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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TPM4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
473.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
445.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
392.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
309.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
279.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
276.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
237.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
206.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
186.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
179.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
176.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
172.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
169.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
156.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
153.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
151.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
146.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
143.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
143.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
126.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
125.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
125.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
124.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
123.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
120.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
119.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
119.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
115.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
115.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
114.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
114.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
114.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
111.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
105.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
105.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
105.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
102.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
98.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
94.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
91.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
89.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
88.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
88.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
88.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
86.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
84.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
83.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
80.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
79.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
79.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
78.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
76.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
75.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
75.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
73.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
72.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
72.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
71.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
66.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
63.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
63.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
59.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
59.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
58.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
58.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
58.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
58.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
58.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
57.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
57.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
56.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
56.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
54.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
54.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
54.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
53.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
53.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
53.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
52.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
51.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
51.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
50.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
49.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
49.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
49.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
48.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
48.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
47.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
46.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
45.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
45.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
45.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
45.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
44.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
44.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
43.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
43.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
43.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
42.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
42.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
42.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
42.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
41.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
41.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
40.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
40.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
40.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
39.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
39.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
39.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
39.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
39.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
38.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
38.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
38.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
38.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
38.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
37.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
37.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
37.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
37.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
37.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
35.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
35.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
35.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
33.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
33.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
33.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
32.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
32.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
31.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
30.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
