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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TPM4 is potential prognostic, high expression is unfavorable in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
350.3
Number of samples
349
Samples
Sample
Description
TPM
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
2053.3
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
1592.1
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
1484.0
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
1423.0
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
1390.6
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
1153.3
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
1116.1
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
1019.3
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
949.6
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
881.5
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
824.7
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
822.7
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
804.9
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
801.8
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
779.6
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
778.7
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
778.1
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
772.9
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
759.9
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
739.8
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
720.0
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
719.4
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
707.7
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
687.9
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
681.7
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
672.5
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
658.0
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
615.7
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
615.1
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
613.7
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
612.0
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
611.4
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
592.0
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
591.3
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
580.7
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
579.2
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
577.5
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
574.0
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
572.5
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
565.1
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
564.3
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
561.1
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
556.7
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
553.8
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
552.8
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
551.1
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
548.9
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
548.1
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
546.7
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
546.4
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
546.1
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
543.9
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
540.2
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
535.5
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
532.4
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
531.9
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
527.6
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
527.4
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
521.3
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
504.1
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
502.5
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
501.2
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
497.1
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
494.2
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
488.1
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
486.3
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
483.0
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
480.6
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
478.4
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
474.2
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
472.2
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
470.8
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
468.0
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
467.9
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
466.0
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
463.3
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
462.2
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
462.0
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
460.9
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
459.9
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
456.3
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
455.1
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
446.5
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
443.6
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
442.8
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
437.6
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
437.0
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
432.8
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
430.8
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
429.7
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
422.5
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
422.0
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
417.5
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
417.1
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
414.3
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
412.3
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
411.3
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
410.5
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
410.4
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
408.3
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
404.2
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
403.5
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
403.1
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
398.7
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
395.2
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
394.7
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
394.3
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
393.5
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
386.5
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
382.5
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
381.5
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
380.2
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
379.1
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
377.1
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
375.3
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
374.7
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
373.6
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
373.4
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
373.4
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
373.3
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
372.0
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
371.7
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
370.4
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
370.2
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
367.1
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
367.0
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
362.4
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
361.1
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
360.2
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
359.8
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
359.1
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
358.4
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
358.0
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
357.9
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
353.1
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
348.4
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
348.1
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
347.0
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
346.1
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
345.8
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
345.3
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
344.6
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
344.4
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
342.8
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
342.3
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
341.6
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
340.3
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
340.3
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
339.6
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
338.5
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
335.8
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
334.4
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
333.3
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
332.6
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
331.3
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
331.0
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
330.4
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
330.4
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
327.7
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
327.6
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
327.1
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
326.6
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
324.2
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
323.1
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
320.9
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
319.5
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
319.1
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
319.0
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
317.5
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
317.3
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
315.6
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
315.2
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
311.7
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
311.4
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
311.0
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
310.9
