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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SSR4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
385.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1375.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1331.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1251.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1192.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1126.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1126.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1082.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1017.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
996.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
995.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
979.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
962.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
929.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
922.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
912.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
855.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
832.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
807.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
805.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
805.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
793.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
761.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
750.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
729.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
728.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
727.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
720.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
720.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
713.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
711.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
702.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
691.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
691.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
688.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
685.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
685.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
678.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
672.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
660.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
657.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
643.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
641.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
638.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
635.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
628.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
620.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
620.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
611.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
611.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
609.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
608.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
597.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
596.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
594.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
591.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
591.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
590.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
581.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
578.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
575.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
574.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
573.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
571.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
566.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
560.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
558.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
554.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
551.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
545.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
539.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
531.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
527.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
526.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
518.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
515.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
512.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
511.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
510.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
508.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
507.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
499.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
499.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
495.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
487.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
486.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
484.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
481.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
477.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
476.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
475.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
473.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
471.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
468.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
468.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
465.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
465.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
462.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
461.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
459.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
456.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
454.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
447.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
445.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
444.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
441.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
441.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
439.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
434.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
434.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
430.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
425.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
425.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
424.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
422.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
417.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
416.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
412.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
412.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
411.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
410.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
410.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
408.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
408.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
405.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
404.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
400.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
400.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
399.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
399.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
397.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
393.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
393.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
392.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
391.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
391.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
390.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
389.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
388.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
384.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
383.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
382.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
379.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
377.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
377.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
377.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
376.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
374.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
371.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
370.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
370.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
370.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
368.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
367.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
365.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
364.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
364.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
364.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
359.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
359.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
357.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
356.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
355.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
352.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
351.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
350.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
350.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
349.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
346.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
345.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
343.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
336.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
335.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
335.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
335.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
333.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
331.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
331.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
331.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
330.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
330.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
325.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
324.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
319.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
319.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
318.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
318.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
318.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
317.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
316.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
315.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
314.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
312.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
310.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
308.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
307.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
306.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
306.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
305.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
305.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
304.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
301.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
301.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
301.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
300.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
299.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
297.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
297.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
296.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
294.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
294.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
293.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
292.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
292.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
291.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
291.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
289.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
288.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
286.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
285.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
279.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
277.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
276.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
274.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
273.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
