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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATP5ME is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
781.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3187.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2702.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2410.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2346.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2317.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2273.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2225.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2045.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1941.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1817.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1788.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1758.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1727.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1694.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1614.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1558.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1551.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1547.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1545.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1518.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1413.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1411.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1395.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1383.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1336.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1320.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1301.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1299.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1293.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1286.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1270.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1265.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1239.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1236.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1217.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1215.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1198.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1196.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1193.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1189.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1166.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1156.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1153.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1144.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1130.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1113.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1105.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1104.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1102.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1100.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1094.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1083.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1070.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1067.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1065.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1062.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1062.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1061.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1058.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1054.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1050.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1042.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1041.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1037.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1019.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1018.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1016.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1013.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1001.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1001.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
996.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
977.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
974.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
970.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
968.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
968.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
965.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
963.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
963.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
959.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
959.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
952.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
943.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
940.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
936.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
932.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
931.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
928.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
927.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
926.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
921.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
920.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
916.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
915.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
913.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
909.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
900.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
895.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
889.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
886.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
881.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
873.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
866.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
865.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
865.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
864.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
863.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
861.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
860.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
858.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
857.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
855.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
854.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
850.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
848.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
838.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
836.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
833.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
822.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
822.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
818.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
815.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
815.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
812.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
809.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
806.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
801.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
801.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
795.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
795.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
792.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
792.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
787.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
781.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
780.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
773.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
772.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
772.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
772.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
771.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
771.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
766.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
762.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
758.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
753.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
750.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