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
310.7
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
309.8
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
309.0
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
308.7
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
307.8
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
306.6
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
303.5
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
303.2
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
301.5
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
301.2
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
301.0
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
300.6
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
300.5
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
300.1
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
298.4
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
298.3
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
295.8
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
295.1
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
293.4
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
289.9
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
289.5
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
289.2
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
287.8
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
287.6
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
286.7
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
285.7
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
284.2
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
279.8
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
279.4
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
276.3
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
276.2
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
276.2
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
274.2
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
273.4
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
271.8
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
268.0
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
267.5
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
265.6
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
263.8
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
262.2
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
259.2
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
258.9
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
255.9
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
255.4
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
254.1
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
253.8
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
253.7
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
252.7
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
252.1
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
249.2
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
246.5
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
244.8
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
244.1
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
244.1
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
243.8
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
241.8
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
239.5
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
238.7
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
238.4
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
232.0
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
231.1
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
224.6
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
222.6
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
222.4
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
221.4
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
219.1
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
216.0
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
215.6
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
215.6
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
214.9
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
213.8
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
210.0
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
207.4
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
206.5
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
206.3
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
206.2
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
206.0
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
201.8
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
200.0
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
196.5
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
194.2
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
192.9
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
191.1
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
189.2
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
185.2
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
184.3
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
183.5
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
183.3
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
183.2
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
182.7
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
180.3
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
180.2
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
179.8
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
179.6
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
175.6
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
173.4
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
173.2
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
171.8
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
171.7
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
171.2
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
169.5
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
168.7
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
163.6
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
162.2
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
161.5
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
160.9
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
159.5
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
158.3
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
155.3
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
155.2
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
154.2
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
153.4
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
153.0
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
152.1
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
152.0
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
152.0
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
151.0
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
149.3
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
148.4
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
147.7
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
147.4
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
143.9
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
143.6
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
142.9
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
142.3
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
141.6
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
140.8
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
139.8
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
137.1
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
135.0
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
133.6
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
132.1
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
128.8
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
128.1
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
127.0
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
123.8
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
122.7
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
122.0
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
121.4
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
120.9
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
120.9
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
118.5
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
118.4
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
116.6
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
113.4
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
113.0
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
109.1
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
108.5
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
105.4
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
104.9
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
102.7
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
101.2
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
100.4
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
93.8
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
93.3
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
92.9
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
92.7
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
91.9
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
91.9
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
91.3
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
90.6
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
86.4
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
81.4
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
77.8
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
77.1
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
73.2
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
61.9
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
61.2
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
47.4
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
44.4
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
42.2
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
40.7
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TPM4 is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
516.2
Number of samples
81
Samples
Sample
Description
TPM
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
1773.8
DO46325
0 years, female, NA, stage:III, dead, 477 days
1283.7
DO46568
0 years, female, NA, stage:III, dead, 320 days
1194.8
DO46448
0 years, female, NA, stage:III, dead, 654 days
1115.6
DO46436
0 years, female, NA, stage:III, alive, 3193 days
1073.8
DO46327
0 years, female, NA, stage:III, dead, 184 days
1056.3
DO46392
