MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.3 nTPM
HPA Brain:118.3 nTPM
GTEx:71.3 nTPM
FANTOM5:138.0 Scaled Tags Per Million
Pig:53.4 nTPM
Mouse:38.2 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 118.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.6
1833 Male, age 53, unknown 106.9
1870 Female, age 42, unknown 106.2
1830 Male, age 51, unknown 101.5
2411 Female, age 72, unknown 98.5
2019 Male, age 18, unknown 97.8
2828 Female, age 72, unknown 93.4
2666 Male, age 74, left hemisphere 78.8
2219 Male, age 76, both hemispheres 72.8
1827 Male, age 72, unknown 71.1
2586 Male, age 75, left hemisphere 69.4
Dorsal raphe nucleus
nTPM: 97.8
1828 Male, age 53, unknown 105.9
2750 Male, age 76, both hemispheres 102.6
2047 Male, age 72, unknown 95.7
2016 Female, age 72, unknown 94.3
2298 Female, age 72, unknown 90.3
Inferior colliculus
nTPM: 84.6
1848 Female, age 42, unknown 88.1
1890 Male, age 53, unknown 84.2
2097 Female, age 72, unknown 84.0
2849 Male, age 72, unknown 82.3
Median raphe nucleus
nTPM: 118.3
2220 Male, age 76, midline 118.3
Periaquaductal grey, anterior
nTPM: 84.4
1947 Male, age 18, unknown 89.6
2502 Female, age 75, unknown 88.2
1795 Male, age 51, unknown 75.4
Periaquaductal grey, dorsal
nTPM: 87.7
2850 Male, age 76, both hemispheres 108.1
2464 Female, age 72, unknown 85.1
1831 Male, age 72, unknown 81.5
1840 Male, age 53, unknown 76.1
Periaquaductal grey, lateral
nTPM: 91.2
2140 Male, age 76, both hemispheres 98.8
2272 Male, age 74, both hemispheres 97.8
2053 Male, age 18, unknown 77.1
Pretectal area
nTPM: 90.4
2667 Female, age 75, unknown 119.5
1817 Female, age 42, unknown 104.1
2273 Male, age 74, both hemispheres 98.4
2224 Female, age 72, unknown 95.2
1815 Male, age 53, unknown 91.4
2407 Male, age 75, both hemispheres 84.8
2825 Male, age 18, unknown 84.3
2316 Male, age 76, right hemisphere 80.3
2007 Male, age 72, unknown 79.9
1816 Male, age 51, unknown 79.8
1944 Female, age 72, unknown 76.4
Red nucleus
nTPM: 109.1
1821 Female, age 72, unknown 135.8
1954 Female, age 42, unknown 127.5
1904 Male, age 53, unknown 122.8
1865 Male, age 51, unknown 121.3
2769 Male, age 72, unknown 117.9
2227 Male, age 72, unknown 115.1
2503 Female, age 72, unknown 114.8
2823 Male, age 76, right hemisphere 114.0
2785 Male, age 18, unknown 98.6
2725 Female, age 75, unknown 92.7
2588 Male, age 74, left hemisphere 76.7
2584 Male, age 75, left hemisphere 72.5
Substantia nigra
nTPM: 112.8
1916 Female, age 42, unknown 156.4
2699 Male, age 18, unknown 148.7
1851 Male, age 51, unknown 127.3
2409 Female, age 72, unknown 124.4
2241 Male, age 72, unknown 122.5
1941 Male, age 53, unknown 101.7
1889 Female, age 72, unknown 100.2
2590 Female, age 75, unknown 87.0
2583 Male, age 75, right hemisphere 80.9
2665 Male, age 74, both hemispheres 78.5
Superior colliculus
nTPM: 85.0
1995 Male, age 72, unknown 100.0
1913 Female, age 42, unknown 99.7
2587 Male, age 74, left hemisphere 95.1
2668 Female, age 75, unknown 88.1
1839 Male, age 51, unknown 86.2
2087 Female, age 72, unknown 84.1
1796 Male, age 53, unknown 76.5
1895 Male, age 76, right hemisphere 75.0
2664 Male, age 75, both hemispheres 73.2
2261 Male, age 18, unknown 71.9
Ventral tegmental area
nTPM: 107.5
2410 Female, age 72, unknown 120.5
1915 Female, age 42, unknown 119.4
2218 Male, age 76, both hemispheres 112.0
2223 Female, age 72, unknown 110.9
2021 Male, age 53, unknown 95.3
1942 Male, age 51, unknown 87.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 71.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.3
Samples: 139

Max nTPM: 149.1
Min nTPM: 37.7
Std nTPM: 19.6
Median nTPM: 66.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 149.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 134.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 131.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 124.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 113.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 112.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 110.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 107.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 106.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 104.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 102.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 138.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.0
FF:10158-103A5 76 years, female 138.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 53.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.4
Samples: 4

Max nTPM: 60.1
Min nTPM: 49.3
Sample A Female 54.4
Sample B Female 49.6
Sample C Male 49.3
Sample D Male 60.1
Midbrain
nTPM: 45.9
Samples: 4

Max nTPM: 67.7
Min nTPM: 34.2
Sample A Female 67.7
Sample B Female 42.7
Sample C Male 38.9
Sample D Male 34.2
Periaqueductal gray
nTPM: 38.3
Samples: 3

Max nTPM: 40.3
Min nTPM: 37.3
Sample B Female 40.3
Sample C Male 37.4
Sample D Male 37.3
Superior colliculi
nTPM: 49.7
Samples: 4

Max nTPM: 58.6
Min nTPM: 41.1
Sample A Female 58.6
Sample B Female 49.4
Sample C Male 41.1
Sample D Male 49.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 42.4
Min nTPM: 35.7
Sample A Male 35.7
Sample B Male 36.4
Sample C Female 42.4
Sample D Female 38.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
68148756 Antisense, RP_041116_02_B11, Mouse strain C57BL/6J (56 days, male) 0.9

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