748.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
746.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
745.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
744.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
744.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
743.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
742.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
742.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
740.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
739.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
736.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
735.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
734.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
733.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
733.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
730.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
728.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
719.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
718.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
718.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
717.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
717.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
713.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
713.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
710.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
710.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
701.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
691.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
691.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
691.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
689.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
687.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
685.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
683.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
682.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
680.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
680.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
680.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
674.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
673.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
671.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
670.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
669.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
664.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
661.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
660.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
659.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
659.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
656.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
656.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
656.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
655.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
654.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
651.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
649.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
644.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
642.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
636.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
635.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
634.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
633.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
633.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
632.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
631.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
626.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
625.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
623.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
623.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
619.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
618.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
618.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
616.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
616.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
613.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
612.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
610.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
609.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
609.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
606.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
602.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
599.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
599.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
599.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
598.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
598.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
597.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
597.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
597.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
591.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
590.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
590.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
589.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
585.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
585.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
574.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
573.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
572.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
568.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
567.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
567.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
567.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
565.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
562.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
560.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
556.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
555.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
555.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
554.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
553.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
551.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
550.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
548.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
548.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
546.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
545.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
544.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
543.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
542.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
542.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
541.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
539.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
538.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
537.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
536.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
536.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
535.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
535.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
535.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
533.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
529.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
525.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
525.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
525.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
523.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
521.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
517.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
515.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
515.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
512.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
505.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
505.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
501.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
501.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
501.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
500.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
500.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
499.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
494.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
488.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
488.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
