We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GRINA is not prognostic in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
307.3
Number of samples
349
Samples
Sample
Description
TPM
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
971.8
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
820.5
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
750.2
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
749.2
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
742.8
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
728.4
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
724.6
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
702.2
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
685.0
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
665.5
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
651.3
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
650.3
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
630.6
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
629.8
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
629.2
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
604.1
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
602.2
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
599.8
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
596.0
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
595.7
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
582.7
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
580.1
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
572.7
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
570.4
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
565.4
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
565.1
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
557.5
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
556.0
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
553.8
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
549.5
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
542.9
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
536.5
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
536.1
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
529.7
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
521.8
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
520.2
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
520.1
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
518.0
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
511.5
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
508.0
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
507.9
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
506.3
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
504.7
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
500.3
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
489.3
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
488.6
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
487.8
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
487.6
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
479.4
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
474.2
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
472.7
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
471.3
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
465.8
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
464.6
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
463.5
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
462.3
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
454.2
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
453.0
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
446.2
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
445.9
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
444.3
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
443.5
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
442.4
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
441.9
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
437.1
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
435.4
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
430.1
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
429.5
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
426.8
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
426.7
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
425.7
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
425.5
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
422.8
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
412.8
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
412.1
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
412.1
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
410.2
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
408.2
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
405.6
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
403.7
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
403.6
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
402.7
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
399.8
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
399.4
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
398.3
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
397.3
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
396.6
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
396.5
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
394.4
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
393.5
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
392.5
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
388.8
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
387.2
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
385.6
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
384.4
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
383.7
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
383.3
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
381.7
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
378.2
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
375.5
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
374.7
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
372.5
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
371.6
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
369.5
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
368.7
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
367.7
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
367.2
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
365.7
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
363.7
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
362.6
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
362.2
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
362.2
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
359.2
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
356.1
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
354.3
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
353.7
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
349.8
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
348.2
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
345.8
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
345.5
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
345.1
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
342.8
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
342.7
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
340.1
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
338.8
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
337.4
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
335.9
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
335.2
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
333.7
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
330.2
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
329.6
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
329.3
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
327.5
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
325.6
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
325.3
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
323.3
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
322.3
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
320.6
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
319.0
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
311.9
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
311.3
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
306.4
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
305.4
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
303.7
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
303.3
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
299.6
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
299.2
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
299.2
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
296.9
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
293.2
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
292.7
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
291.5
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
291.4
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
289.9
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
288.8
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
288.6
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
286.5
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
285.9
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
285.6
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
283.4
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
283.3
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
283.3
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
282.3
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
281.8
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
281.4
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
281.1
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
279.7
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
279.6
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
279.4
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
275.8
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
272.8
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
271.2
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
271.0
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
271.0
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
269.4
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
269.4
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