273.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
273.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
272.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
272.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
271.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
271.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
271.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
270.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
270.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
269.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
269.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
268.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
267.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
267.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
267.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
265.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
265.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
265.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
264.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
263.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
263.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
263.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
263.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
260.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
259.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
257.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
257.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
257.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
257.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
257.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
257.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
256.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
254.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
254.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
253.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
252.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
251.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
251.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
250.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
249.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
247.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
247.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
247.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
244.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
243.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
241.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
239.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
238.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
236.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
233.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
232.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
231.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
231.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
231.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
231.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
230.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
230.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
230.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
229.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
229.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
229.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
228.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
228.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
227.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
224.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
223.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
222.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
217.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
217.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
217.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
214.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
213.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
211.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
211.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
211.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
207.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
205.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
204.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
202.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
199.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
198.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
197.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
196.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
196.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
195.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
195.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
194.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
194.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
194.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
191.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
189.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
185.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
184.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
183.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
182.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
180.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
180.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
177.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
175.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
174.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
174.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
172.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
168.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
168.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
168.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
167.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
165.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
163.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
160.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
159.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
159.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
158.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
157.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
156.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
156.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
155.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
155.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
153.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
148.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
147.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
147.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
143.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
141.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
138.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
135.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
130.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
126.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
123.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
122.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
116.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
115.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
112.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
112.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
110.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
106.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
105.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
102.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SSR4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
220.4
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
1418.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
803.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
756.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
721.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
712.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
707.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
654.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
619.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
579.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
547.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
543.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
539.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
526.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
464.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
463.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
424.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
408.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
408.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
403.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
402.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
402.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
397.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
389.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
380.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
372.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
371.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
370.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
368.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
359.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
347.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
337.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
332.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
329.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
327.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
321.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
320.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
311.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
310.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
307.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
304.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
293.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
293.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
291.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
289.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
284.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
282.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
281.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
281.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
277.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
274.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
270.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
268.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
267.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
266.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
265.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
265.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
261.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
261.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
259.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
258.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
251.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
249.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
249.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
246.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
243.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
241.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
240.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
235.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
235.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
234.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
233.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
230.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
229.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
228.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
228.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
227.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
226.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
225.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
224.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
223.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
222.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
221.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
219.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
217.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
215.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
214.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
213.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
212.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