487.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
486.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
484.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
483.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
481.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
481.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
481.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
480.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
476.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
473.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
468.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
467.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
467.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
466.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
462.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
459.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
458.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
457.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
455.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
454.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
452.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
452.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
450.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
446.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
446.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
445.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
444.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
442.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
436.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
434.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
432.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
430.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
426.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
425.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
421.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
417.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
411.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
409.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
409.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
406.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
405.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
404.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
403.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
400.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
389.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
389.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
389.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
388.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
383.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
383.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
383.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
379.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
370.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
369.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
359.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
358.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
354.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
352.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
340.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
336.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
293.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
291.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
289.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
288.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
273.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.4
513
Tumor
1.0
1043
Tumor
0.9
1025
Tumor
0.9
922
Normal
0.8
448
Normal
0.8
1045
Tumor
0.8
882
Normal
0.7
824
Normal
0.7
756
Normal
0.7
745
Tumor
0.7
912
Normal
0.7
515
Tumor
0.7
571
Tumor
0.7
227
Tumor
0.7
818
Normal
0.7
534
Normal
0.7
1032
Normal
0.7
1014
Normal
0.6
1046
Normal
0.6
982
Normal
0.6
823
Tumor
0.6
361
Tumor
0.6
714
Normal
0.6
868
Normal
0.6
487
Tumor
0.6
723
Tumor
0.6
862
Normal
0.6
472
Normal
0.6
488
Normal
0.6
785
Tumor
0.6
564
Normal
0.6
944
Normal
0.6
938
Normal
0.6
722
Normal
0.6
695
Tumor
0.6
1022
Normal
0.6
864
Normal
0.6
464
Normal
0.6
858
Normal
0.5
958
Normal
0.5
746
Normal
0.5
356
Normal
0.5
1042
Normal
0.5
738
Normal
0.5
852
Normal
0.5
918
Normal
0.5
924
Normal
0.5
456
Normal
0.5
786
Normal
0.5
698
Normal
0.5
484
Normal
0.5
546
Normal
0.5
1044
Normal
0.5
514
Normal
0.5
328
Normal
0.5
452
Normal
0.5
1013
Tumor
0.5
462
Normal
0.5
713
Tumor
0.5
925
Tumor
0.5
568
Normal
0.5
926
Normal
0.5
1026
Normal
0.5
964
Normal
0.5
984
Normal
0.5
128
Normal
0.5
436
Normal
0.5
416
Normal
0.5
162
Normal
0.5
412
Normal
0.5
528
Normal
0.5
365
Tumor
0.5
394
Normal
0.5
742
Normal
0.5
228
Normal
0.5
981
Tumor
0.5
923
Tumor
0.4
232
Normal
0.4
616
Normal
0.4
978
Normal
0.4
636
Normal
0.4
364
Normal
0.4
878
Normal
0.4
426
Normal
0.4
728
Normal
0.4
388
Normal
0.4
954
Normal
0.4
494
Normal
0.4
648
Normal
0.4
915
Tumor
0.4
1041
Tumor
0.4
466
Normal
0.4
136
Normal
0.4
696
Normal
0.4
1027
Tumor
0.4
423
Tumor
0.4
716
Normal
0.4
414
Normal
0.4
518
Normal
0.4
615
Tumor
0.4
618
Normal
0.4
428
Normal
0.4
344
Normal
0.4
867
Tumor
0.4
474
Normal
0.4
424
Normal
0.4
816
Normal
0.4
866
Normal
0.4
446
Normal
0.4
755
Tumor
0.4
916
Normal
0.4
952
Normal
0.4
572
Normal
0.3
686
Normal
0.3
914
Normal
0.3
465
Tumor
0.3
258
Normal
0.3
483
Tumor
0.3
517
Tumor
0.3
1016
Normal
0.3
286
Normal
0.3
863
Tumor
0.3
628
Normal
0.3
376
Normal
0.3
874
Normal
0.3
526
Normal
0.3
314
Normal
0.3
284
Normal
0.3
741
Tumor
0.3
358
Normal
0.3
956
Normal
0.3
142
Normal
0.3
196
Normal
0.3
482
Normal
0.3
298
Normal
0.3
967
Tumor
0.3
172
Normal
0.3
222
Normal
0.3
432
Normal
0.3
278
Normal
0.3
976
Normal
0.3
966
Normal
0.3
873
Tumor
0.3
422
Normal
0.3
727
Tumor
0.3
148
Normal
0.3
114
Normal
0.3
363
Tumor
0.2
1028
Normal
0.2
362
Normal
0.2
392
Normal
0.2
132
Normal
0.2
558
Normal
0.2
955
Tumor
0.2
664
Normal
0.2
1031
Tumor
0.2
524
Normal
0.2
354
Normal
0.2
537
Tumor
0.2
214
Normal
0.2
968
Normal
0.2
884
Normal
0.2
342
Normal
0.2
468
Normal
0.2
411
Tumor
0.2
666
Normal
0.2
111
Normal
0.2
523
Tumor
0.2
393
Tumor
0.2
778
Normal
0.2
352
Normal
0.2
396
Normal
0.2
386
Normal
0.2
366
Normal
0.2
224
Normal
0.2
212
Normal
0.2
332
Normal
0.2
138
Normal
0.1
327
Tumor
0.1
257
Tumor
0.1
574
Normal
0.1
415
Tumor
0.1
525
Tumor
0.1
536
Normal
0.1
538
Normal
0.1
272
Normal
0.1
145
Tumor
0.1
697
Tumor
0.1
516
Normal
0.1
491
Tumor
0.1
186
Normal
0.1
744
Normal
0.1
662
Normal
0.1
953
Tumor
0.1
461
Tumor
0.1
368
Normal
0.1
353
Tumor
0.1
911
Tumor
0.1
777
Tumor
0.1
218
Normal
0.1
642
Normal
0.1
312
Normal
0.1
554
Normal
0.1
477
Tumor
0.1
672
Normal
0.1
857
Tumor
0.1
481
Tumor
0.1
451
Tumor
0.1
635
Tumor
0.1
492
Normal
0.1
478
Normal
0.0
188
Normal
0.0
262
Normal
0.0
527
Tumor
0.0
146
Normal
0.0
498
Normal
0.0
921
Tumor
0.0
721
Tumor
0.0
815
Tumor
0.0
557
Tumor
-0.1
434
Normal
-0.1
443
Tumor
-0.1
563
Tumor
-0.1
957
Tumor
-0.1
427
Tumor
-0.1
261
Tumor
-0.1
137
Tumor
-0.1
951
Tumor
-0.1
113
Tumor
-0.1
126
Normal
-0.1
268
Normal
-0.1
267
Tumor
-0.1
341
Tumor
-0.1
861
Tumor
-0.1
937
Tumor
-0.1
425
Tumor
-0.1
553
Tumor
-0.1
737
Tumor
-0.1
715
Tumor
-0.1
221
Tumor
-0.2
473
Tumor
-0.2
851
Tumor
-0.2
685
Tumor
-0.2
384
Normal
-0.2
1021
Tumor
-0.2
231
Tumor
-0.2
433
Tumor
-0.2
617
Tumor
-0.2
124
Normal
-0.2
171
Tumor
-0.2
567
Tumor
-0.2
444
Normal
-0.2
431
Tumor
-0.2
387
Tumor
-0.2
355
Tumor
-0.3
493
Tumor
-0.3
1015
Tumor
-0.3
191
Tumor
-0.3
192
Normal
-0.3
533
Tumor
-0.3
391
Tumor
-0.3
187
Tumor
-0.3
161
Tumor
-0.3
447
Tumor
-0.3
663
Tumor
-0.3
977
Tumor
-0.3
883
Tumor
-0.3
983
Tumor
-0.3
195
Tumor
-0.3
421
Tumor
-0.3
641
Tumor
-0.4
297
Tumor
-0.4
357
Tumor
-0.4
217
Tumor
-0.4
743
Tumor
-0.4
455
Tumor
-0.4
814
Normal
-0.4
963
Tumor
-0.4
913
Tumor
-0.4
112
Tumor
-0.4
127
Tumor
-0.4
223
Tumor
-0.4
135
Tumor
-0.4
313
Tumor
-0.4
271
Tumor
-0.4
535
Tumor
-0.4
813
Tumor
-0.4
647
Tumor
-0.5
471
Tumor
-0.5
285
Tumor
-0.5
351
Tumor
-0.5
435
Tumor
-0.5
141
Tumor
-0.5
917
Tumor
-0.5
497
Tumor
-0.5
213
Tumor
-0.5
975
Tumor
-0.5
573
Tumor
-0.5
125
Tumor
-0.5
665
Tumor
-0.6
943
Tumor
-0.6
463
Tumor
-0.6
881
Tumor
-0.6
865
Tumor
-0.6
147
Tumor
-0.6
185
Tumor
-0.6
817
Tumor
-0.6
413
Tumor
-0.6
445
Tumor
-0.6
383
Tumor
-0.7
211
Tumor
-0.7
385
Tumor
-0.7
467
Tumor
-0.7
724
Normal
-0.7
375
Tumor
-0.7
367
Tumor
-0.7
877
Tumor
-0.8
395
Tumor
-0.8
131
Tumor
-0.8
965
Tumor
-0.8
671
Tumor
-0.8
331
Tumor
-0.8
277
Tumor
-0.8
311
Tumor
-1.0
123
Tumor
-1.0
343
Tumor
-1.0
661
Tumor
-1.0
283
Tumor
-1.1
545
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.