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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAGLN2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
356.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2496.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1438.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1346.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1311.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1245.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1213.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1079.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1078.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1075.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1049.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1022.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
964.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
954.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
945.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
876.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
871.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
870.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
868.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
838.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
833.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
831.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
827.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
823.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
799.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
795.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
793.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
753.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
738.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
735.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
699.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
692.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
680.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
679.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
675.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
669.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
666.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
634.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
627.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
624.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
606.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
604.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
601.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
584.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
571.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
563.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
561.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
558.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
558.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
556.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
556.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
554.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
551.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
544.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
544.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
538.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
534.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
531.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
527.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
519.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
516.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
512.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
509.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
507.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
504.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
498.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
497.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
497.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
495.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
495.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
492.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
489.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
486.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
482.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
481.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
480.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
477.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
476.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
472.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
472.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
467.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
463.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
458.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
455.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
449.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
447.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
445.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
444.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
443.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
439.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
439.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
437.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
437.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
432.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
430.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
429.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
428.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
427.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
425.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
418.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
416.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
415.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
413.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
411.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
401.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
401.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
394.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
394.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
394.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
394.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
393.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
391.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
391.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
389.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
386.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
386.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
385.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
383.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
382.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
382.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
381.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
378.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
378.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
376.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
375.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
371.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
370.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
367.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
366.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
366.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
365.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
365.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
361.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
359.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
358.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
356.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
354.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
348.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
345.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
343.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
340.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
339.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
336.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
333.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
332.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
332.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
330.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
329.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
329.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
327.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
326.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
324.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
322.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
320.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
319.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
319.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
319.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
317.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
316.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
315.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
315.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
314.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
313.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
312.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
312.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
309.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
308.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
306.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
305.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
305.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
305.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
302.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
301.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
298.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
298.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
297.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
297.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
297.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
295.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
294.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
293.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
292.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
288.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
287.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
286.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
286.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
286.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
284.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
282.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
279.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
277.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
276.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
276.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
275.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
275.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
273.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
272.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
270.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
270.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
268.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
268.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
266.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
264.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
264.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
264.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
263.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
261.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
257.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
257.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
257.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
256.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
255.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
255.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
254.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
254.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
253.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
252.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
249.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
248.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
247.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
246.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
246.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
244.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
243.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
241.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
240.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
238.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
237.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
237.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
236.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
235.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
235.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
235.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
235.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
232.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
232.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
232.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
231.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
230.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
230.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
230.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
229.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
229.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
228.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
228.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
225.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
224.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
222.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
220.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
220.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
218.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
217.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
217.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
217.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
217.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
215.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
215.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
212.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
212.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
211.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
211.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
210.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
209.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
208.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
208.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
207.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
203.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
201.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
199.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
199.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
199.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
196.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
194.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
194.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
194.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
193.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
193.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
193.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
191.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
190.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
189.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
187.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
185.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
184.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
183.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
182.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
182.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
180.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
180.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
179.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
178.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
178.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
177.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
177.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
173.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
171.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
170.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
168.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
166.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
166.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
166.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
166.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
166.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
164.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
163.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
163.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
162.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
161.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
159.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
159.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
