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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
43.4
nTPM
HPA Brain:
39.7
nTPM
GTEx:
43.4
nTPM
FANTOM5:
53.7
Scaled Tags Per Million
Pig:
33.6
nTPM
Mouse:
82.0
nTPM
Allen mouse:
2.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA002350
Antibody CAB009823
Glial cells
Not detected
Not detected
Neuronal cells
Not detected
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.7
Sample id
Sample description
nTPM
Hippocampus nTPM: 39.7
2621
Female, age 67, right hemisphere
61.1
1898
Male, age 80, left hemisphere
48.4
1855
Male, age 76, left hemisphere
45.8
1911
Female, age 85, right hemisphere
32.2
2148
Female, age 91, left hemisphere
25.5
2529
Female, age 94, left hemisphere
25.0
Dentate gyrus nTPM: 28.7
2531
Female, age 67, both hemispheres
33.1
2010
Male, age 76, both hemispheres
32.5
1927
Female, age 91, both hemispheres
28.6
2530
Female, age 94, left hemisphere
27.4
2528
Male, age 74, both hemispheres
26.9
2246
Female, age 85, both hemispheres
23.4
Entorhinal gyrus nTPM: 27.7
2117
Female, age 91, right hemisphere
45.6
1787
Male, age 76, left hemisphere
36.1
2764
Male, age 80, right hemisphere
24.5
2613
Female, age 94, left hemisphere
24.3
1938
Female, age 85, left hemisphere
21.7
2686
Male, age 75, right hemisphere
13.7
Hippocampus, CA1 nTPM: 26.9
2082
Female, age 91, right hemisphere
34.2
2045
Male, age 76, both hemispheres
31.9
1873
Female, age 85, both hemispheres
29.5
2527
Male, age 74, both hemispheres
20.3
2749
Male, age 80, left hemisphere
18.6
Hippocampus, CA2 nTPM: 35.5
1940
Female, age 85, left hemisphere
57.9
2113
Female, age 91, right hemisphere
36.1
1892
Male, age 76, both hemispheres
35.1
2437
Female, age 94, left hemisphere
32.8
1963
Male, age 80, left hemisphere
30.3
2249
Male, age 74, both hemispheres
21.0
Hippocampus, CA3 nTPM: 24.2
1867
Male, age 76, both hemispheres
41.2
1891
Female, age 85, both hemispheres
28.7
2861
Female, age 67, both hemispheres
28.1
2436
Male, age 74, both hemispheres
19.9
2137
Male, age 80, left hemisphere
19.3
2620
Female, age 94, left hemisphere
7.7
Parahippocampal cortex nTPM: 32.6
2250
Female, age 67, right hemisphere
126.7
2018
Male, age 76, both hemispheres
42.2
2693
Female, age 94, both hemispheres
26.9
1990
Female, age 91, right hemisphere
25.0
2245
Female, age 91, both hemispheres
24.2
1850
Male, age 80, both hemispheres
22.4
1933
Female, age 85, both hemispheres
15.8
2692
Male, age 74, both hemispheres
15.8
2532
Female, age 72, left hemisphere
14.1
2622
Female, age 67, right hemisphere
12.6
Perirhinal gyrus nTPM: 30.8
2521
Female, age 94, right hemisphere
48.8
1841
Female, age 85, right hemisphere
28.1
1847
Female, age 91, left hemisphere
26.6
1794
Male, age 80, right hemisphere
25.9
2848
Male, age 76, right hemisphere
24.8
Subiculum nTPM: 31.5
2042
Male, age 76, both hemispheres
47.9
2729
Female, age 91, right hemisphere
44.7
1901
Male, age 80, both hemispheres
27.5
2619
Male, age 74, both hemispheres
26.2
2438
Female, age 94, left hemisphere
21.8
1977
Female, age 85, both hemispheres
20.8
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
43.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 43.4
Samples: 197
Max nTPM: 520.0
Min nTPM: 3.0
Std nTPM: 60.3
Median nTPM: 25.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
520.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
358.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
293.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
282.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
256.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
214.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
200.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
156.9
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
135.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
134.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
119.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
115.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
109.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
96.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
94.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
93.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
93.5
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
89.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
89.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
88.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
87.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
85.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
78.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
76.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
75.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
73.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
73.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
70.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
69.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
66.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
64.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
63.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
62.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
62.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
60.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
60.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
60.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
59.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
58.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
57.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
57.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
55.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
54.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
53.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
52.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
52.7
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
51.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
51.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
51.1
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
50.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
50.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
49.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
48.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
47.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
47.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
46.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
45.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
45.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
45.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
44.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
43.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
42.3
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
41.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
40.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
40.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
40.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
39.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
39.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
39.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
37.4
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
36.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
36.1
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
35.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
34.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
34.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
34.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
34.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
33.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
33.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
31.5
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
30.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
29.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
29.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
29.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
28.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
28.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
28.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
27.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
27.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
27.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
26.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
26.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
26.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
26.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
26.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
25.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
25.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
25.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
25.4
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
25.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
25.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
25.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
24.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
24.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
24.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
23.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
23.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
22.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
22.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
22.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
22.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
22.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
21.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
21.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
21.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
21.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
21.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
20.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
20.5
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
20.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
20.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
20.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
20.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
19.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
19.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
18.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
18.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
18.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
18.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
17.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
17.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
17.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
17.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
17.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
17.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
16.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
16.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
16.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
16.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
15.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
14.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
14.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
14.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
14.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
13.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
13.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
13.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
12.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
12.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
12.5
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
12.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
12.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
12.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
12.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
11.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
11.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
11.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
11.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
11.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
11.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
11.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
10.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
10.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
10.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
10.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
10.4
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
10.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
10.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
10.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
9.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
9.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
9.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
9.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
9.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
9.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
8.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
8.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
8.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
8.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
8.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
8.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
7.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
7.3
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
7.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
7.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
6.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
5.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
5.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
5.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
4.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
4.7
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
4.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
4.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
4.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
4.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
3.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
3.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
82.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 81.9
Samples: 4
Max nTPM: 86.5
Min nTPM: 73.5
Sample A
Male
83.8
Sample B
Male
73.5
Sample C
Female
86.5
Sample D
Female
83.9
Hippocampal formation nTPM: 76.8
Samples: 4
Max nTPM: 85.2
Min nTPM: 65.5
Sample A
Male
78.4
Sample B
Male
65.5
Sample C
Female
78.1
Sample D
Female
85.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.