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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOMM20 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
68.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
305.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
226.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
220.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
189.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
188.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
181.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
159.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
152.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
151.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
151.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
147.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
143.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
140.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
140.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
139.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
139.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
137.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
135.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
132.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
132.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
131.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
131.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
131.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
131.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
130.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
126.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
126.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
125.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
125.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
124.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
124.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
122.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
119.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
119.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
118.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
117.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
116.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
112.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
112.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
112.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
112.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
111.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
110.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
108.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
107.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
106.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
106.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
105.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
103.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
103.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
103.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
103.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
102.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
102.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
101.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
100.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
100.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
99.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
99.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
98.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
98.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
97.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
96.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
96.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
96.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
95.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
95.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
95.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
94.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
94.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
94.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
94.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
93.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
93.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
93.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
92.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
92.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
90.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
90.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
89.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
89.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
87.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
87.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
87.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
87.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
86.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
86.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
85.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
85.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
85.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
85.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
85.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
84.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
84.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
84.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
84.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
82.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
82.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
82.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
81.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
81.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
81.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
80.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
80.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
80.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
79.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
79.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
79.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
79.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
78.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
78.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
78.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
77.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
77.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
77.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
77.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
77.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
76.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
75.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
75.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
75.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
75.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
74.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
74.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
74.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
74.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
73.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
73.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
73.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
73.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
72.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
72.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
72.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
72.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
72.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
72.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
72.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
71.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
71.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
71.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
70.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
70.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
70.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
70.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
70.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
69.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
69.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
68.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
68.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
68.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
68.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
67.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
67.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
67.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
67.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
67.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
67.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
67.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
67.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
66.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
66.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
66.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
66.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
66.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
66.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
65.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
65.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
64.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
64.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
63.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
63.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
63.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
63.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
62.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
61.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
61.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
61.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
60.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
60.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
60.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
59.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
59.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
59.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
59.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
59.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
59.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
59.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
59.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
59.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
58.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
58.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
58.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
58.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
58.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
58.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
57.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
57.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
57.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
57.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
57.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
57.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
57.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
56.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