267.8
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
267.4
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
266.5
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
265.4
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
265.2
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
264.8
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
261.2
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
260.8
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
260.0
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
260.0
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
258.3
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
255.7
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
255.5
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
255.5
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
255.2
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
255.0
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
254.9
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
254.3
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
254.0
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
250.9
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
250.8
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
249.6
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
247.6
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
246.7
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
246.0
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
243.0
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
242.9
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
242.3
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
240.3
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
240.0
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
239.8
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
239.8
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
237.6
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
237.6
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
236.8
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
235.5
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
234.3
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
233.9
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
233.7
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
233.2
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
232.6
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
231.5
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
230.7
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
230.5
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
229.7
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
228.6
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
228.5
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
228.4
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
228.2
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
227.7
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
227.0
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
226.9
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
226.8
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
226.8
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
226.6
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
225.9
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
225.6
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
225.2
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
225.2
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
225.1
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
224.0
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
221.0
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
220.7
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
217.0
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
216.5
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
216.4
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
216.2
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
216.0
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
214.2
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
214.0
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
213.2
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
212.3
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
212.1
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
211.2
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
209.5
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
206.7
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
204.6
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
204.3
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
203.6
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
202.8
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
200.9
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
200.9
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
200.3
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
199.3
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
198.9
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
197.4
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
196.2
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
195.7
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
194.4
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
190.8
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
188.8
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
188.4
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
188.3
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
187.5
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
186.2
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
186.1
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
185.2
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
184.7
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
184.3
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
184.2
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
183.7
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
181.7
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
181.1
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
180.0
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
180.0
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
179.5
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
177.9
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
177.9
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
176.9
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
176.4
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
175.8
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
174.3
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
172.9
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
171.3
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
169.6
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
166.7
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
164.9
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
164.5
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
164.5
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
163.6
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
163.1
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
161.0
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
160.3
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
160.0
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
159.9
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
158.6
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
156.3
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
152.0
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
151.6
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
151.3
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
151.3
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
149.1
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
148.2
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
146.6
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
146.1
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
143.9
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
143.4
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
142.2
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
138.8
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
138.3
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
136.7
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
135.4
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
128.5
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
127.0
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
125.7
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
125.5
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
125.4
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
120.9
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
120.8
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
117.3
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
116.4
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
115.9
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
110.8
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
109.3
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
109.1
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
108.4
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
106.8
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
105.7
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
105.0
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
104.2
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
103.5
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
98.6
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
96.7
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
94.2
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
93.0
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
86.7
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
86.6
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
83.1
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
83.0
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
82.0
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
78.6
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
58.1
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GRINA is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
179.2
Number of samples
81
Samples
Sample
Description
TPM
DO46546
0 years, female, NA, stage:III, dead, 1889 days
502.2
DO46344
0 years, female, NA, stage:III, dead, 642 days
482.0
DO46493
0 years, female, NA, stage:IV, alive, 839 days
446.4
DO46551
0 years, female, NA, stage:III, dead, 1055 days
398.6
DO46376
0 years, female, NA, stage:III, dead, 1430 days
347.5
DO46606
