We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
78.2
nTPM
HPA Brain:
56.6
nTPM
GTEx:
78.2
nTPM
FANTOM5:
105.4
Scaled Tags Per Million
Pig:
67.1
nTPM
Mouse:
49.0
nTPM
Allen mouse:
1.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 33.6
2666
Male, age 74, left hemisphere
52.1
2828
Female, age 72, unknown
42.7
2019
Male, age 18, unknown
42.0
1830
Male, age 51, unknown
38.3
2411
Female, age 72, unknown
37.3
1833
Male, age 53, unknown
30.7
1870
Female, age 42, unknown
29.4
1827
Male, age 72, unknown
28.7
2219
Male, age 76, both hemispheres
17.6
2586
Male, age 75, left hemisphere
17.6
Dorsal raphe nucleus nTPM: 49.4
2298
Female, age 72, unknown
79.3
2016
Female, age 72, unknown
56.6
2750
Male, age 76, both hemispheres
41.6
1828
Male, age 53, unknown
38.6
2047
Male, age 72, unknown
30.8
Inferior colliculus nTPM: 34.9
2097
Female, age 72, unknown
47.2
1890
Male, age 53, unknown
34.8
1848
Female, age 42, unknown
30.4
2849
Male, age 72, unknown
27.3
Median raphe nucleus nTPM: 32.5
2220
Male, age 76, midline
32.5
Periaquaductal grey, anterior nTPM: 30.6
1795
Male, age 51, unknown
43.3
2502
Female, age 75, unknown
24.5
1947
Male, age 18, unknown
24.1
Periaquaductal grey, dorsal nTPM: 48.9
1831
Male, age 72, unknown
68.3
1840
Male, age 53, unknown
43.9
2850
Male, age 76, both hemispheres
41.8
2464
Female, age 72, unknown
41.7
Periaquaductal grey, lateral nTPM: 50.3
2272
Male, age 74, both hemispheres
64.7
2053
Male, age 18, unknown
43.7
2140
Male, age 76, both hemispheres
42.5
Pretectal area nTPM: 40.5
2316
Male, age 76, right hemisphere
50.5
2273
Male, age 74, both hemispheres
49.7
2224
Female, age 72, unknown
49.0
2407
Male, age 75, both hemispheres
48.3
2007
Male, age 72, unknown
44.3
1817
Female, age 42, unknown
42.7
1944
Female, age 72, unknown
40.4
1815
Male, age 53, unknown
36.1
2825
Male, age 18, unknown
31.7
2667
Female, age 75, unknown
28.4
1816
Male, age 51, unknown
24.2
Red nucleus nTPM: 36.2
2503
Female, age 72, unknown
54.7
2725
Female, age 75, unknown
46.3
2769
Male, age 72, unknown
43.7
1865
Male, age 51, unknown
42.1
2227
Male, age 72, unknown
40.2
2785
Male, age 18, unknown
38.6
2823
Male, age 76, right hemisphere
38.3
1904
Male, age 53, unknown
36.2
1821
Female, age 72, unknown
32.0
1954
Female, age 42, unknown
23.9
2584
Male, age 75, left hemisphere
21.8
2588
Male, age 74, left hemisphere
17.1
Substantia nigra nTPM: 56.6
2590
Female, age 75, unknown
98.4
2699
Male, age 18, unknown
79.2
2665
Male, age 74, both hemispheres
76.9
1916
Female, age 42, unknown
57.1
1851
Male, age 51, unknown
55.6
2409
Female, age 72, unknown
55.6
1941
Male, age 53, unknown
42.8
2583
Male, age 75, right hemisphere
37.8
2241
Male, age 72, unknown
34.2
1889
Female, age 72, unknown
28.6
Superior colliculus nTPM: 42.7
1913
Female, age 42, unknown
73.1
1995
Male, age 72, unknown
55.9
2587
Male, age 74, left hemisphere
54.4
2087
Female, age 72, unknown
44.8
1796
Male, age 53, unknown
43.4
2664
Male, age 75, both hemispheres
35.2
1839
Male, age 51, unknown
34.9
2261
Male, age 18, unknown
31.5
1895
Male, age 76, right hemisphere
27.2
2668
Female, age 75, unknown
26.8
Ventral tegmental area nTPM: 55.1
2021
Male, age 53, unknown
85.9
1915
Female, age 42, unknown
62.5
2410
Female, age 72, unknown
53.0
2218
Male, age 76, both hemispheres
50.4
1942
Male, age 51, unknown
44.7
2223
Female, age 72, unknown
34.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
78.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 78.2
Samples: 139
Max nTPM: 544.2
Min nTPM: 5.4
Std nTPM: 80.0
Median nTPM: 49.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
544.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
439.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
282.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
276.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
274.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
261.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
253.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
223.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
220.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
216.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
181.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
173.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
169.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
168.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
166.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
162.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
157.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
157.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
151.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
147.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
146.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
137.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
132.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
132.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
130.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
124.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
119.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
118.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
117.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
113.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
110.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
105.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
102.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
102.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
102.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
100.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
99.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
99.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
98.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
95.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
94.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
89.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
87.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
87.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
85.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
83.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
81.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
77.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
75.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
74.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
74.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
72.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
70.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
67.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
66.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
66.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
65.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
63.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
62.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
61.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
61.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
59.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
58.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
58.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
57.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
53.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
51.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
51.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
50.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
49.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
48.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
48.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
46.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
45.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
45.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
44.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
44.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
44.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
43.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
42.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
41.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
40.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
40.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
39.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
39.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
37.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
36.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
36.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
36.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
36.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
35.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
34.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
33.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
32.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
32.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
32.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
31.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
31.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
31.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
31.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
31.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
30.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
30.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
30.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
29.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
28.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
27.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
27.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
24.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
24.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
24.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
23.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
23.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
23.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
22.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
21.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
21.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
21.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
19.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
19.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
19.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
17.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
17.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
16.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
15.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
14.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
13.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
12.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
12.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
11.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
11.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
10.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
9.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
9.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
9.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
7.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
7.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
5.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
5.4
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
49.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 49.0
Samples: 4
Max nTPM: 55.5
Min nTPM: 41.9
Sample A
Male
55.5
Sample B
Male
41.9
Sample C
Female
44.8
Sample D
Female
53.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.