right hemisphere 69.4
2821 Male, age 75, both hemispheres 68.7
2569 Male, age 61, both hemispheres 65.6
Nucleus of the diagonal band
nTPM: 93.6
1812 Female, age 91, both hemispheres 112.6
2775 Male, age 80, right hemisphere 107.0
2195 Female, age 85, both hemispheres 91.9
2029 Male, age 61, right hemisphere 86.3
1979 Male, age 74, unknown 70.1
Putamen
nTPM: 74.5
2482 Female, age 94, left hemisphere 92.9
2466 Female, age 79, unknown 89.2
1937 Female, age 91, right hemisphere 84.6
1838 Male, age 80, right hemisphere 72.5
1829 Male, age 74, unknown 69.5
2647 Male, age 75, left hemisphere 62.1
2489 Female, age 72, unknown 50.8
Septal nuclei
nTPM: 78.4
2031 Female, age 72, unknown 107.8
1960 Male, age 74, unknown 94.5
2009 Female, age 91, both hemispheres 82.7
2629 Female, age 94, right hemisphere 71.0
2199 Male, age 80, right hemisphere 68.6
2394 Male, age 61, left hemisphere 64.6
2059 Female, age 85, both hemispheres 59.4
Stria terminalis, bed nucleus
nTPM: 74.5
1974 Female, age 91, both hemispheres 90.8
2486 Female, age 94, both hemispheres 72.3
2201 Male, age 74, unknown 60.5

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 195.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 177.8
Samples: 246

Max nTPM: 490.5
Min nTPM: 79.6
Std nTPM: 50.1
Median nTPM: 170.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 490.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 455.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 393.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 384.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 316.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 308.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 278.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 268.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 262.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 257.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 251.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 195.9
Samples: 246

Max nTPM: 645.7
Min nTPM: 114.7
Std nTPM: 54.2
Median nTPM: 188.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 645.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 440.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 406.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 316.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 311.5
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 305.9
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 302.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 298.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 281.7
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 279.6
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 278.6
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Brain - Putamen (basal ganglia)
Average nTPM: 193.9
Samples: 205

Max nTPM: 448.3
Min nTPM: 93.3
Std nTPM: 48.0
Median nTPM: 184.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 448.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 389.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 369.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 352.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 313.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 306.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 301.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 295.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 280.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 278.8
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 272.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 109.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 65.7
FF:10164-103B2 76 years, female 65.7
Nucleus accumbens
Scaled Tags Per Million: 96.0
FF:10037-101F1 23-56 years, mixed 96.0
Putamen
Scaled Tags Per Million: 109.2
FF:10176-103C5 60 years, female 109.2
Globus pallidus
Scaled Tags Per Million: 77.8
FF:10175-103C4 60 years, female 97.3
FF:10161-103A8 76 years, female 58.3

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 131.9
Pig sample Sample description nTPM
Caudate
nTPM: 88.8
Samples: 4

Max nTPM: 96.1
Min nTPM: 80.4
Sample A Female 85.8
Sample B Female 80.4
Sample C Male 96.1
Sample D Male 92.7
Putamen
nTPM: 131.9
Samples: 4

Max nTPM: 204.8
Min nTPM: 99.8
Sample A Female 122.5
Sample B Female 99.8
Sample C Male 204.8
Sample D Male 100.5
Septum
nTPM: 92.7
Samples: 4

Max nTPM: 108.1
Min nTPM: 78.3
Sample A Female 97.8
Sample B Female 86.4
Sample C Male 108.1
Sample D Male 78.3
Ventral pallidum
nTPM: 100.9
Samples: 4

Max nTPM: 129.4
Min nTPM: 73.1
Sample A Female 83.9
Sample B Female 117.0
Sample C Male 129.4
Sample D Male 73.1

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 86.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 74.0
Samples: 4

Max nTPM: 77.4
Min nTPM: 69.7
Sample A Male 76.8
Sample B Male 69.7
Sample C Female 77.4
Sample D Female 72.0
Septum
nTPM: 86.5
Samples: 4

Max nTPM: 107.1
Min nTPM: 74.7
Sample A Male 74.7
Sample B Male 107.1
Sample C Female 84.9
Sample D Female 79.4
Ventral forebrain
nTPM: 78.2
Samples: 4

Max nTPM: 89.4
Min nTPM: 72.4
Sample A Male 72.8
Sample B Male 72.4
Sample C Female 89.4
Sample D Female 78.0

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
2291 Antisense, RP_040604_01_A01, Mouse strain C57BL/6J (56 days, male) 0.0
2292 Antisense, RP_040604_01_A01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
2291 Antisense, RP_040604_01_A01, Mouse strain C57BL/6J (56 days, male) 0.0
2292 Antisense, RP_040604_01_A01, Mouse strain C57BL/6J (56 days, male) 0.0

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