30.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
30.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
29.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
28.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
28.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
27.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
27.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
26.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
26.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
26.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
22.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TPM4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
87.1
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
500.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
493.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
482.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
469.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
464.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
384.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
364.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
361.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
355.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
354.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
271.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
262.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
258.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
251.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
246.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
243.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
239.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
236.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
233.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
233.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
232.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
224.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
221.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
214.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
207.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
187.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
180.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
176.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
174.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
170.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
169.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
169.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
162.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
162.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
161.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
156.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
155.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
151.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
149.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
147.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
142.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
142.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
138.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
133.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
132.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
124.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
124.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
123.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
122.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
122.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
120.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
119.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
113.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
110.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
110.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
106.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
106.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
105.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
104.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
98.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
97.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
97.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
96.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
94.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
91.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
89.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
88.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
88.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
88.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
88.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
88.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
84.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
84.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
83.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
83.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
81.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
80.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
77.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
76.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
76.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
75.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
75.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
75.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
73.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
72.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
70.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
70.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
68.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
68.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
68.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
67.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
67.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
64.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
63.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
63.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
61.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
61.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
60.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
60.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
60.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
60.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
59.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
59.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
59.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
59.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
58.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
57.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
57.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
57.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
56.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
55.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
55.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
55.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
55.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
54.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
54.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
53.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
53.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
53.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
53.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
53.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
