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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SSR4 is not prognostic in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
403.7
Number of samples
349
Samples
Sample
Description
TPM
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
1493.0
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
1300.7
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
1269.6
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
1216.0
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
1150.2
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
1139.9
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
1108.1
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
1107.5
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
1056.2
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
1056.0
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
1047.5
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
1016.8
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
999.7
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
935.5
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
933.0
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
823.9
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
817.5
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
806.1
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
804.9
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
785.9
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
784.5
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
781.6
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
752.1
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
750.6
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
742.0
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
740.9
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
734.5
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
726.8
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
722.0
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
715.3
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
713.4
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
707.9
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
706.2
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
697.8
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
695.9
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
685.0
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
679.0
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
678.3
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
673.4
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
671.6
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
663.8
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
660.6
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
647.8
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
641.9
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
636.0
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
632.2
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
629.9
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
629.2
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
628.0
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
627.4
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
621.7
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
605.9
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
600.4
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
598.3
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
593.4
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
590.8
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
589.9
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
578.0
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
571.1
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
566.5
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
565.2
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
563.4
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
558.6
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
557.4
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
550.2
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
549.7
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
545.6
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
544.0
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
542.0
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
540.8
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
534.6
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
529.1
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
526.4
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
525.8
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
525.0
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
522.8
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
521.4
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
506.1
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
505.2
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
505.1
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
500.4
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
498.9
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
497.3
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
496.5
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
492.6
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
492.3
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
491.4
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
491.2
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
487.0
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
481.3
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
481.3
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
476.9
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
476.5
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
465.8
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
462.1
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
461.1
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
459.8
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
457.7
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
457.5
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
457.4
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
456.0
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
453.0
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
444.5
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
444.3
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
444.3
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
443.8
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
443.4
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
442.6
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
442.6
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
440.4
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
438.9
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
438.2
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
437.7
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
437.5
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
436.2
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
433.6
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
429.0
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
428.3
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
427.9
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
424.6
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
424.1
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
416.1
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
415.9
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
415.6
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
413.1
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
412.9
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
412.1
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
411.6
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
410.8
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
409.8
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
409.1
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
408.9
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
407.3
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
406.6
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
403.2
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
398.0
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
397.7
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
396.1
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
396.0
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
395.1
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
394.6
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
393.1
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
391.1
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
390.0
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
388.4
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
387.9
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
387.1
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
386.9
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
386.8
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
386.6
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
384.3
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
383.6
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
383.3
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
383.1
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
380.9
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
376.5
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
376.2
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
374.3
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
373.8
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
372.7
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
371.7
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
370.8
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
370.4
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
368.7
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
368.1
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
360.0
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
358.0
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
357.8
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
357.6
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
357.3
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
356.5
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
356.0
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
354.9
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
351.4
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
350.9
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
350.5
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