56.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
56.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
56.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
56.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
56.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
56.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
56.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
55.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
55.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
54.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
54.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
54.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
53.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
53.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
53.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
53.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
52.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
52.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
52.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
52.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
50.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
50.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
50.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
50.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
50.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
50.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
49.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
49.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
49.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
49.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
49.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
49.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
49.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
49.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
49.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
49.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
48.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
48.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
48.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
48.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
48.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
48.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
48.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
47.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
47.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
47.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
46.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
46.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
46.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
46.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
46.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
45.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
45.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
45.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
45.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
44.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
44.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
44.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
44.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
44.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
43.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
43.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
43.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
43.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
43.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
43.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
42.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
42.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
42.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
42.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
42.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
42.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
41.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
41.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
41.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
41.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
41.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
41.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
40.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
40.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
40.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
40.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
40.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
39.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
39.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
39.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
39.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
39.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
39.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
39.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
39.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
39.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
38.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
38.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
38.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
37.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
37.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
37.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
37.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
36.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
36.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
36.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
36.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
35.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
35.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
34.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
34.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
34.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
33.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
33.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
33.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
33.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
32.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
32.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
32.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
32.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
31.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
31.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
30.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
30.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
30.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
29.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
29.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
28.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
27.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
26.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
25.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
25.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
23.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOMM20 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
60.6
Number of samples
231
Samples
Sample
Description
TPM
DO45163
0 years, male, NA, stage:2, alive, 960 days
170.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
169.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
147.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
135.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
130.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
130.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
124.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
124.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
123.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
121.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
116.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
116.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
115.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
115.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
113.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
112.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
110.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
108.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
107.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
107.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
106.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
104.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
104.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
104.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
103.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
102.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
101.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
100.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
99.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
99.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
99.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
96.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
95.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
95.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
95.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
93.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
93.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
93.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
88.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
88.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
87.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
86.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
86.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
85.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
85.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
82.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
82.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
81.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
81.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
81.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
80.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
79.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
79.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
78.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
77.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
77.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
77.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
77.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
77.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
76.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
76.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
76.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
75.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
74.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
74.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
74.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
73.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
73.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
73.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
72.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
72.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
71.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
71.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
71.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
70.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
