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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KRT8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
460.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3153.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2904.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2781.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2603.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2193.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1578.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1529.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1516.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1475.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1373.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1226.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1199.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1191.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1142.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1125.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1119.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1110.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1081.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1075.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1058.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1042.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1028.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
989.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
974.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
953.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
952.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
951.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
916.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
899.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
879.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
876.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
851.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
841.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
833.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
801.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
769.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
766.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
765.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
742.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
733.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
723.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
718.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
711.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
709.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
704.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
698.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
696.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
693.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
688.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
672.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
671.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
653.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
649.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
645.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
644.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
644.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
641.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
640.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
638.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
637.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
637.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
635.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
631.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
625.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
622.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
621.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
617.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
613.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
607.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
606.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
605.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
604.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
603.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
597.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
597.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
597.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
597.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
595.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
589.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
588.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
582.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
582.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
578.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
575.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
574.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
572.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
570.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
568.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
567.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
566.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
565.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
562.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
558.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
558.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
558.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
556.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
556.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
554.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
551.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
551.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
546.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
546.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
541.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
540.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
532.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
531.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
522.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
522.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
519.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
518.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
517.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
515.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
512.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
511.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
508.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
506.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
504.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
502.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
498.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
496.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
492.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
491.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
491.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
491.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
489.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
483.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
482.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
481.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
477.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
477.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
473.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
470.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
468.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
468.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
466.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
461.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
459.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
458.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
458.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
457.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
451.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
448.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
448.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
442.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
438.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
438.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
435.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
433.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
431.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
430.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
424.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
422.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
420.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
420.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
419.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
413.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
413.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
412.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
409.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
403.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
397.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
397.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
393.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
391.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
390.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
389.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
387.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
386.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
384.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
383.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
383.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
377.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
374.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
374.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
374.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
374.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
372.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
372.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
371.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
371.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
370.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
366.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
366.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
365.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
363.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
361.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
361.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
358.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
357.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
357.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
349.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
348.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
348.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
345.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
344.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
343.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
343.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
340.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
339.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
338.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
338.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
337.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
336.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
334.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
334.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
331.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
330.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
330.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
330.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
329.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
327.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
326.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
324.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
322.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
320.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
320.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
319.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
319.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
318.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
318.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
315.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
307.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
306.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
302.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