53.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
52.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
52.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
51.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
50.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
49.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
49.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
47.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
46.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
45.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
45.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
44.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
44.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
44.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
43.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
42.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
41.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
41.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
41.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
40.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
40.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
40.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
40.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
39.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
39.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
39.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
39.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
38.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
38.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
38.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
38.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
37.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
37.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
35.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
35.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
35.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
33.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
33.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
32.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
31.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
31.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
31.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
30.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
29.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
28.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
27.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
26.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
23.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
536
Normal
1.5
917
Tumor
1.4
498
Normal
1.2
192
Normal
1.2
545
Tumor
1.2
478
Normal
1.2
538
Normal
1.1
916
Normal
1.1
492
Normal
1.1
311
Tumor
1.0
958
Normal
1.0
211
Tumor
1.0
823
Tumor
1.0
444
Normal
0.9
881
Tumor
0.9
223
Tumor
0.9
817
Tumor
0.9
852
Normal
0.9
185
Tumor
0.8
943
Tumor
0.8
524
Normal
0.8
421
Tumor
0.8
975
Tumor
0.8
525
Tumor
0.8
982
Normal
0.7
672
Normal
0.7
563
Tumor
0.7
516
Normal
0.7
355
Tumor
0.7
455
Tumor
0.7
535
Tumor
0.7
297
Tumor
0.7
415
Tumor
0.7
697
Tumor
0.6
224
Normal
0.6
375
Tumor
0.6
1028
Normal
0.6
447
Tumor
0.6
448
Normal
0.6
976
Normal
0.6
963
Tumor
0.5
874
Normal
0.5
483
Tumor
0.5
857
Tumor
0.5
984
Normal
0.5
364
Normal
0.5
434
Normal
0.5
716
Normal
0.5
386
Normal
0.5
514
Normal
0.5
785
Tumor
0.5
344
Normal
0.5
124
Normal
0.5
212
Normal
0.4
1045
Tumor
0.4
924
Normal
0.4
493
Tumor
0.4
283
Tumor
0.4
816
Normal
0.4
572
Normal
0.4
412
Normal
0.4
1044
Normal
0.4
461
Tumor
0.4
686
Normal
0.4
126
Normal
0.4
146
Normal
0.4
968
Normal
0.4
1032
Normal
0.4
268
Normal
0.4
213
Tumor
0.4
814
Normal
0.3
427
Tumor
0.3
715
Tumor
0.3
952
Normal
0.3
866
Normal
0.3
528
Normal
0.3
188
Normal
0.3
363
Tumor
0.3
721
Tumor
0.3
354
Normal
0.3
661
Tumor
0.3
923
Tumor
0.3
978
Normal
0.3
878
Normal
0.3
967
Tumor
0.3
954
Normal
0.3
284
Normal
0.3
883
Tumor
0.3
384
Normal
0.3
546
Normal
0.3
918
Normal
0.3
474
Normal
0.3
228
Normal
0.3
553
Tumor
0.3
383
Tumor
0.3
744
Normal
0.3
921
Tumor
0.2
882
Normal
0.2
214
Normal
0.2
913
Tumor
0.2
488
Normal
0.2
671
Tumor
0.2
195
Tumor
0.2
698
Normal
0.2
938
Normal
0.2
922
Normal
0.2
312
Normal
0.2
778
Normal
0.2
385
Tumor
0.2
471
Tumor
0.2
343
Tumor
0.2
394
Normal
0.2
786
Normal
0.2
554
Normal
0.2
884
Normal
0.2
813
Tumor
0.2
191
Tumor
0.2
467
Tumor
0.2
187
Tumor
0.2
472
Normal
0.2
818
Normal
0.2
966
Normal
0.2
558
Normal
0.2
368
Normal
0.1
1015
Tumor
0.1
491
Tumor
0.1
494
Normal
0.1
713
Tumor
0.1
142
Normal
0.1
723
Tumor
0.1
277
Tumor
0.1
416
Normal
0.1
138
Normal
0.1
327
Tumor
0.1
868
Normal
0.1
696
Normal
0.1
944
Normal
0.1
362
Normal
0.1
574
Normal
0.1
956
Normal
0.1
141
Tumor
0.1
666
Normal
0.1
1022
Normal
0.1
332
Normal
0.1
328
Normal
0.1
137
Tumor
0.1
642
Normal
0.1
527
Tumor
0.1
526
Normal
0.1
484
Normal
0.1
636
Normal
0.0
145
Tumor
0.0
395
Tumor
0.0
352
Normal
0.0
641
Tumor
0.0
388
Normal
0.0
662
Normal
0.0
161
Tumor
0.0
218
Normal
0.0
136
Normal
0.0
433
Tumor
0.0
867
Tumor
0.0
422
Normal
0.0
1042
Normal
0.0
473
Tumor
0.0
714
Normal
0.0
468
Normal
0.0
396
Normal
0.0
331
Tumor
0.0
534
Normal
0.0
413
Tumor
0.0
738
Normal
0.0
518
Normal
0.0
722
Normal
0.0
392
Normal
0.0
376
Normal
-0.1
1014
Normal
-0.1
964
Normal
-0.1
497
Tumor
-0.1
272
Normal
-0.1
366
Normal
-0.1
314
Normal
-0.1
456
Normal
-0.1
728
Normal
-0.1
515
Tumor
-0.1
262
Normal
-0.1
356
Normal
-0.1
342
Normal
-0.1
925
Tumor
-0.1
864
Normal
-0.1
926
Normal
-0.1
628
Normal
-0.1
983
Tumor
-0.1
664
Normal
-0.1
1031
Tumor
-0.1
278
Normal
-0.1
617
Tumor
-0.1
724
Normal
-0.1
756
Normal
-0.1
298
Normal
-0.1
217
Tumor
-0.1
462
Normal
-0.2
824
Normal
-0.2
286
Normal
-0.2
1026
Normal
-0.2
464
Normal
-0.2
568
Normal
-0.2
482
Normal
-0.2
365
Tumor
-0.2
162
Normal
-0.2
627
Tumor
-0.2
742
Normal
-0.2
1016
Normal
-0.2
951
Tumor
-0.2
148
Normal
-0.2
424
Normal
-0.2
912
Normal
-0.2
862
Normal
-0.2
172
Normal
-0.2
135
Tumor
-0.2
432
Normal
-0.2
466
Normal
-0.2
861
Tumor
-0.2
232
Normal
-0.2
914
Normal
-0.2
426
Normal
-0.3
616
Normal
-0.3
618
Normal
-0.3
227
Tumor
-0.3
746
Normal
-0.3
111
Normal
-0.3
463
Tumor
-0.3
367
Tumor
-0.3
186
Normal
-0.3
863
Tumor
-0.3
513
Tumor
-0.3
196
Normal
-0.3
258
Normal
-0.3
615
Tumor
-0.3
564
Normal
-0.3
446
Normal
-0.3
414
Normal
-0.3
953
Tumor
-0.3
955
Tumor
-0.3
271
Tumor
-0.3
743
Tumor
-0.4
222
Normal
-0.4
858
Normal
-0.4
387
Tumor
-0.4
452
Normal
-0.4
391
Tumor
-0.4
361
Tumor
-0.4
1046
Normal
-0.4
873
Tumor
-0.4
114
Normal
-0.4
648
Normal
-0.4
132
Normal
-0.4
428
Normal
-0.4
341
Tumor
-0.4
221
Tumor
-0.4
665
Tumor
-0.4
557
Tumor
-0.5
537
Tumor
-0.5
965
Tumor
-0.5
977
Tumor
-0.5
423
Tumor
-0.5
1013
Tumor
-0.5
737
Tumor
-0.5
131
Tumor
-0.5
877
Tumor
-0.5
285
Tumor
-0.5
128
Normal
-0.5
533
Tumor
-0.5
353
Tumor
-0.5
937
Tumor
-0.5
567
Tumor
-0.5
358
Normal
-0.5
481
Tumor
-0.6
957
Tumor
-0.6
851
Tumor
-0.6
1025
Tumor
-0.6
436
Normal
-0.6
1043
Tumor
-0.6
685
Tumor
-0.6
573
Tumor
-0.6
777
Tumor
-0.6
477
Tumor
-0.6
517
Tumor
-0.6
981
Tumor
-0.6
727
Tumor
-0.6
125
Tumor
-0.7
915
Tumor
-0.7
695
Tumor
-0.7
261
Tumor
-0.7
647
Tumor
-0.7
663
Tumor
-0.7
351
Tumor
-0.7
523
Tumor
-0.7
411
Tumor
-0.7
231
Tumor
-0.7
865
Tumor
-0.7
393
Tumor
-0.7
755
Tumor
-0.8
571
Tumor
-0.8
313
Tumor
-0.8
451
Tumor
-0.8
113
Tumor
-0.8
745
Tumor
-0.8
815
Tumor
-0.9
431
Tumor
-0.9
127
Tumor
-0.9
635
Tumor
-0.9
1021
Tumor
-0.9
1041
Tumor
-0.9
911
Tumor
-0.9
147
Tumor
-0.9
425
Tumor
-0.9
1027
Tumor
-0.9
741
Tumor
-1.0
445
Tumor
-1.0
465
Tumor
-1.0
443
Tumor
-1.0
357
Tumor
-1.0
171
Tumor
-1.1
435
Tumor
-1.1
123
Tumor
-1.1
257
Tumor
-1.1
267
Tumor
-1.2
487
Tumor
-1.3
112
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
