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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:133.4 nTPM
HPA Brain:185.0 nTPM
GTEx:133.4 nTPM
FANTOM5:279.2 Scaled Tags Per Million
Pig:340.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

185.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 145.4
2816 Male, age 47, midline 157.1
1981 Female, age 72, midline 154.5
2048 Male, age 55, midline 144.7
2565 Male, age 75, midline 137.9
2194 Female, age 79, both hemispheres 132.8
Cervical spinal cord, dorsal horn
nTPM: 185.0
2296 Male, age 66, both hemispheres 311.1
2173 Female, age 72, unknown 210.9
2069 Male, age 47, both hemispheres 170.8
1877 Male, age 55, unknown 148.4
2297 Male, age 75, both hemispheres 135.8
2721 Male, age 90, both hemispheres 133.2
Cervical spinal cord, ventral horn
nTPM: 150.1
2098 Female, age 72, unknown 183.3
2068 Male, age 55, unknown 166.6
2820 Female, age 79, both hemispheres 150.5
2480 Male, age 75, both hemispheres 148.1
2295 Male, age 66, both hemispheres 134.5
2809 Male, age 90, both hemispheres 117.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 133.4
Samples: 159

Max nTPM: 249.2
Min nTPM: 52.7
Std nTPM: 44.6
Median nTPM: 130.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 249.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 249.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 242.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 239.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 236.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 235.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 223.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 214.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 208.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 204.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 204.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 202.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 200.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 199.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 199.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 196.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 191.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 190.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 189.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 187.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 182.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 181.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 181.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 181.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 180.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 179.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 177.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 177.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 176.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 175.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 173.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 171.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 170.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 170.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 169.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 169.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 166.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 165.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 164.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 164.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 162.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 161.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 160.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 158.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 158.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 156.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 156.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 156.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 155.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 154.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 153.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 151.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 150.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 150.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 149.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 149.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 148.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 148.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 146.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 145.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 144.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 143.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 143.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 142.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 142.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 141.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 138.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 138.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 138.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 136.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 136.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 135.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 135.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 133.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 133.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 133.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 131.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 130.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 130.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 130.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 128.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 128.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 128.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 127.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 126.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 126.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 126.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 123.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 123.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 120.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 120.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 120.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 119.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 118.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 117.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 117.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 116.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 116.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 116.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 115.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 114.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 114.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 114.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 114.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 112.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 110.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 110.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 107.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 105.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 105.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 104.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 104.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 104.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 103.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 102.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 101.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 100.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 99.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 96.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 96.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 95.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 95.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 93.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 93.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 92.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 92.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 91.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 91.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 91.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 91.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 89.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 88.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 87.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 86.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 86.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 85.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 83.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 82.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 82.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 80.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 80.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 79.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 79.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 76.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 75.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 75.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 74.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 74.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 74.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 72.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 72.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 69.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 67.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 65.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 60.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 57.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 57.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 55.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 52.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

279.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 279.2
FF:10181-103D1 60 years, female 338.6
FF:10159-103A6 76 years, female 219.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

340.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 263.7
Samples: 4

Max nTPM: 306.5
Min nTPM: 197.0
Sample A Female 306.5
Sample B Female 257.7
Sample C Male 197.0
Sample D Male 293.5
Ventral spinal cord
nTPM: 340.3
Samples: 4

Max nTPM: 398.0
Min nTPM: 277.0
Sample A Female 398.0
Sample B Female 309.0
Sample C Male 277.0
Sample D Male 377.1

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