0 years, female, NA, stage:III, alive, 804 days
347.4
DO46329
0 years, female, NA, stage:III, dead, 1699 days
335.7
DO46380
0 years, female, NA, stage:III, dead, 1423 days
327.1
DO46518
0 years, female, NA, stage:III, alive, 2960 days
322.9
DO46453
0 years, female, NA, stage:III, dead, 3294 days
315.7
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
311.3
DO46354
0 years, female, NA, stage:III, dead, 843 days
297.3
DO46372
0 years, female, NA, stage:III, dead, 1326 days
290.9
DO46528
0 years, female, NA, stage:III, alive, 6139 days
276.9
DO46392
0 years, female, NA, stage:III, dead, 628 days
265.8
DO46340
0 years, female, NA, stage:III, dead, 616 days
255.1
DO46404
0 years, female, NA, stage:III, dead, 690 days
251.6
DO46448
0 years, female, NA, stage:III, dead, 654 days
232.3
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
227.7
DO46366
0 years, female, NA, stage:III, dead, 2054 days
222.9
DO46443
0 years, female, NA, stage:III, dead, 2464 days
218.0
DO46576
0 years, female, NA, stage:III, alive, 133 days
209.0
DO46566
0 years, female, NA, stage:III, dead, 673 days
201.6
DO46364
0 years, female, NA, stage:III, dead, 806 days
201.3
DO46388
0 years, female, NA, stage:III, dead, 413 days
198.9
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
194.1
DO46568
0 years, female, NA, stage:III, dead, 320 days
190.1
DO46463
0 years, female, NA, stage:III, dead, 2451 days
186.5
DO46348
0 years, female, NA, stage:IV, dead, 287 days
182.9
DO46560
0 years, female, NA, stage:IV, dead, 286 days
177.1
DO46325
0 years, female, NA, stage:III, dead, 477 days
175.2
DO46362
0 years, female, NA, stage:III, dead, 1639 days
172.8
DO46586
0 years, female, NA, stage:III, dead, 1019 days
169.7
DO46386
0 years, female, NA, stage:III, dead, 1162 days
167.7
DO46591
0 years, female, NA, stage:III, dead, 195 days
164.7
DO46402
0 years, female, NA, stage:III, dead, 511 days
164.1
DO46368
0 years, female, NA, stage:III, dead, 2879 days
160.9
DO46400
0 years, female, NA, stage:III, dead, 719 days
160.9
DO46611
0 years, female, NA, stage:III, dead, 734 days
157.8
DO46508
0 years, female, NA, stage:III, dead, 2101 days
157.4
DO46346
0 years, female, NA, stage:III, dead, 1187 days
157.2
DO46358
0 years, female, NA, stage:III, dead, 423 days
156.6
DO46597
0 years, female, NA, stage:III, dead, 393 days
155.1
DO46330
0 years, female, NA, stage:III, dead, 684 days
154.5
DO46352
0 years, female, NA, stage:III, dead, 677 days
149.0
DO46398
0 years, female, NA, stage:III, alive, 437 days
147.7
DO46390
0 years, female, NA, stage:III, dead, 374 days
147.7
DO46327
0 years, female, NA, stage:III, dead, 184 days
145.2
DO46374
0 years, female, NA, stage:III, dead, 1409 days
141.8
DO46332
0 years, female, NA, stage:III, dead, 689 days
134.9
DO46436
0 years, female, NA, stage:III, alive, 3193 days
134.6
DO46396
0 years, female, NA, stage:III, dead, 583 days
132.8
DO46370
0 years, female, NA, stage:III, dead, 1727 days
128.8
DO46581
0 years, female, NA, stage:III, dead, 408 days
127.3
DO46571
0 years, female, NA, stage:III, dead, 243 days
126.4
DO46468
0 years, female, NA, stage:III, alive, 2776 days
126.2
DO46334
0 years, female, NA, stage:III, dead, 496 days
123.8
DO46538
0 years, female, NA, stage:III, dead, 1527 days
120.6
DO46432
0 years, female, NA, stage:III, alive, 2218 days
118.4
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
118.4
DO46561
0 years, female, NA, stage:III, dead, 195 days
117.9
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
117.7
DO46336
0 years, female, NA, stage:IV, dead, 664 days
114.1
DO46378
0 years, female, NA, stage:III, alive, 843 days
111.3
DO46328
0 years, female, NA, stage:III, dead, 972 days
98.9
DO46412
0 years, female, NA, stage:III, dead, 597 days
96.5
DO46384
0 years, female, NA, stage:III, dead, 614 days
95.1
DO46356
0 years, female, NA, stage:III, dead, 911 days
88.6
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
86.0
DO46408
0 years, female, NA, stage:III, dead, 489 days
79.6
DO46326
0 years, female, NA, stage:III, dead, 701 days
78.2
DO46342
0 years, female, NA, stage:III, dead, 1398 days
77.2
DO46533
0 years, female, NA, stage:III, alive, 3667 days
75.9
DO46602
0 years, female, NA, stage:III, dead, 205 days
75.5
DO46382
0 years, female, NA, stage:IV, dead, 311 days
74.6
DO46350
0 years, female, NA, stage:III, dead, 886 days
69.9
DO46331
0 years, female, NA, stage:III, dead, 612 days
58.9
DO46338
0 years, female, NA, stage:III, dead, 596 days
58.0
DO46333
0 years, female, NA, stage:III, dead, 359 days
53.0
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
40.5
DO46588
0 years, female, NA, stage:III, dead, 438 days
38.2
Show allShow less
OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
N/A
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
N/A
21efd60f-6a31-4b98-9477-16a905_D2
Normal
N/A
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
N/A
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
N/A
285fed94-1495-448e-879b-b55de9_D2
Tumor
N/A
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
N/A
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
N/A
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
N/A
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
N/A
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
N/A
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
N/A
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
N/A
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
N/A
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
N/A
2f901c90-617e-46da-9fac-d68369_D2
Tumor
N/A
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
N/A
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
N/A
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
N/A
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
N/A
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
N/A
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
N/A
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
N/A
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
N/A
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
N/A
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
N/A
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
N/A
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
N/A
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
N/A
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
N/A
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
N/A
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
N/A
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
N/A
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
N/A
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
N/A
1772e913-f62e-446a-8cf3-720348_D2
Tumor
N/A
e9d416e7-f661-400a-896e-388545_D2
Tumor
N/A
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
N/A
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
N/A
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
N/A
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
N/A
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
N/A
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
N/A
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
N/A
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
N/A
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
N/A
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
N/A
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
N/A
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
N/A
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
N/A
10c2d629-0287-4511-ac25-f29031_D2
Tumor
N/A
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
N/A
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
N/A
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
N/A
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
N/A
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
N/A
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
N/A
340a3769-3031-41ae-bb08-a2f696_D2
Normal
N/A
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
N/A
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
N/A
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
N/A
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
N/A
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
N/A
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
N/A
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
N/A
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
N/A
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
N/A
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
N/A
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
N/A
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
N/A
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
N/A
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
N/A
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
N/A
15524912-685a-47ce-a824-567848_D2
Tumor
N/A
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
N/A
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
N/A
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
N/A
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
N/A
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
N/A
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
N/A
a3a26070-fb84-406a-8280-d555e6_D2
Normal
N/A
161317f3-1a39-438e-af45-cd2502_D2
Tumor
N/A
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
N/A
1db5574d-aca7-403c-8100-6e705f_D2
Normal
N/A
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
N/A
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
N/A
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
N/A
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
N/A
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
N/A
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
N/A
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
N/A
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
N/A
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
N/A
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
N/A
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
N/A
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
N/A
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
N/A
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
N/A
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
N/A
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
N/A
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
N/A
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
N/A
a65d8e76-640f-4341-a561-afbb57_D2
Normal
N/A
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
N/A
1a10c200-3895-4648-b951-94f99f_D2
Tumor
N/A
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
N/A
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
N/A
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
N/A
Show allShow less
OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