0 years, female, NA, stage:III, dead, 628 days
1056.2
DO46508
0 years, female, NA, stage:III, dead, 2101 days
988.3
DO46533
0 years, female, NA, stage:III, alive, 3667 days
948.9
DO46374
0 years, female, NA, stage:III, dead, 1409 days
905.5
DO46611
0 years, female, NA, stage:III, dead, 734 days
892.1
DO46344
0 years, female, NA, stage:III, dead, 642 days
870.0
DO46332
0 years, female, NA, stage:III, dead, 689 days
837.3
DO46382
0 years, female, NA, stage:IV, dead, 311 days
825.0
DO46326
0 years, female, NA, stage:III, dead, 701 days
784.9
DO46328
0 years, female, NA, stage:III, dead, 972 days
779.9
DO46354
0 years, female, NA, stage:III, dead, 843 days
741.7
DO46396
0 years, female, NA, stage:III, dead, 583 days
695.2
DO46388
0 years, female, NA, stage:III, dead, 413 days
675.9
DO46560
0 years, female, NA, stage:IV, dead, 286 days
645.0
DO46348
0 years, female, NA, stage:IV, dead, 287 days
625.6
DO46432
0 years, female, NA, stage:III, alive, 2218 days
611.4
DO46346
0 years, female, NA, stage:III, dead, 1187 days
607.2
DO46340
0 years, female, NA, stage:III, dead, 616 days
570.5
DO46463
0 years, female, NA, stage:III, dead, 2451 days
569.4
DO46386
0 years, female, NA, stage:III, dead, 1162 days
558.8
DO46352
0 years, female, NA, stage:III, dead, 677 days
558.0
DO46581
0 years, female, NA, stage:III, dead, 408 days
551.0
DO46376
0 years, female, NA, stage:III, dead, 1430 days
549.9
DO46330
0 years, female, NA, stage:III, dead, 684 days
534.2
DO46364
0 years, female, NA, stage:III, dead, 806 days
531.1
DO46538
0 years, female, NA, stage:III, dead, 1527 days
517.9
DO46606
0 years, female, NA, stage:III, alive, 804 days
504.2
DO46402
0 years, female, NA, stage:III, dead, 511 days
501.0
DO46338
0 years, female, NA, stage:III, dead, 596 days
497.3
DO46551
0 years, female, NA, stage:III, dead, 1055 days
496.2
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
492.0
DO46329
0 years, female, NA, stage:III, dead, 1699 days
482.8
DO46408
0 years, female, NA, stage:III, dead, 489 days
477.0
DO46398
0 years, female, NA, stage:III, alive, 437 days
465.7
DO46384
0 years, female, NA, stage:III, dead, 614 days
463.2
DO46368
0 years, female, NA, stage:III, dead, 2879 days
453.7
DO46443
0 years, female, NA, stage:III, dead, 2464 days
452.9
DO46566
0 years, female, NA, stage:III, dead, 673 days
452.5
DO46334
0 years, female, NA, stage:III, dead, 496 days
447.2
DO46597
0 years, female, NA, stage:III, dead, 393 days
446.5
DO46336
0 years, female, NA, stage:IV, dead, 664 days
420.9
DO46380
0 years, female, NA, stage:III, dead, 1423 days
417.6
DO46571
0 years, female, NA, stage:III, dead, 243 days
410.8
DO46412
0 years, female, NA, stage:III, dead, 597 days
410.2
DO46404
0 years, female, NA, stage:III, dead, 690 days
405.6
DO46358
0 years, female, NA, stage:III, dead, 423 days
391.2
DO46378
0 years, female, NA, stage:III, alive, 843 days
378.2
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
377.0
DO46372
0 years, female, NA, stage:III, dead, 1326 days
369.7
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
354.6
DO46561
0 years, female, NA, stage:III, dead, 195 days
351.3
DO46370
0 years, female, NA, stage:III, dead, 1727 days
345.3
DO46528
0 years, female, NA, stage:III, alive, 6139 days
342.4
DO46342
0 years, female, NA, stage:III, dead, 1398 days
341.3
DO46350
0 years, female, NA, stage:III, dead, 886 days
305.1
DO46362
0 years, female, NA, stage:III, dead, 1639 days
274.3
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
266.5
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
259.7
DO46602
0 years, female, NA, stage:III, dead, 205 days
254.6
DO46546
0 years, female, NA, stage:III, dead, 1889 days
254.6
DO46493
0 years, female, NA, stage:IV, alive, 839 days
244.2
DO46331
0 years, female, NA, stage:III, dead, 612 days
226.6
DO46400
0 years, female, NA, stage:III, dead, 719 days
215.1
DO46356
0 years, female, NA, stage:III, dead, 911 days
214.3
DO46468
0 years, female, NA, stage:III, alive, 2776 days
204.3
DO46588
0 years, female, NA, stage:III, dead, 438 days
201.2
DO46453
0 years, female, NA, stage:III, dead, 3294 days
182.3
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
178.5
DO46518
0 years, female, NA, stage:III, alive, 2960 days
141.4
DO46390
0 years, female, NA, stage:III, dead, 374 days
125.6
DO46591
0 years, female, NA, stage:III, dead, 195 days
105.4
DO46586
0 years, female, NA, stage:III, dead, 1019 days
89.0
DO46576
0 years, female, NA, stage:III, alive, 133 days
70.9
DO46333
0 years, female, NA, stage:III, dead, 359 days
67.9
DO46366
0 years, female, NA, stage:III, dead, 2054 days
54.0
Show allShow less
OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
0.2
340a3769-3031-41ae-bb08-a2f696_D2
Normal
-0.1
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
-0.2
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
-0.3
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
-0.4
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
-0.4
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
-0.4
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
-0.5
15524912-685a-47ce-a824-567848_D2
Tumor
-0.5
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
-0.5
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
-0.5
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
-0.5
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
-0.5
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
-0.6
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
-0.6
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
-0.6
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
-0.6
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
-0.6
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
-0.6
a3a26070-fb84-406a-8280-d555e6_D2
Normal
-0.7
285fed94-1495-448e-879b-b55de9_D2
Tumor
-0.8
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
-0.8
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
-0.8
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
-0.9
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
-0.9
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
-0.9
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
-1.0
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
-1.0
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
-1.1
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
-1.1
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
-1.1
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
-1.1
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
-1.1
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
-1.1
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
-1.2
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
-1.2
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
-1.2
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
-1.2
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
-1.2
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
-1.3
e9d416e7-f661-400a-896e-388545_D2
Tumor
-1.3
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
-1.3
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
-1.3
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
-1.3
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
-1.3
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
-1.3
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
-1.3
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
-1.4
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
-1.4
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
-1.4
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
-1.4
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
-1.5
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
-1.5
1772e913-f62e-446a-8cf3-720348_D2
Tumor
-1.5
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
-1.6
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
-1.6
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
-1.6
a65d8e76-640f-4341-a561-afbb57_D2
Normal
-1.6
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
-1.6
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
-1.7
21efd60f-6a31-4b98-9477-16a905_D2
Normal
-1.7
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
-1.7
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
-1.7
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
-1.7
2f901c90-617e-46da-9fac-d68369_D2
Tumor
-1.7
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
-1.7
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
-1.7
10c2d629-0287-4511-ac25-f29031_D2
Tumor
-1.7
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
-1.7
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
-1.8
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
-1.8
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
-1.8
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
-1.8
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
-1.8
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
-1.8
1a10c200-3895-4648-b951-94f99f_D2
Tumor
-1.8
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
-1.8
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
-1.9
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
-1.9
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
-1.9
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
-1.9
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
-1.9
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
-1.9
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
-1.9
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
-1.9
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
-2.1
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
-2.1
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
-2.1
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
-2.1
161317f3-1a39-438e-af45-cd2502_D2
Tumor
-2.1
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
-2.1
1db5574d-aca7-403c-8100-6e705f_D2
Normal
-2.2
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
-2.2
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
-2.2
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
-2.2
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
-2.2
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
-2.3
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
-2.3
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
-2.3
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
-2.3
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
-2.3
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
-2.4
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
-2.4
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
-2.4
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
-2.4
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
-2.5
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
-2.8
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
-2.8
Show allShow less
OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.