MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.7 nTPM
HPA Brain:339.1 nTPM
GTEx:57.7 nTPM
FANTOM5:31.3 Scaled Tags Per Million
Pig:111.6 nTPM
Mouse:41.9 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 339.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 283.0
2828 Female, age 72, unknown 377.5
1827 Male, age 72, unknown 324.7
2666 Male, age 74, left hemisphere 315.7
2219 Male, age 76, both hemispheres 307.0
2586 Male, age 75, left hemisphere 273.5
2019 Male, age 18, unknown 264.2
1870 Female, age 42, unknown 248.7
1833 Male, age 53, unknown 244.9
1830 Male, age 51, unknown 240.0
2411 Female, age 72, unknown 234.3
Dorsal raphe nucleus
nTPM: 275.6
2016 Female, age 72, unknown 321.9
2298 Female, age 72, unknown 285.0
1828 Male, age 53, unknown 279.8
2047 Male, age 72, unknown 275.4
2750 Male, age 76, both hemispheres 215.9
Inferior colliculus
nTPM: 280.4
2849 Male, age 72, unknown 296.0
2097 Female, age 72, unknown 289.5
1890 Male, age 53, unknown 282.9
1848 Female, age 42, unknown 253.2
Median raphe nucleus
nTPM: 266.6
2220 Male, age 76, midline 266.6
Periaquaductal grey, anterior
nTPM: 322.4
1795 Male, age 51, unknown 329.4
2502 Female, age 75, unknown 329.4
1947 Male, age 18, unknown 308.4
Periaquaductal grey, dorsal
nTPM: 318.2
2850 Male, age 76, both hemispheres 350.3
1831 Male, age 72, unknown 321.2
1840 Male, age 53, unknown 319.2
2464 Female, age 72, unknown 282.1
Periaquaductal grey, lateral
nTPM: 329.9
2140 Male, age 76, both hemispheres 378.3
2053 Male, age 18, unknown 329.2
2272 Male, age 74, both hemispheres 282.2
Pretectal area
nTPM: 339.1
1944 Female, age 72, unknown 423.3
1816 Male, age 51, unknown 423.0
2273 Male, age 74, both hemispheres 358.0
2667 Female, age 75, unknown 345.5
1817 Female, age 42, unknown 328.6
2224 Female, age 72, unknown 318.0
1815 Male, age 53, unknown 317.8
2407 Male, age 75, both hemispheres 317.5
2007 Male, age 72, unknown 316.3
2316 Male, age 76, right hemisphere 303.0
2825 Male, age 18, unknown 279.5
Red nucleus
nTPM: 240.7
2725 Female, age 75, unknown 291.2
2785 Male, age 18, unknown 272.8
2503 Female, age 72, unknown 261.6
2588 Male, age 74, left hemisphere 258.3
2584 Male, age 75, left hemisphere 255.9
1865 Male, age 51, unknown 239.1
2227 Male, age 72, unknown 226.0
2769 Male, age 72, unknown 222.9
1954 Female, age 42, unknown 220.1
1904 Male, age 53, unknown 219.8
2823 Male, age 76, right hemisphere 219.7
1821 Female, age 72, unknown 200.5
Substantia nigra
nTPM: 296.6
1941 Male, age 53, unknown 337.2
1916 Female, age 42, unknown 322.4
2409 Female, age 72, unknown 306.5
2583 Male, age 75, right hemisphere 303.9
1889 Female, age 72, unknown 297.6
1851 Male, age 51, unknown 291.4
2590 Female, age 75, unknown 287.1
2241 Male, age 72, unknown 281.4
2699 Male, age 18, unknown 271.7
2665 Male, age 74, both hemispheres 266.9
Superior colliculus
nTPM: 309.0
2087 Female, age 72, unknown 392.2
2261 Male, age 18, unknown 384.6
1796 Male, age 53, unknown 338.6
2664 Male, age 75, both hemispheres 334.0
1913 Female, age 42, unknown 333.6
1995 Male, age 72, unknown 308.6
2587 Male, age 74, left hemisphere 276.4
1839 Male, age 51, unknown 265.7
2668 Female, age 75, unknown 245.1
1895 Male, age 76, right hemisphere 211.6
Ventral tegmental area
nTPM: 274.1
1915 Female, age 42, unknown 290.3
1942 Male, age 51, unknown 288.6
2021 Male, age 53, unknown 272.8
2223 Female, age 72, unknown 269.1
2218 Male, age 76, both hemispheres 267.4
2410 Female, age 72, unknown 256.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 57.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.7
Samples: 139

Max nTPM: 107.7
Min nTPM: 27.9
Std nTPM: 13.6
Median nTPM: 55.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 107.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 101.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 92.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 88.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 88.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 86.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 86.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 82.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 82.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 80.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 79.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.3
FF:10158-103A5 76 years, female 31.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 111.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 96.0
Samples: 4

Max nTPM: 113.4
Min nTPM: 76.2
Sample A Female 93.5
Sample B Female 76.2
Sample C Male 101.0
Sample D Male 113.4
Midbrain
nTPM: 111.6
Samples: 4

Max nTPM: 129.6
Min nTPM: 90.1
Sample A Female 125.0
Sample B Female 90.1
Sample C Male 129.6
Sample D Male 101.8
Periaqueductal gray
nTPM: 88.2
Samples: 3

Max nTPM: 94.4
Min nTPM: 81.7
Sample B Female 94.4
Sample C Male 88.5
Sample D Male 81.7
Superior colliculi
nTPM: 102.6
Samples: 4

Max nTPM: 119.5
Min nTPM: 90.0
Sample A Female 90.0
Sample B Female 90.6
Sample C Male 119.5
Sample D Male 110.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 41.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.9
Samples: 4

Max nTPM: 43.8
Min nTPM: 37.5
Sample A Male 37.5
Sample B Male 43.2
Sample C Female 43.8
Sample D Female 43.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
1994 Antisense, RP_Baylor_103380, Mouse strain C57BL/6J (56 days, male) 4.2
1995 Antisense, RP_Baylor_103380, Mouse strain C57BL/6J (56 days, male) 2.3
69012795 Antisense, RP_050309_01_E04, Mouse strain C57BL/6J (56 days, male) 2.1

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