302.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
301.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
300.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
298.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
298.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
298.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
297.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
297.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
295.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
295.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
295.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
295.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
295.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
294.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
293.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
292.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
292.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
291.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
287.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
286.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
282.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
282.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
281.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
281.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
280.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
280.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
280.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
279.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
277.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
276.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
273.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
267.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
266.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
265.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
264.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
261.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
260.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
256.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
256.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
254.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
254.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
253.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
249.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
249.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
248.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
246.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
244.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
244.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
243.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
243.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
241.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
239.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
238.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
238.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
238.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
237.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
237.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
235.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
234.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
228.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
225.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
225.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
224.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
221.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
220.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
220.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
219.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
219.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
217.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
211.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
210.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
209.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
208.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
206.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
205.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
205.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
205.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
202.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
201.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
201.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
199.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
197.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
194.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
190.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
189.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
188.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
185.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
185.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
184.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
183.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
182.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
181.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
181.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
178.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
176.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
175.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
174.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
173.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
168.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
163.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
162.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
160.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
159.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
159.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
156.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
156.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
154.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
148.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
147.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
146.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
142.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
140.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
139.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
138.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
137.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
137.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
132.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
131.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
129.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
124.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
123.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
122.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
121.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
120.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
111.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
110.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
108.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
107.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
106.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
104.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
104.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
100.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
90.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
88.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
80.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
72.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
61.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KRT8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
419.2
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
4495.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3964.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
2661.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2547.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
1811.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
1734.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
1697.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
1404.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
1191.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
1144.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
1057.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
947.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
947.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
904.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
871.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
866.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
813.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
788.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
786.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
783.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
782.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
769.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
763.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
761.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
734.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
711.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
705.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
703.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
690.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
675.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
674.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
672.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
654.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
626.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
617.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
601.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
599.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
598.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
580.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
577.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
570.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
567.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
554.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
549.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
547.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
544.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
539.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
539.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
539.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
535.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
535.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
534.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
518.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
515.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
496.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
488.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
487.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
483.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
480.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
466.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
458.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
457.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
455.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
451.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
449.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
442.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
441.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
437.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
433.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
429.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
429.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
426.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
415.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
411.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
407.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
407.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
406.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
402.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
402.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
393.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
387.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
387.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
381.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
379.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
375.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
374.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
373.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
366.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