207.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
202.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
202.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
201.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
200.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
200.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
200.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
198.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
197.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
197.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
196.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
193.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
193.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
192.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
192.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
190.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
188.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
188.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
187.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
185.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
185.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
185.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
183.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
181.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
180.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
180.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
179.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
178.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
178.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
176.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
174.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
172.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
171.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
171.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
171.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
171.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
170.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
169.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
168.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
168.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
167.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
165.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
163.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
163.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
162.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
161.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
161.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
159.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
157.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
157.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
157.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
154.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
154.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
153.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
151.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
149.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
149.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
149.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
149.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
147.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
147.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
147.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
146.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
145.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
145.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
144.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
144.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
144.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
144.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
143.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
143.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
141.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
141.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
141.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
140.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
138.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
138.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
137.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
137.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
136.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
134.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
133.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
132.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
130.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
130.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
129.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
128.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
128.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
127.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
126.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
123.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
121.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
121.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
120.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
120.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
119.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
119.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
119.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
118.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
118.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
117.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
117.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
116.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
115.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
114.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
112.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
108.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
108.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
108.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
107.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
107.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
107.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
106.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
105.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
104.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
104.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
102.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
101.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
100.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
99.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
99.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
97.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
97.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
94.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
92.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
89.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
89.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
88.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
88.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
85.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
81.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
80.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
78.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
76.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
75.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
74.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
74.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
67.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
67.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
65.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
55.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
52.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
52.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1025
Tumor
1.0
135
Tumor
0.8
571
Tumor
0.6
721
Tumor
0.6
497
Tumor
0.6
713
Tumor
0.6
1021
Tumor
0.6
467
Tumor
0.6
223
Tumor
0.5
983
Tumor
0.5
937
Tumor
0.5
823
Tumor
0.5
777
Tumor
0.5
545
Tumor
0.5
745
Tumor
0.5
557
Tumor
0.4
716
Normal
0.4
686
Normal
0.4
685
Tumor
0.4
743
Tumor
0.4
527
Tumor
0.4
113
Tumor
0.4
145
Tumor
0.4
314
Normal
0.4
523
Tumor
0.3
332
Normal
0.3
696
Normal
0.3
817
Tumor
0.3
443
Tumor
0.3
728
Normal
0.3
756
Normal
0.3
724
Normal
0.3
327
Tumor
0.3
515
Tumor
0.3
217
Tumor
0.3
923
Tumor
0.3
786
Normal
0.3
494
Normal
0.3
112
Tumor
0.3
331
Tumor
0.3
926
Normal
0.3
395
Tumor
0.3
785
Tumor
0.3
131
Tumor
0.3
221
Tumor
0.3
553
Tumor
0.3
171
Tumor
0.3
191
Tumor
0.3
912
Normal
0.3
955
Tumor
0.3
142
Normal
0.2
481
Tumor
0.2
312
Normal
0.2
277
Tumor
0.2
813
Tumor
0.2
1032
Normal
0.2
978
Normal
0.2
451
Tumor
0.2
1043
Tumor
0.2
285
Tumor
0.2
558
Normal
0.2
111
Normal
0.2
647
Tumor
0.2
851
Tumor
0.2
1026
Normal
0.2
636
Normal
0.2
452
Normal
0.2
723
Tumor
0.2
671
Tumor
0.2
343
Tumor
0.2
186
Normal
0.2
663
Tumor
0.2
925
Tumor
0.2
1042
Normal
0.2
462
Normal
0.2
665
Tumor
0.2
864
Normal
0.2
126
Normal
0.2
383
Tumor
0.2
524
Normal
0.2
857
Tumor
0.2
944
Normal
0.2
212
Normal
0.2
938
Normal
0.2
554
Normal
0.2
778
Normal
0.2
286
Normal
0.2
425
Tumor
0.2
128
Normal
0.2
572
Normal
0.2
514
Normal
0.2
951
Tumor
0.2
187
Tumor
0.2
617
Tumor
0.2
1014
Normal
0.2
824
Normal
0.2
697
Tumor
0.2
363
Tumor
0.2
466
Normal
0.2
865
Tumor
0.2
746
Normal
0.2
278
Normal
0.2
478
Normal
0.2
528
Normal
0.2
965
Tumor
0.2
1022
Normal
0.2
1046
Normal
0.2
958
Normal
0.1
714
Normal
0.1
921
Tumor
0.1
1015
Tumor
0.1
863
Tumor
0.1
353
Tumor
0.1
534
Normal
0.1
737
Tumor
0.1
1044
Normal
0.1
1041
Tumor
0.1
968
Normal
0.1
568
Normal
0.1
136
Normal
0.1
877
Tumor
0.1
284
Normal
0.1
924
Normal
0.1
526
Normal
0.1
536
Normal
0.1
546
Normal
0.1
448
Normal
0.1
114
Normal
0.1
868
Normal
0.1
472
Normal
0.1
1028
Normal
0.1
385
Tumor
0.1
535
Tumor
0.1
661
Tumor
0.1
517
Tumor
0.1
922
Normal
0.1
431
Tumor
0.1
484
Normal
0.1
852
Normal
0.1
195
Tumor
0.1
964
Normal
0.1
518
Normal
0.1
392
Normal
0.1
966
Normal
0.1
474
Normal
0.1
814
Normal
0.1
815
Tumor
0.1
172
Normal
0.1
918
Normal
0.1
488
Normal
0.1
954
Normal
0.1
464
Normal
0.1
436
Normal
0.1
715
Tumor
0.1
355
Tumor
0.1
367
Tumor
0.1
1027
Tumor
0.1
214
Normal
0.1
492
Normal
0.1
432
Normal
0.1
984
Normal
0.1
1031
Tumor
0.1
913
Tumor
0.1
358
Normal
0.1
421
Tumor
0.1
414
Normal
0.1
816
Normal
0.1
695
Tumor
0.1
884
Normal
0.1
1016
Normal
0.1
455
Tumor
0.1
664
Normal
0.1
482
Normal
0.1
858
Normal
0.1
213
Tumor
0.1
232
Normal
0.1
873
Tumor
0.1
218
Normal
0.1
141
Tumor
0.1
862
Normal
0.1
722
Normal
0.1
393
Tumor
0.1
188
Normal
0.1
461
Tumor
0.1
412
Normal
0.1
573
Tumor
0.1
356
Normal
0.1
564
Normal
0.0
916
Normal
0.0
648
Normal
0.0
222
Normal
0.0
952
Normal
0.0
977
Tumor
0.0
386
Normal
0.0
227
Tumor
0.0
376
Normal
0.0
956
Normal
0.0
387
Tumor
0.0
228
Normal
0.0
727
Tumor
0.0
262
Normal
0.0
127
Tumor
0.0
124
Normal
0.0
272
Normal
0.0
574
Normal
0.0
394
Normal
0.0
138
Normal
0.0
258
Normal
0.0
328
Normal
0.0
434
Normal
0.0
433
Tumor
0.0
447
Tumor
0.0
298
Normal
0.0
388
Normal
0.0
866
Normal
0.0
125
Tumor
0.0
148
Normal
0.0
666
Normal
0.0
738
Normal
0.0
742
Normal
0.0
426
Normal
0.0
567
Tumor
0.0
446
Normal
0.0
161
Tumor
0.0
628
Normal
0.0
468
Normal
0.0
473
Tumor
0.0
516
Normal
0.0
883
Tumor
0.0
162
Normal
0.0
224
Normal
0.0
635
Tumor
0.0
662
Normal
0.0
416
Normal
0.0
357
Tumor
0.0
982
Normal
0.0
147
Tumor
0.0
818
Normal
0.0
396
Normal
0.0
975
Tumor
0.0
498
Normal
0.0
137
Tumor
0.0
422
Normal
0.0
914
Normal
0.0
352
Normal
0.0
525
Tumor
0.0
698
Normal
0.0
146
Normal
0.0
483
Tumor
0.0
185
Tumor
0.0
874
Normal
0.0
368
Normal
0.0
981
Tumor
0.0
384
Normal
0.0
861
Tumor
-0.1
196
Normal
-0.1
444
Normal
-0.1
313
Tumor
-0.1
424
Normal
-0.1
882
Normal
-0.1
618
Normal
-0.1
563
Tumor
-0.1
465
Tumor
-0.1
211
Tumor
-0.1
364
Normal
-0.1
967
Tumor
-0.1
192
Normal
-0.1
642
Normal
-0.1
953
Tumor
-0.1
878
Normal
-0.1
413
Tumor
-0.1
271
Tumor
-0.1
672
Normal
-0.1
362
Normal
-0.1
963
Tumor
-0.1
943
Tumor
-0.1
755
Tumor
-0.1
976
Normal
-0.1
428
Normal
-0.1
456
Normal
-0.1
463
Tumor
-0.1
957
Tumor
-0.1
427
Tumor
-0.1
477
Tumor
-0.1
132
Normal
-0.1
487
Tumor
-0.1
231
Tumor
-0.1
366
Normal
-0.1
268
Normal
-0.1
351
Tumor
-0.1
616
Normal
-0.1
493
Tumor
-0.1
491
Tumor
-0.1
615
Tumor
-0.1
917
Tumor
-0.1
1045
Tumor
-0.1
537
Tumor
-0.1
445
Tumor
-0.1
341
Tumor
-0.1
471
Tumor
-0.1
354
Normal
-0.2
423
Tumor
-0.2
415
Tumor
-0.2
411
Tumor
-0.2
342
Normal
-0.2
538
Normal
-0.2
533
Tumor
-0.2
257
Tumor
-0.2
344
Normal
-0.2
261
Tumor
-0.2
267
Tumor
-0.2
915
Tumor
-0.2
513
Tumor
-0.2
881
Tumor
-0.2
123
Tumor
-0.2
283
Tumor
-0.2
365
Tumor
-0.3
391
Tumor
-0.3
361
Tumor
-0.3
297
Tumor
-0.3
641
Tumor
-0.3
627
Tumor
-0.3
375
Tumor
-0.3
744
Normal
-0.3
311
Tumor
-0.3
867
Tumor
-0.3
435
Tumor
-0.4
1013
Tumor
-0.5
911
Tumor
-0.6
741
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.