MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.7 nTPM
HPA Brain:58.1 nTPM
GTEx:24.7 nTPM
FANTOM5:96.5 Scaled Tags Per Million
Pig:88.4 nTPM
Mouse:209.6 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 58.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.6
1827 Male, age 72, unknown 54.7
2666 Male, age 74, left hemisphere 47.1
2019 Male, age 18, unknown 43.8
2828 Female, age 72, unknown 40.6
1870 Female, age 42, unknown 40.5
2411 Female, age 72, unknown 34.9
2219 Male, age 76, both hemispheres 31.9
2586 Male, age 75, left hemisphere 29.3
1830 Male, age 51, unknown 26.9
1833 Male, age 53, unknown 25.7
Dorsal raphe nucleus
nTPM: 32.8
2298 Female, age 72, unknown 39.6
1828 Male, age 53, unknown 37.4
2750 Male, age 76, both hemispheres 31.4
2047 Male, age 72, unknown 29.1
2016 Female, age 72, unknown 26.6
Inferior colliculus
nTPM: 39.7
2097 Female, age 72, unknown 58.1
1848 Female, age 42, unknown 36.9
1890 Male, age 53, unknown 35.7
2849 Male, age 72, unknown 28.2
Median raphe nucleus
nTPM: 29.3
2220 Male, age 76, midline 29.3
Periaquaductal grey, anterior
nTPM: 58.1
1947 Male, age 18, unknown 68.3
1795 Male, age 51, unknown 59.2
2502 Female, age 75, unknown 47.0
Periaquaductal grey, dorsal
nTPM: 30.3
1831 Male, age 72, unknown 35.4
2464 Female, age 72, unknown 33.2
1840 Male, age 53, unknown 26.7
2850 Male, age 76, both hemispheres 25.7
Periaquaductal grey, lateral
nTPM: 34.2
2053 Male, age 18, unknown 40.9
2272 Male, age 74, both hemispheres 36.4
2140 Male, age 76, both hemispheres 25.2
Pretectal area
nTPM: 47.3
1816 Male, age 51, unknown 77.3
1944 Female, age 72, unknown 60.0
2007 Male, age 72, unknown 55.9
1817 Female, age 42, unknown 52.3
2667 Female, age 75, unknown 49.3
2224 Female, age 72, unknown 42.0
2825 Male, age 18, unknown 41.7
2273 Male, age 74, both hemispheres 40.1
1815 Male, age 53, unknown 39.5
2407 Male, age 75, both hemispheres 31.9
2316 Male, age 76, right hemisphere 30.2
Red nucleus
nTPM: 45.0
1821 Female, age 72, unknown 69.7
1954 Female, age 42, unknown 58.4
1865 Male, age 51, unknown 51.9
2823 Male, age 76, right hemisphere 48.4
2503 Female, age 72, unknown 42.9
2725 Female, age 75, unknown 42.1
1904 Male, age 53, unknown 41.8
2227 Male, age 72, unknown 40.8
2769 Male, age 72, unknown 40.8
2785 Male, age 18, unknown 37.4
2584 Male, age 75, left hemisphere 33.3
2588 Male, age 74, left hemisphere 32.8
Substantia nigra
nTPM: 38.6
1941 Male, age 53, unknown 64.0
1889 Female, age 72, unknown 49.6
2665 Male, age 74, both hemispheres 45.1
2590 Female, age 75, unknown 38.4
2241 Male, age 72, unknown 37.0
2409 Female, age 72, unknown 34.4
2583 Male, age 75, right hemisphere 34.2
1916 Female, age 42, unknown 32.1
1851 Male, age 51, unknown 30.2
2699 Male, age 18, unknown 20.6
Superior colliculus
nTPM: 41.9
2261 Male, age 18, unknown 54.1
2087 Female, age 72, unknown 51.9
2668 Female, age 75, unknown 47.0
1895 Male, age 76, right hemisphere 45.4
1796 Male, age 53, unknown 44.4
2587 Male, age 74, left hemisphere 44.0
1913 Female, age 42, unknown 37.6
1839 Male, age 51, unknown 33.9
1995 Male, age 72, unknown 33.4
2664 Male, age 75, both hemispheres 27.3
Ventral tegmental area
nTPM: 31.8
2410 Female, age 72, unknown 35.7
1915 Female, age 42, unknown 32.7
2218 Male, age 76, both hemispheres 31.5
1942 Male, age 51, unknown 30.9
2021 Male, age 53, unknown 30.7
2223 Female, age 72, unknown 29.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.7
Samples: 139

Max nTPM: 113.8
Min nTPM: 7.0
Std nTPM: 13.1
Median nTPM: 20.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 113.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 77.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 61.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 60.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 58.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 54.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 50.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 47.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 45.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 43.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 41.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 96.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.5
FF:10158-103A5 76 years, female 96.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 88.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.8
Samples: 4

Max nTPM: 73.6
Min nTPM: 42.7
Sample A Female 73.6
Sample B Female 42.7
Sample C Male 46.6
Sample D Male 48.3
Midbrain
nTPM: 88.4
Samples: 4

Max nTPM: 154.4
Min nTPM: 49.9
Sample A Female 49.9
Sample B Female 60.1
Sample C Male 154.4
Sample D Male 89.0
Periaqueductal gray
nTPM: 51.7
Samples: 3

Max nTPM: 55.9
Min nTPM: 48.5
Sample B Female 50.8
Sample C Male 55.9
Sample D Male 48.5
Superior colliculi
nTPM: 79.2
Samples: 4

Max nTPM: 103.0
Min nTPM: 49.5
Sample A Female 83.1
Sample B Female 49.5
Sample C Male 103.0
Sample D Male 81.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 209.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 209.6
Samples: 4

Max nTPM: 221.7
Min nTPM: 200.3
Sample A Male 200.6
Sample B Male 215.6
Sample C Female 221.7
Sample D Female 200.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
69134487 Antisense, RP_050321_03_A05, Mouse strain C57BL/6J (56 days, male) 3.0
72129295 Antisense, RP_051017_03_F11, Mouse strain C57BL/6J (56 days, male) 2.4

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