348.4
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
347.4
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
346.5
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
346.5
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
346.4
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
345.5
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
345.2
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
343.4
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
339.5
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
339.5
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
338.8
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
335.4
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
333.8
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
333.5
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
332.0
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
330.5
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
329.9
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
329.8
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
329.6
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
328.3
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
325.3
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
322.5
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
320.5
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
319.1
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
318.0
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
318.0
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
317.9
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
316.7
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
316.1
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
315.2
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
314.7
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
314.4
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
313.8
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
311.3
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
310.3
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
309.4
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
306.8
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
306.6
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
305.2
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
300.9
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
300.1
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
300.0
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
299.7
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
299.6
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
299.2
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
297.4
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
295.4
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
291.3
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
290.0
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
289.6
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
287.9
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
287.6
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
283.8
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
281.4
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
280.4
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
275.7
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
275.6
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
275.1
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
275.0
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
274.9
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
274.1
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
273.9
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
273.4
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
273.1
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
271.6
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
271.1
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
269.3
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
268.1
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
268.0
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
267.7
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
265.9
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
264.9
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
264.0
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
262.5
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
261.5
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
261.4
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
260.0
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
259.9
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
259.7
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
258.7
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
258.3
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
258.1
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
257.7
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
257.6
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
257.2
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
255.7
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
253.0
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
249.2
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
248.7
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
248.5
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
247.2
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
247.2
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
245.0
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
244.5
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
242.4
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
240.1
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
240.0
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
239.8
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
239.1
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
238.1
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
236.4
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
236.0
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
233.7
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
233.5
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
233.2
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
232.2
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
231.9
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
229.9
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
229.7
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
228.2
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
226.9
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
224.3
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
223.8
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
223.3
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
220.3
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
218.8
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
215.9
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
215.1
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
214.7
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
214.0
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
213.3
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
212.1
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
211.6
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
211.6
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
211.1
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
209.0
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
208.3
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
208.0
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
207.1
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
206.6
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
204.7
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
203.7
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
202.9
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
202.6
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
201.1
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
200.4
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
200.1
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
200.0
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
198.7
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
198.6
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
192.9
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
192.7
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
188.7
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
185.8
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
184.3
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
183.3
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
182.3
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
181.5
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
179.1
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
177.0
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
175.0
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
163.6
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
163.2
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
162.7
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
162.4
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
160.0
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
159.0
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
157.7
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
156.9
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
155.7
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
155.0
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
152.2
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
150.6
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
145.5
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
134.3
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
117.8
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
113.6
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
105.5
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
104.1
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
94.0
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
86.4
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
69.5
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SSR4 is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
349.8
Number of samples
81
Samples
Sample
Description
TPM
DO46586
0 years, female, NA, stage:III, dead, 1019 days
1640.1
DO46366
0 years, female, NA, stage:III, dead, 2054 days
1603.9
DO46350
0 years, female, NA, stage:III, dead, 886 days
710.5
DO46551
0 years, female, NA, stage:III, dead, 1055 days
681.9
DO46591
0 years, female, NA, stage:III, dead, 195 days
670.9
DO46546
0 years, female, NA, stage:III, dead, 1889 days
646.1
DO46611
