HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:56.6 nTPM
HPA Brain:91.0 nTPM
GTEx:56.6 nTPM
FANTOM5:122.0 Scaled Tags Per Million
Pig:38.6 nTPM
Mouse:35.0 nTPM
Allen mouse:4.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037709Antibody HPA044868
Glial cells LowNot detected
Neuronal cells LowMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 91.0
Sample id Sample description nTPM
Hippocampus
nTPM: 85.5
1855 Male, age 76, left hemisphere 97.0
2529 Female, age 94, left hemisphere 95.6
2148 Female, age 91, left hemisphere 84.3
2621 Female, age 67, right hemisphere 81.0
1898 Male, age 80, left hemisphere 80.4
1911 Female, age 85, right hemisphere 75.0
Dentate gyrus
nTPM: 73.9
2528 Male, age 74, both hemispheres 88.6
2010 Male, age 76, both hemispheres 82.8
2246 Female, age 85, both hemispheres 78.3
2530 Female, age 94, left hemisphere 76.2
1927 Female, age 91, both hemispheres 64.9
2531 Female, age 67, both hemispheres 52.5
Entorhinal gyrus
nTPM: 78.9
2117 Female, age 91, right hemisphere 119.4
1787 Male, age 76, left hemisphere 85.0
1938 Female, age 85, left hemisphere 79.6
2764 Male, age 80, right hemisphere 75.3
2613 Female, age 94, left hemisphere 62.2
2686 Male, age 75, right hemisphere 52.1
Hippocampus, CA1
nTPM: 78.6
2527 Male, age 74, both hemispheres 101.0
2045 Male, age 76, both hemispheres 78.6
1873 Female, age 85, both hemispheres 76.9
2082 Female, age 91, right hemisphere 75.7
2749 Male, age 80, left hemisphere 61.0
Hippocampus, CA2
nTPM: 79.7
2249 Male, age 74, both hemispheres 92.3
2113 Female, age 91, right hemisphere 88.8
1940 Female, age 85, left hemisphere 84.6
2437 Female, age 94, left hemisphere 77.4
1892 Male, age 76, both hemispheres 72.7
1963 Male, age 80, left hemisphere 62.7
Hippocampus, CA3
nTPM: 79.2
2436 Male, age 74, both hemispheres 124.5
1867 Male, age 76, both hemispheres 81.6
1891 Female, age 85, both hemispheres 80.4
2620 Female, age 94, left hemisphere 80.2
2137 Male, age 80, left hemisphere 62.4
2861 Female, age 67, both hemispheres 46.2
Parahippocampal cortex
nTPM: 84.1
2250 Female, age 67, right hemisphere 96.1
2692 Male, age 74, both hemispheres 92.9
2018 Male, age 76, both hemispheres 90.5
2245 Female, age 91, both hemispheres 86.5
1990 Female, age 91, right hemisphere 82.2
1850 Male, age 80, both hemispheres 81.7
2622 Female, age 67, right hemisphere 80.6
1933 Female, age 85, both hemispheres 79.8
2532 Female, age 72, left hemisphere 77.1
2693 Female, age 94, both hemispheres 73.2
Perirhinal gyrus
nTPM: 78.5
1847 Female, age 91, left hemisphere 85.9
1794 Male, age 80, right hemisphere 82.9
1841 Female, age 85, right hemisphere 78.1
2521 Female, age 94, right hemisphere 75.6
2848 Male, age 76, right hemisphere 70.1
Subiculum
nTPM: 91.0
2619 Male, age 74, both hemispheres 116.1
2042 Male, age 76, both hemispheres 103.8
2729 Female, age 91, right hemisphere 92.0
1901 Male, age 80, both hemispheres 83.0
1977 Female, age 85, both hemispheres 76.5
2438 Female, age 94, left hemisphere 74.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 56.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 56.6
Samples: 197

Max nTPM: 106.7
Min nTPM: 25.3
Std nTPM: 15.7
Median nTPM: 53.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 106.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 102.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 102.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 101.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 100.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 98.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 97.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 94.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 88.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 88.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 86.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 122.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 122.0
FF:10153-102I9 76 years, female 122.5
FF:10169-103B7 60 years, female 121.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 38.6
Pig sample Sample description nTPM
Subiculum
nTPM: 38.6
Samples: 4

Max nTPM: 44.1
Min nTPM: 35.4
Sample A Female 44.1
Sample B Female 35.4
Sample C Male 37.5
Sample D Male 37.5
Dorsal hippocampus
nTPM: 37.5
Samples: 4

Max nTPM: 45.4
Min nTPM: 30.8
Sample A Female 45.4
Sample B Female 34.5
Sample C Male 39.1
Sample D Male 30.8
Entorhinal cortex
nTPM: 35.5
Samples: 4

Max nTPM: 40.8
Min nTPM: 30.7
Sample A Female 40.8
Sample B Female 30.7
Sample C Male 36.3
Sample D Male 34.0
Ventral hippocampus
nTPM: 37.9
Samples: 4

Max nTPM: 47.1
Min nTPM: 28.5
Sample A Female 38.6
Sample B Female 28.5
Sample C Male 47.1
Sample D Male 37.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 35.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 34.3
Samples: 4

Max nTPM: 35.3
Min nTPM: 31.7
Sample A Male 35.1
Sample B Male 31.7
Sample C Female 35.2
Sample D Female 35.3
Hippocampal formation
nTPM: 35.0
Samples: 4

Max nTPM: 38.0
Min nTPM: 29.8
Sample A Male 29.8
Sample B Male 34.6
Sample C Female 37.5
Sample D Female 38.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 4.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.4
68148756 Antisense, RP_041116_02_B11, Mouse strain C57BL/6J (56 days, male) 4.4

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