MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.4 nTPM
HPA Brain:96.1 nTPM
GTEx:32.4 nTPM
FANTOM5:61.9 Scaled Tags Per Million
Pig:56.0 nTPM
Mouse:58.5 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 96.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.6
2586 Male, age 75, left hemisphere 102.8
1827 Male, age 72, unknown 88.4
2411 Female, age 72, unknown 87.6
2666 Male, age 74, left hemisphere 85.2
2828 Female, age 72, unknown 84.9
2219 Male, age 76, both hemispheres 81.7
1870 Female, age 42, unknown 77.2
1833 Male, age 53, unknown 75.4
1830 Male, age 51, unknown 73.8
2019 Male, age 18, unknown 68.9
Dorsal raphe nucleus
nTPM: 82.3
2298 Female, age 72, unknown 92.7
2047 Male, age 72, unknown 86.9
2750 Male, age 76, both hemispheres 80.1
1828 Male, age 53, unknown 79.0
2016 Female, age 72, unknown 72.5
Inferior colliculus
nTPM: 78.0
2097 Female, age 72, unknown 83.9
2849 Male, age 72, unknown 81.1
1848 Female, age 42, unknown 78.6
1890 Male, age 53, unknown 68.3
Median raphe nucleus
nTPM: 90.0
2220 Male, age 76, midline 90.0
Periaquaductal grey, anterior
nTPM: 96.1
1795 Male, age 51, unknown 98.4
1947 Male, age 18, unknown 95.4
2502 Female, age 75, unknown 94.6
Periaquaductal grey, dorsal
nTPM: 73.4
1840 Male, age 53, unknown 81.8
2464 Female, age 72, unknown 76.9
2850 Male, age 76, both hemispheres 70.8
1831 Male, age 72, unknown 64.1
Periaquaductal grey, lateral
nTPM: 76.0
2053 Male, age 18, unknown 83.2
2140 Male, age 76, both hemispheres 72.9
2272 Male, age 74, both hemispheres 72.0
Pretectal area
nTPM: 82.4
1816 Male, age 51, unknown 92.8
2825 Male, age 18, unknown 92.1
2224 Female, age 72, unknown 91.5
2007 Male, age 72, unknown 91.3
2667 Female, age 75, unknown 84.4
1944 Female, age 72, unknown 81.6
1817 Female, age 42, unknown 81.5
2407 Male, age 75, both hemispheres 77.7
1815 Male, age 53, unknown 74.8
2316 Male, age 76, right hemisphere 70.9
2273 Male, age 74, both hemispheres 67.4
Red nucleus
nTPM: 71.3
2584 Male, age 75, left hemisphere 79.8
2227 Male, age 72, unknown 76.3
2769 Male, age 72, unknown 75.7
2588 Male, age 74, left hemisphere 74.1
2785 Male, age 18, unknown 72.4
1904 Male, age 53, unknown 71.7
1821 Female, age 72, unknown 69.0
2503 Female, age 72, unknown 68.9
1954 Female, age 42, unknown 68.2
2823 Male, age 76, right hemisphere 67.8
2725 Female, age 75, unknown 67.2
1865 Male, age 51, unknown 65.0
Substantia nigra
nTPM: 80.6
1941 Male, age 53, unknown 92.2
1916 Female, age 42, unknown 88.2
2665 Male, age 74, both hemispheres 87.8
1851 Male, age 51, unknown 82.6
2583 Male, age 75, right hemisphere 81.5
1889 Female, age 72, unknown 79.0
2241 Male, age 72, unknown 77.9
2409 Female, age 72, unknown 75.8
2590 Female, age 75, unknown 73.8
2699 Male, age 18, unknown 67.1
Superior colliculus
nTPM: 81.9
1796 Male, age 53, unknown 93.3
2664 Male, age 75, both hemispheres 93.3
2261 Male, age 18, unknown 93.0
2668 Female, age 75, unknown 92.4
1839 Male, age 51, unknown 81.7
1895 Male, age 76, right hemisphere 81.3
2087 Female, age 72, unknown 79.5
2587 Male, age 74, left hemisphere 73.1
1913 Female, age 42, unknown 68.3
1995 Male, age 72, unknown 63.1
Ventral tegmental area
nTPM: 82.2
2410 Female, age 72, unknown 91.6
1942 Male, age 51, unknown 83.2
1915 Female, age 42, unknown 81.4
2218 Male, age 76, both hemispheres 81.3
2223 Female, age 72, unknown 78.0
2021 Male, age 53, unknown 77.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.4
Samples: 139

Max nTPM: 77.6
Min nTPM: 11.3
Std nTPM: 8.6
Median nTPM: 31.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 77.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 58.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 56.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 53.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 47.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 44.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 43.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 43.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 43.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 43.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 42.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 61.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.9
FF:10158-103A5 76 years, female 61.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 56.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.0
Samples: 4

Max nTPM: 55.3
Min nTPM: 40.6
Sample A Female 55.3
Sample B Female 40.6
Sample C Male 53.3
Sample D Male 46.6
Midbrain
nTPM: 56.0
Samples: 4

Max nTPM: 80.5
Min nTPM: 44.7
Sample A Female 51.6
Sample B Female 44.7
Sample C Male 80.5
Sample D Male 47.1
Periaqueductal gray
nTPM: 40.7
Samples: 3

Max nTPM: 43.6
Min nTPM: 38.8
Sample B Female 39.8
Sample C Male 43.6
Sample D Male 38.8
Superior colliculi
nTPM: 55.7
Samples: 4

Max nTPM: 72.9
Min nTPM: 46.6
Sample A Female 49.9
Sample B Female 46.6
Sample C Male 72.9
Sample D Male 53.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 58.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.5
Samples: 4

Max nTPM: 60.1
Min nTPM: 55.6
Sample A Male 58.4
Sample B Male 55.6
Sample C Female 59.9
Sample D Female 60.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
72283569 Antisense, RP_051019_01_F06, Mouse strain C57BL/6J (56 days, male) 2.9

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