0 years, female, NA, stage:III, dead, 734 days
625.0
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
583.8
DO46412
0 years, female, NA, stage:III, dead, 597 days
548.7
DO46372
0 years, female, NA, stage:III, dead, 1326 days
524.2
DO46453
0 years, female, NA, stage:III, dead, 3294 days
523.6
DO46432
0 years, female, NA, stage:III, alive, 2218 days
516.5
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
512.5
DO46376
0 years, female, NA, stage:III, dead, 1430 days
498.0
DO46342
0 years, female, NA, stage:III, dead, 1398 days
490.6
DO46333
0 years, female, NA, stage:III, dead, 359 days
479.1
DO46576
0 years, female, NA, stage:III, alive, 133 days
453.4
DO46329
0 years, female, NA, stage:III, dead, 1699 days
452.6
DO46581
0 years, female, NA, stage:III, dead, 408 days
444.0
DO46370
0 years, female, NA, stage:III, dead, 1727 days
413.0
DO46528
0 years, female, NA, stage:III, alive, 6139 days
412.0
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
398.7
DO46380
0 years, female, NA, stage:III, dead, 1423 days
382.2
DO46331
0 years, female, NA, stage:III, dead, 612 days
362.4
DO46374
0 years, female, NA, stage:III, dead, 1409 days
362.1
DO46386
0 years, female, NA, stage:III, dead, 1162 days
360.9
DO46364
0 years, female, NA, stage:III, dead, 806 days
350.9
DO46368
0 years, female, NA, stage:III, dead, 2879 days
350.9
DO46400
0 years, female, NA, stage:III, dead, 719 days
342.2
DO46390
0 years, female, NA, stage:III, dead, 374 days
339.5
DO46436
0 years, female, NA, stage:III, alive, 3193 days
339.1
DO46493
0 years, female, NA, stage:IV, alive, 839 days
334.6
DO46404
0 years, female, NA, stage:III, dead, 690 days
333.9
DO46568
0 years, female, NA, stage:III, dead, 320 days
331.6
DO46328
0 years, female, NA, stage:III, dead, 972 days
328.6
DO46448
0 years, female, NA, stage:III, dead, 654 days
311.8
DO46330
0 years, female, NA, stage:III, dead, 684 days
306.4
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
300.3
DO46354
0 years, female, NA, stage:III, dead, 843 days
300.0
DO46463
0 years, female, NA, stage:III, dead, 2451 days
296.2
DO46344
0 years, female, NA, stage:III, dead, 642 days
287.5
DO46468
0 years, female, NA, stage:III, alive, 2776 days
279.6
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
275.9
DO46388
0 years, female, NA, stage:III, dead, 413 days
271.4
DO46538
0 years, female, NA, stage:III, dead, 1527 days
271.2
DO46382
0 years, female, NA, stage:IV, dead, 311 days
257.0
DO46326
0 years, female, NA, stage:III, dead, 701 days
245.6
DO46508
0 years, female, NA, stage:III, dead, 2101 days
243.8
DO46602
0 years, female, NA, stage:III, dead, 205 days
239.0
DO46402
0 years, female, NA, stage:III, dead, 511 days
237.9
DO46356
0 years, female, NA, stage:III, dead, 911 days
236.3
DO46560
0 years, female, NA, stage:IV, dead, 286 days
235.4
DO46332
0 years, female, NA, stage:III, dead, 689 days
235.3
DO46533
0 years, female, NA, stage:III, alive, 3667 days
235.1
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
225.8
DO46378
0 years, female, NA, stage:III, alive, 843 days
219.9
DO46358
0 years, female, NA, stage:III, dead, 423 days
215.5
DO46384
0 years, female, NA, stage:III, dead, 614 days
215.2
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
213.8
DO46597
0 years, female, NA, stage:III, dead, 393 days
212.1
DO46340
0 years, female, NA, stage:III, dead, 616 days
209.4
DO46336
0 years, female, NA, stage:IV, dead, 664 days
208.7
DO46392
0 years, female, NA, stage:III, dead, 628 days
203.3
DO46561
0 years, female, NA, stage:III, dead, 195 days
203.1
DO46443
0 years, female, NA, stage:III, dead, 2464 days
202.5
DO46325
0 years, female, NA, stage:III, dead, 477 days
197.2
DO46346
0 years, female, NA, stage:III, dead, 1187 days
194.7
DO46571
0 years, female, NA, stage:III, dead, 243 days
181.9
DO46588
0 years, female, NA, stage:III, dead, 438 days
176.9
DO46338
0 years, female, NA, stage:III, dead, 596 days
173.1
DO46362
0 years, female, NA, stage:III, dead, 1639 days
170.6
DO46398
0 years, female, NA, stage:III, alive, 437 days
165.6
DO46606
0 years, female, NA, stage:III, alive, 804 days
164.7
DO46334
0 years, female, NA, stage:III, dead, 496 days
163.2
DO46518
0 years, female, NA, stage:III, alive, 2960 days
162.3
DO46408
0 years, female, NA, stage:III, dead, 489 days
158.6
DO46327
0 years, female, NA, stage:III, dead, 184 days
151.4
DO46352
0 years, female, NA, stage:III, dead, 677 days
136.9
DO46348
0 years, female, NA, stage:IV, dead, 287 days
135.7
DO46566
0 years, female, NA, stage:III, dead, 673 days
134.2
DO46396
0 years, female, NA, stage:III, dead, 583 days
128.0
Show allShow less
OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
0.6
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
0.3
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
0.3
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
0.1
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
0.1
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
0.1
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
0.1
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
0.0
a3a26070-fb84-406a-8280-d555e6_D2
Normal
0.0
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
0.0
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
-0.1
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
-0.1
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
-0.1
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
-0.1
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
-0.2
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
-0.2
161317f3-1a39-438e-af45-cd2502_D2
Tumor
-0.2
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
-0.3
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
-0.3
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
-0.3
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
-0.3
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
-0.4
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
-0.4
1db5574d-aca7-403c-8100-6e705f_D2
Normal
-0.4
21efd60f-6a31-4b98-9477-16a905_D2
Normal
-0.4
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
-0.4
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
-0.4
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
-0.5
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
-0.5
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
-0.5
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
-0.5
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
-0.5
285fed94-1495-448e-879b-b55de9_D2
Tumor
-0.6
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
-0.6
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
-0.6
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
-0.6
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
-0.6
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
-0.6
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
-0.6
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
-0.6
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
-0.6
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
-0.7
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
-0.7
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
-0.7
1a10c200-3895-4648-b951-94f99f_D2
Tumor
-0.7
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
-0.7
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
-0.7
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
-0.7
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
-0.7
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
-0.7
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
-0.7
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
-0.8
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
-0.8
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
-0.8
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
-0.8
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
-0.8
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
-0.8
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
-0.8
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
-0.8
e9d416e7-f661-400a-896e-388545_D2
Tumor
-0.8
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
-0.9
a65d8e76-640f-4341-a561-afbb57_D2
Normal
-0.9
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
-0.9
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
-0.9
2f901c90-617e-46da-9fac-d68369_D2
Tumor
-0.9
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
-0.9
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
-0.9
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
-0.9
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
-0.9
340a3769-3031-41ae-bb08-a2f696_D2
Normal
-0.9
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
-0.9
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
-0.9
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
-1.0
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
-1.0
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
-1.0
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
-1.0
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
-1.0
1772e913-f62e-446a-8cf3-720348_D2
Tumor
-1.0
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
-1.0
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
-1.0
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
-1.0
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
-1.1
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
-1.1
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
-1.1
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
-1.1
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
-1.2
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
-1.2
15524912-685a-47ce-a824-567848_D2
Tumor
-1.3
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
-1.3
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
-1.3
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
-1.3
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
-1.3
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
-1.3
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
-1.3
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
-1.4
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
-1.4
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
-1.4
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
-1.4
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
-1.4
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
-1.4
10c2d629-0287-4511-ac25-f29031_D2
Tumor
-1.4
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
-1.5
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
-1.6
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
-1.7
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
-1.7
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
-1.7
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
-2.0
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
-2.1
Show allShow less
OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.