69.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
68.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
68.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
68.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
67.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
66.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
66.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
65.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
65.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
64.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
64.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
64.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
64.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
64.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
63.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
63.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
62.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
62.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
61.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
61.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
61.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
60.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
60.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
60.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
59.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
59.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
59.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
58.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
58.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
57.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
56.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
56.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
56.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
55.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
55.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
55.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
55.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
55.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
55.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
54.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
54.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
54.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
53.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
53.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
53.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
53.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
53.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
53.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
52.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
52.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
52.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
51.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
51.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
51.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
51.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
50.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
50.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
50.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
50.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
49.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
49.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
49.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
49.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
49.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
48.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
48.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
48.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
47.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
47.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
47.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
46.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
46.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
46.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
45.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
45.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
45.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
45.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
45.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
44.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
44.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
44.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
43.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
43.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
43.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
42.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
40.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
40.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
40.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
40.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
40.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
40.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
39.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
38.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
38.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
37.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
37.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
37.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
36.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
36.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
36.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
36.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
35.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
35.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
35.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
33.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
32.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
32.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
32.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
32.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
32.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
31.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
31.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
30.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
30.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
28.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
28.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
26.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
26.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
26.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
22.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
571
Tumor
1.1
231
Tumor
1.0
473
Tumor
1.0
745
Tumor
0.9
743
Tumor
0.8
671
Tumor
0.8
627
Tumor
0.8
567
Tumor
0.8
573
Tumor
0.7
665
Tumor
0.7
635
Tumor
0.7
127
Tumor
0.7
465
Tumor
0.7
477
Tumor
0.6
483
Tumor
0.6
967
Tumor
0.6
911
Tumor
0.5
463
Tumor
0.5
257
Tumor
0.5
361
Tumor
0.5
351
Tumor
0.5
112
Tumor
0.5
451
Tumor
0.5
331
Tumor
0.5
341
Tumor
0.5
672
Normal
0.5
517
Tumor
0.5
925
Tumor
0.5
865
Tumor
0.5
135
Tumor
0.4
785
Tumor
0.4
615
Tumor
0.4
421
Tumor
0.4
267
Tumor
0.4
981
Tumor
0.4
557
Tumor
0.4
171
Tumor
0.4
727
Tumor
0.4
425
Tumor
0.4
464
Normal
0.4
663
Tumor
0.4
664
Normal
0.3
393
Tumor
0.3
123
Tumor
0.3
411
Tumor
0.3
297
Tumor
0.3
227
Tumor
0.3
435
Tumor
0.3
468
Normal
0.3
328
Normal
0.3
867
Tumor
0.3
873
Tumor
0.3
391
Tumor
0.3
1043
Tumor
0.3
452
Normal
0.3
365
Tumor
0.3
1015
Tumor
0.3
313
Tumor
0.3
271
Tumor
0.3
145
Tumor
0.3
697
Tumor
0.3
367
Tumor
0.3
1045
Tumor
0.2
513
Tumor
0.2
466
Normal
0.2
147
Tumor
0.2
467
Tumor
0.2
456
Normal
0.2
383
Tumor
0.2
427
Tumor
0.2
471
Tumor
0.2
277
Tumor
0.2
285
Tumor
0.2
695
Tumor
0.2
455
Tumor
0.2
113
Tumor
0.2
863
Tumor
0.2
484
Normal
0.2
648
Normal
0.2
131
Tumor
0.2
1027
Tumor
0.2
737
Tumor
0.2
724
Normal
0.2
414
Normal
0.2
563
Tumor
0.2
481
Tumor
0.2
137
Tumor
0.2
983
Tumor
0.2
428
Normal
0.2
387
Tumor
0.1
426
Normal
0.1
357
Tumor
0.1
641
Tumor
0.1
445
Tumor
0.1
422
Normal
0.1
977
Tumor
0.1
741
Tumor
0.1
883
Tumor
0.1
443
Tumor
0.1
861
Tumor
0.1
921
Tumor
0.1
685
Tumor
0.1
1013
Tumor
0.1
272
Normal
0.1
574
Normal
0.1
713
Tumor
0.1
423
Tumor
0.1
424
Normal
0.1
666
Normal
0.1
756
Normal
0.1
915
Tumor
0.0
497
Tumor
0.0
823
Tumor
0.0
213
Tumor
0.0
364
Normal
0.0
433
Tumor
0.0
191
Tumor
0.0
431
Tumor
0.0
353
Tumor
0.0
136
Normal
0.0
221
Tumor
0.0
558
Normal
0.0
877
Tumor
0.0
132
Normal
0.0
461
Tumor
0.0
258
Normal
0.0
647
Tumor
0.0
755
Tumor
0.0
356
Normal
0.0
332
Normal
0.0
714
Normal
0.0
487
Tumor
0.0
777
Tumor
0.0
662
Normal
0.0
187
Tumor
0.0
413
Tumor
0.0
141
Tumor
0.0
491
Tumor
0.0
912
Normal
0.0
363
Tumor
0.0
913
Tumor
0.0
661
Tumor
0.0
786
Normal
0.0
1021
Tumor
0.0
314
Normal
0.0
446
Normal
0.0
868
Normal
0.0
965
Tumor
0.0
1014
Normal
0.0
278
Normal
0.0
494
Normal
0.0
525
Tumor
0.0
537
Tumor
0.0
746
Normal
-0.1
138
Normal
-0.1
723
Tumor
-0.1
223
Tumor
-0.1
436
Normal
-0.1
394
Normal
-0.1
864
Normal
-0.1
722
Normal
-0.1
448
Normal
-0.1
298
Normal
-0.1
923
Tumor
-0.1
392
Normal
-0.1
862
Normal
-0.1
564
Normal
-0.1
721
Tumor
-0.1
327
Tumor
-0.1
951
Tumor
-0.1
232
Normal
-0.1
262
Normal
-0.1
376
Normal
-0.1
111
Normal
-0.1
963
Tumor
-0.1
396
Normal
-0.1
386
Normal
-0.1
488
Normal
-0.1
1025
Tumor
-0.1
1041
Tumor
-0.1
375
Tumor
-0.1
261
Tumor
-0.1
553
Tumor
-0.1
978
Normal
-0.1
526
Normal
-0.1
388
Normal
-0.1
128
Normal
-0.1
874
Normal
-0.1
492
Normal
-0.1
352
Normal
-0.1
186
Normal
-0.1
312
Normal
-0.2
572
Normal
-0.2
125
Tumor
-0.2
415
Tumor
-0.2
211
Tumor
-0.2
188
Normal
-0.2
922
Normal
-0.2
984
Normal
-0.2
1016
Normal
-0.2
937
Tumor
-0.2
195
Tumor
-0.2
344
Normal
-0.2
686
Normal
-0.2
568
Normal
-0.2
358
Normal
-0.2
114
Normal
-0.2
142
Normal
-0.2
982
Normal
-0.2
716
Normal
-0.2
385
Tumor
-0.2
368
Normal
-0.2
354
Normal
-0.2
434
Normal
-0.2
342
Normal
-0.2
515
Tumor
-0.2
926
Normal
-0.2
432
Normal
-0.2
412
Normal
-0.2
813
Tumor
-0.2
866
Normal
-0.2
212
Normal
-0.2
148
Normal
-0.2
185
Tumor
-0.2
283
Tumor
-0.2
728
Normal
-0.2
161
Tumor
-0.2
528
Normal
-0.2
815
Tumor
-0.2
416
Normal
-0.2
535
Tumor
-0.2
536
Normal
-0.2
444
Normal
-0.2
918
Normal
-0.2
286
Normal
-0.2
395
Tumor
-0.2
493
Tumor
-0.2
362
Normal
-0.2
482
Normal
-0.2
698
Normal
-0.3
126
Normal
-0.3
914
Normal
-0.3
516
Normal
-0.3
738
Normal
-0.3
124
Normal
-0.3
715
Tumor
-0.3
228
Normal
-0.3
474
Normal
-0.3
617
Tumor
-0.3
462
Normal
-0.3
882
Normal
-0.3
284
Normal
-0.3
343
Tumor
-0.3
514
Normal
-0.3
447
Tumor
-0.3
744
Normal
-0.3
742
Normal
-0.3
1031
Tumor
-0.3
172
Normal
-0.3
636
Normal
-0.3
1046
Normal
-0.3
518
Normal
-0.3
924
Normal
-0.3
958
Normal
-0.3
268
Normal
-0.3
778
Normal
-0.3
881
Tumor
-0.3
953
Tumor
-0.3
472
Normal
-0.3
162
Normal
-0.3
478
Normal
-0.4
916
Normal
-0.4
884
Normal
-0.4
957
Tumor
-0.4
524
Normal
-0.4
523
Tumor
-0.4
498
Normal
-0.4
527
Tumor
-0.4
696
Normal
-0.4
851
Tumor
-0.4
222
Normal
-0.4
857
Tumor
-0.4
146
Normal
-0.4
966
Normal
-0.4
818
Normal
-0.4
814
Normal
-0.4
858
Normal
-0.4
964
Normal
-0.4
975
Tumor
-0.4
824
Normal
-0.4
224
Normal
-0.4
534
Normal
-0.4
355
Tumor
-0.4
976
Normal
-0.4
618
Normal
-0.4
214
Normal
-0.4
554
Normal
-0.4
944
Normal
-0.4
616
Normal
-0.4
384
Normal
-0.5
546
Normal
-0.5
311
Tumor
-0.5
366
Normal
-0.5
1042
Normal
-0.5
628
Normal
-0.5
917
Tumor
-0.5
217
Tumor
-0.5
878
Normal
-0.5
1032
Normal
-0.5
1026
Normal
-0.5
943
Tumor
-0.5
642
Normal
-0.5
955
Tumor
-0.5
533
Tumor
-0.5
817
Tumor
-0.6
196
Normal
-0.6
968
Normal
-0.6
1028
Normal
-0.6
938
Normal
-0.6
538
Normal
-0.6
1044
Normal
-0.6
956
Normal
-0.6
954
Normal
-0.7
952
Normal
-0.7
1022
Normal
-0.7
816
Normal
-0.7
852
Normal
-0.7
545
Tumor
-0.8
218
Normal
-0.8
192
Normal
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