361.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
356.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
352.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
349.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
347.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
347.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
343.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
343.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
342.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
335.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
330.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
329.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
325.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
319.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
318.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
318.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
317.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
315.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
314.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
311.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
301.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
299.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
297.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
296.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
295.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
289.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
288.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
287.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
286.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
284.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
283.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
281.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
279.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
278.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
276.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
272.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
272.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
268.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
267.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
266.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
264.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
263.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
261.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
260.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
259.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
259.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
259.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
254.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
254.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
250.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
250.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
248.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
243.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
242.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
241.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
239.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
239.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
238.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
236.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
235.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
235.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
235.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
231.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
226.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
222.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
214.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
208.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
207.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
207.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
206.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
206.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
202.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
202.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
201.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
200.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
196.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
195.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
192.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
192.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
192.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
188.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
186.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
185.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
184.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
183.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
181.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
181.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
179.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
179.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
178.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
176.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
176.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
175.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
175.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
171.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
170.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
166.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
165.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
164.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
162.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
160.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
160.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
160.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
159.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
157.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
155.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
154.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
153.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
152.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
151.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
148.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
148.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
144.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
143.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
143.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
138.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
133.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
129.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
124.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
119.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
119.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
115.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
113.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
112.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
105.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
104.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
102.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
97.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
96.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
92.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
92.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
87.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
85.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
82.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
81.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
72.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
67.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
57.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
51.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
48.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
40.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.9
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LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.1
535
Tumor
1.1
477
Tumor
0.9
1032
Normal
0.8
955
Tumor
0.8
746
Normal
0.8
284
Normal
0.8
873
Tumor
0.8
685
Tumor
0.7
917
Tumor
0.7
878
Normal
0.7
478
Normal
0.7
868
Normal
0.7
363
Tumor
0.7
513
Tumor
0.7
1028
Normal
0.7
715
Tumor
0.7
984
Normal
0.7
492
Normal
0.7
514
Normal
0.7
498
Normal
0.7
916
Normal
0.7
956
Normal
0.7
866
Normal
0.7
745
Tumor
0.7
328
Normal
0.7
268
Normal
0.6
852
Normal
0.6
395
Tumor
0.6
864
Normal
0.6
722
Normal
0.6
954
Normal
0.6
538
Normal
0.6
311
Tumor
0.6
944
Normal
0.6
524
Normal
0.6
937
Tumor
0.6
741
Tumor
0.6
534
Normal
0.5
721
Tumor
0.5
212
Normal
0.5
616
Normal
0.5
738
Normal
0.5
536
Normal
0.5
982
Normal
0.5
462
Normal
0.5
527
Tumor
0.5
494
Normal
0.5
938
Normal
0.5
824
Normal
0.5
874
Normal
0.5
918
Normal
0.5
926
Normal
0.5
558
Normal
0.5
958
Normal
0.5
716
Normal
0.5
474
Normal
0.5
137
Tumor
0.5
728
Normal
0.4
698
Normal
0.4
444
Normal
0.4
546
Normal
0.4
327
Tumor
0.4
1045
Tumor
0.4
1042
Normal
0.4
714
Normal
0.4
484
Normal
0.4
528
Normal
0.4
924
Normal
0.4
424
Normal
0.4
686
Normal
0.4
428
Normal
0.4
364
Normal
0.4
817
Tumor
0.4
416
Normal
0.4
188
Normal
0.4
976
Normal
0.4
554
Normal
0.4
966
Normal
0.4
228
Normal
0.3
695
Tumor
0.3
1014
Normal
0.3
786
Normal
0.3
232
Normal
0.3
737
Tumor
0.3
314
Normal
0.3
755
Tumor
0.3
367
Tumor
0.3
952
Normal
0.3
696
Normal
0.3
553
Tumor
0.3
922
Normal
0.3
128
Normal
0.3
572
Normal
0.3
1022
Normal
0.3
388
Normal
0.3
278
Normal
0.3
533
Tumor
0.3
627
Tumor
0.3
136
Normal
0.3
362
Normal
0.3
452
Normal
0.3
975
Tumor
0.3
392
Normal
0.3
778
Normal
0.3
697
Tumor
0.3
564
Normal
0.3
148
Normal
0.3
448
Normal
0.3
261
Tumor
0.3
376
Normal
0.3
756
Normal
0.3
884
Normal
0.3
412
Normal
0.3
863
Tumor
0.3
472
Normal
0.2
356
Normal
0.2
1031
Tumor
0.2
1015
Tumor
0.2
724
Normal
0.2
464
Normal
0.2
642
Normal
0.2
426
Normal
0.2
978
Normal
0.2
368
Normal
0.2
526
Normal
0.2
312
Normal
0.2
162
Normal
0.2
981
Tumor
0.2
516
Normal
0.2
224
Normal
0.2
142
Normal
0.2
882
Normal
0.2
964
Normal
0.2
387
Tumor
0.2
465
Tumor
0.2
172
Normal
0.2
977
Tumor
0.2
914
Normal
0.2
415
Tumor
0.2
818
Normal
0.2
468
Normal
0.2
414
Normal
0.2
488
Normal
0.2
466
Normal
0.2
618
Normal
0.2
983
Tumor
0.2
135
Tumor
0.1
1016
Normal
0.1
951
Tumor
0.1
1046
Normal
0.1
617
Tumor
0.1
138
Normal
0.1
446
Normal
0.1
515
Tumor
0.1
413
Tumor
0.1
881
Tumor
0.1
394
Normal
0.1
1026
Normal
0.1
126
Normal
0.1
352
Normal
0.1
968
Normal
0.1
384
Normal
0.1
443
Tumor
0.1
921
Tumor
0.1
262
Normal
0.1
816
Normal
0.1
628
Normal
0.1
518
Normal
0.1
563
Tumor
0.1
286
Normal
0.1
187
Tumor
0.1
574
Normal
0.1
221
Tumor
0.1
423
Tumor
0.1
145
Tumor
0.0
662
Normal
0.0
214
Normal
0.0
744
Normal
0.0
447
Tumor
0.0
1044
Normal
0.0
723
Tumor
0.0
222
Normal
0.0
482
Normal
0.0
636
Normal
0.0
911
Tumor
0.0
451
Tumor
0.0
365
Tumor
0.0
641
Tumor
0.0
471
Tumor
0.0
396
Normal
0.0
635
Tumor
0.0
258
Normal
0.0
1027
Tumor
0.0
422
Normal
0.0
332
Normal
0.0
344
Normal
0.0
455
Tumor
0.0
1021
Tumor
0.0
615
Tumor
0.0
272
Normal
0.0
386
Normal
0.0
132
Normal
0.0
146
Normal
0.0
112
Tumor
0.0
943
Tumor
0.0
186
Normal
-0.1
358
Normal
-0.1
461
Tumor
-0.1
354
Normal
-0.1
545
Tumor
-0.1
923
Tumor
-0.1
861
Tumor
-0.1
785
Tumor
-0.1
664
Normal
-0.1
131
Tumor
-0.1
124
Normal
-0.1
913
Tumor
-0.1
436
Normal
-0.1
456
Normal
-0.1
425
Tumor
-0.1
672
Normal
-0.1
858
Normal
-0.1
393
Tumor
-0.1
648
Normal
-0.1
1025
Tumor
-0.1
851
Tumor
-0.1
366
Normal
-0.1
912
Normal
-0.1
111
Normal
-0.1
497
Tumor
-0.2
491
Tumor
-0.2
432
Normal
-0.2
391
Tumor
-0.2
867
Tumor
-0.2
742
Normal
-0.2
298
Normal
-0.2
573
Tumor
-0.2
195
Tumor
-0.2
433
Tumor
-0.2
823
Tumor
-0.2
957
Tumor
-0.2
777
Tumor
-0.2
493
Tumor
-0.2
171
Tumor
-0.2
862
Normal
-0.2
857
Tumor
-0.3
815
Tumor
-0.3
915
Tumor
-0.3
127
Tumor
-0.3
196
Normal
-0.3
568
Normal
-0.3
114
Normal
-0.3
217
Tumor
-0.3
341
Tumor
-0.3
123
Tumor
-0.3
231
Tumor
-0.3
666
Normal
-0.3
814
Normal
-0.3
557
Tumor
-0.3
355
Tumor
-0.4
713
Tumor
-0.4
434
Normal
-0.4
517
Tumor
-0.4
421
Tumor
-0.4
191
Tumor
-0.4
361
Tumor
-0.4
481
Tumor
-0.4
1041
Tumor
-0.4
671
Tumor
-0.4
192
Normal
-0.4
185
Tumor
-0.5
147
Tumor
-0.5
218
Normal
-0.5
883
Tumor
-0.5
342
Normal
-0.5
297
Tumor
-0.5
213
Tumor
-0.5
113
Tumor
-0.5
375
Tumor
-0.5
353
Tumor
-0.5
571
Tumor
-0.5
483
Tumor
-0.6
967
Tumor
-0.6
877
Tumor
-0.6
331
Tumor
-0.6
665
Tumor
-0.6
523
Tumor
-0.6
467
Tumor
-0.6
285
Tumor
-0.6
865
Tumor
-0.7
383
Tumor
-0.7
567
Tumor
-0.7
1043
Tumor
-0.7
385
Tumor
-0.7
813
Tumor
-0.7
271
Tumor
-0.7
431
Tumor
-0.8
965
Tumor
-0.8
267
Tumor
-0.8
537
Tumor
-0.9
277
Tumor
-0.9
351
Tumor
-0.9
525
Tumor
-0.9
1013
Tumor
-0.9
357
Tumor
-0.9
953
Tumor
-0.9
727
Tumor
-1.0
257
Tumor
-1.0
963
Tumor
-1.0
427
Tumor
-1.0
227
Tumor
-1.0
141
Tumor
-1.0
283
Tumor
-1.0
223
Tumor
-1.0
463
Tumor
-1.1
125
Tumor
-1.1
647
Tumor
-1.1
161
Tumor
-1.1
743
Tumor
-1.1
343
Tumor
-1.1
487
Tumor
-1.2
411
Tumor
-1.2
435
Tumor
-1.2
313
Tumor
-1.3
661
Tumor
-1.3
473
Tumor
-1.4
445
Tumor
-1.4
211
Tumor
-1.5
663
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.