MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.7 nTPM
HPA Brain:57.4 nTPM
GTEx:79.7 nTPM
FANTOM5:77.0 Scaled Tags Per Million
Pig:31.1 nTPM
Mouse:40.7 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 57.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.2
2019 Male, age 18, unknown 67.0
2586 Male, age 75, left hemisphere 66.0
1870 Female, age 42, unknown 65.0
2411 Female, age 72, unknown 61.6
1833 Male, age 53, unknown 55.8
1830 Male, age 51, unknown 53.7
2666 Male, age 74, left hemisphere 53.4
2828 Female, age 72, unknown 46.2
1827 Male, age 72, unknown 42.6
2219 Male, age 76, both hemispheres 40.8
Dorsal raphe nucleus
nTPM: 50.5
2750 Male, age 76, both hemispheres 67.6
2047 Male, age 72, unknown 53.6
1828 Male, age 53, unknown 44.0
2298 Female, age 72, unknown 44.0
2016 Female, age 72, unknown 43.3
Inferior colliculus
nTPM: 42.6
1848 Female, age 42, unknown 43.9
2097 Female, age 72, unknown 43.1
1890 Male, age 53, unknown 42.1
2849 Male, age 72, unknown 41.4
Median raphe nucleus
nTPM: 54.2
2220 Male, age 76, midline 54.2
Periaquaductal grey, anterior
nTPM: 41.2
2502 Female, age 75, unknown 44.7
1947 Male, age 18, unknown 40.0
1795 Male, age 51, unknown 39.0
Periaquaductal grey, dorsal
nTPM: 44.5
1831 Male, age 72, unknown 51.0
1840 Male, age 53, unknown 47.0
2464 Female, age 72, unknown 44.8
2850 Male, age 76, both hemispheres 35.0
Periaquaductal grey, lateral
nTPM: 35.4
2053 Male, age 18, unknown 40.3
2272 Male, age 74, both hemispheres 35.0
2140 Male, age 76, both hemispheres 30.8
Pretectal area
nTPM: 41.9
1817 Female, age 42, unknown 54.1
1815 Male, age 53, unknown 50.2
2007 Male, age 72, unknown 45.3
2407 Male, age 75, both hemispheres 44.6
2825 Male, age 18, unknown 41.2
2224 Female, age 72, unknown 39.2
1816 Male, age 51, unknown 38.9
2316 Male, age 76, right hemisphere 38.2
1944 Female, age 72, unknown 37.9
2667 Female, age 75, unknown 35.8
2273 Male, age 74, both hemispheres 35.3
Red nucleus
nTPM: 57.4
2588 Male, age 74, left hemisphere 66.5
1904 Male, age 53, unknown 65.2
1821 Female, age 72, unknown 64.2
2785 Male, age 18, unknown 62.6
2503 Female, age 72, unknown 59.5
2584 Male, age 75, left hemisphere 57.0
1865 Male, age 51, unknown 54.6
1954 Female, age 42, unknown 53.8
2227 Male, age 72, unknown 53.7
2769 Male, age 72, unknown 52.8
2725 Female, age 75, unknown 52.1
2823 Male, age 76, right hemisphere 47.2
Substantia nigra
nTPM: 50.2
1851 Male, age 51, unknown 59.4
1916 Female, age 42, unknown 55.5
2241 Male, age 72, unknown 54.3
1889 Female, age 72, unknown 53.9
2583 Male, age 75, right hemisphere 51.2
2409 Female, age 72, unknown 49.5
2665 Male, age 74, both hemispheres 47.5
2590 Female, age 75, unknown 46.5
2699 Male, age 18, unknown 44.1
1941 Male, age 53, unknown 40.0
Superior colliculus
nTPM: 46.7
2668 Female, age 75, unknown 58.1
1913 Female, age 42, unknown 53.2
2587 Male, age 74, left hemisphere 51.0
1839 Male, age 51, unknown 49.0
1995 Male, age 72, unknown 47.3
1895 Male, age 76, right hemisphere 45.9
1796 Male, age 53, unknown 45.3
2664 Male, age 75, both hemispheres 44.2
2087 Female, age 72, unknown 38.0
2261 Male, age 18, unknown 35.0
Ventral tegmental area
nTPM: 52.6
2223 Female, age 72, unknown 60.8
2410 Female, age 72, unknown 56.9
1915 Female, age 42, unknown 53.1
2021 Male, age 53, unknown 50.5
1942 Male, age 51, unknown 49.5
2218 Male, age 76, both hemispheres 44.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 79.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.7
Samples: 139

Max nTPM: 143.2
Min nTPM: 39.9
Std nTPM: 20.0
Median nTPM: 77.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 143.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 135.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 128.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 126.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 122.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 116.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 115.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 113.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 111.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 111.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 109.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 77.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.0
FF:10158-103A5 76 years, female 77.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.0
Samples: 4

Max nTPM: 38.1
Min nTPM: 22.9
Sample A Female 38.1
Sample B Female 28.1
Sample C Male 34.8
Sample D Male 22.9
Midbrain
nTPM: 29.3
Samples: 4

Max nTPM: 38.8
Min nTPM: 23.5
Sample A Female 38.8
Sample B Female 30.5
Sample C Male 24.3
Sample D Male 23.5
Periaqueductal gray
nTPM: 31.1
Samples: 3

Max nTPM: 35.3
Min nTPM: 28.2
Sample B Female 29.7
Sample C Male 35.3
Sample D Male 28.2
Superior colliculi
nTPM: 23.9
Samples: 4

Max nTPM: 27.7
Min nTPM: 21.2
Sample A Female 27.7
Sample B Female 22.0
Sample C Male 21.2
Sample D Male 24.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 40.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.7
Samples: 4

Max nTPM: 42.5
Min nTPM: 38.6
Sample A Male 38.6
Sample B Male 40.2
Sample C Female 41.5
Sample D Female 42.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
79749575 Antisense, RP_071204_02_C10, Mouse strain C57BL/6J (56 days, male) 1.5

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