158.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
155.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
154.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
153.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
153.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
151.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
151.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
147.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
147.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
147.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
146.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
145.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
145.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
142.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
140.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
140.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
138.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
135.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
134.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
133.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
132.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
132.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
132.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
127.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
126.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
125.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
113.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
109.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
108.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
107.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
105.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
105.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
104.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
104.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
103.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
102.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
97.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
93.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
93.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
92.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
91.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
90.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
88.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
86.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
84.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
82.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
80.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
77.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
73.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
66.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
62.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
48.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAGLN2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
267.2
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2325.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
1637.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
1375.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
1222.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
767.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
754.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
654.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
631.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
586.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
578.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
578.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
572.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
550.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
549.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
529.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
522.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
509.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
508.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
507.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
506.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
505.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
487.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
484.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
476.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
475.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
463.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
462.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
461.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
455.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
452.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
441.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
440.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
437.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
425.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
420.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
416.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
409.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
404.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
403.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
389.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
383.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
383.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
383.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
377.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
376.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
375.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
370.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
369.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
365.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
356.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
349.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
349.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
348.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
339.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
338.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
333.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
326.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
324.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
323.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
321.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
321.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
320.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
318.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
317.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
315.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
313.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
310.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
307.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
306.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
301.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
300.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
299.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
294.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
294.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
288.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
285.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
283.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
278.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
277.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
275.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
274.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
267.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
267.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
266.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
262.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
259.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
258.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
255.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
255.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
254.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
252.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
252.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
249.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
245.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
243.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
243.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
241.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
240.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
236.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
235.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
234.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
234.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
232.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
229.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
229.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
229.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
228.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
227.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
225.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
224.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
223.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
220.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
215.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
215.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
211.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
209.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
205.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
203.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
201.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
201.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
195.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
195.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
192.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
191.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
190.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
190.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
190.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
189.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
186.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
186.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
183.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
182.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
180.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
179.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
179.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
178.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
178.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
177.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
176.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
176.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
176.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
175.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
174.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
172.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
172.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
172.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
171.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
169.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
168.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
167.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
167.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
167.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
167.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
166.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
163.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
162.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
160.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
159.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
157.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
157.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
156.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
154.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
153.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
151.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
150.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
149.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
149.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
149.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
148.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
146.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
144.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
144.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
143.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
143.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
142.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
140.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
138.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
135.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
134.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
133.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
130.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
129.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
124.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
124.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
123.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
121.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
120.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
119.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
116.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
115.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
113.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
112.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
112.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
111.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
108.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
108.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
107.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
103.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
101.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
100.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
100.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
99.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
96.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
95.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
91.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
89.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
88.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
88.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
82.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
81.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
79.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
79.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
75.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
75.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
74.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
70.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
68.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
66.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
65.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
60.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
54.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
54.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
53.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
52.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
51.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
49.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
46.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
39.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
33.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
427
Tumor
1.4
777
Tumor
1.2
135
Tumor
0.9
455
Tumor
0.8
523
Tumor
0.8
375
Tumor
0.7
395
Tumor
0.7
191
Tumor
0.7
615
Tumor
0.7
557
Tumor
0.6
187
Tumor
0.6
823
Tumor
0.6
211
Tumor
0.6
567
Tumor
0.6
141
Tumor
0.6
461
Tumor
0.6
627
Tumor
0.6
223
Tumor
0.6
137
Tumor
0.5
393
Tumor
0.5
525
Tumor
0.5
545
Tumor
0.5
975
Tumor
0.5
185
Tumor
0.5
951
Tumor
0.5
953
Tumor
0.4
817
Tumor
0.4
192
Normal
0.4
515
Tumor
0.4
881
Tumor
0.4
311
Tumor
0.4
857
Tumor
0.4
913
Tumor
0.4
327
Tumor
0.4
444
Normal
0.4
147
Tumor
0.4
498
Normal
0.4
145
Tumor
0.4
365
Tumor
0.3
513
Tumor
0.3
563
Tumor
0.3
421
Tumor
0.3
213
Tumor
0.3
297
Tumor
0.3
471
Tumor
0.3
535
Tumor
0.3
635
Tumor
0.3
917
Tumor
0.3
447
Tumor
0.3
785
Tumor
0.3
411
Tumor
0.3
814
Normal
0.3
527
Tumor
0.3
863
Tumor
0.3
1045
Tumor
0.3
383
Tumor
0.3
715
Tumor
0.3
573
Tumor
0.3
1043
Tumor
0.2
467
Tumor
0.2
161
Tumor
0.2
361
Tumor
0.2
867
Tumor
0.2
813
Tumor
0.2
271
Tumor
0.2
283
Tumor
0.2
257
Tumor
0.2
943
Tumor
0.2
478
Normal
0.2
125
Tumor
0.2
724
Normal
0.2
195
Tumor
0.2
491
Tumor
0.2
492
Normal
0.2
538
Normal
0.2
721
Tumor
0.2
916
Normal
0.2
188
Normal
0.1
697
Tumor
0.1
483
Tumor
0.1
434
Normal
0.1
536
Normal
0.1
385
Tumor
0.1
1028
Normal
0.1
671
Tumor
0.1
343
Tumor
0.1
355
Tumor
0.1
268
Normal
0.1
617
Tumor
0.1
224
Normal
0.1
433
Tumor
0.1
755
Tumor
0.1
386
Normal
0.1
126
Normal
0.1
267
Tumor
0.1
874
Normal
0.1
415
Tumor
0.1
641
Tumor
0.0
977
Tumor
0.0
923
Tumor
0.0
384
Normal
0.0
976
Normal
0.0
387
Tumor
0.0
313
Tumor
0.0
1015
Tumor
0.0
685
Tumor
0.0
493
Tumor
0.0
873
Tumor
0.0
524
Normal
0.0
284
Normal
0.0
955
Tumor
0.0
851
Tumor
0.0
477
Tumor
0.0
423
Tumor
0.0
852
Normal
0.0
925
Tumor
0.0
113
Tumor
0.0
487
Tumor
0.0
212
Normal
0.0
958
Normal
-0.1
1013
Tumor
-0.1
921
Tumor
-0.1
362
Normal
-0.1
231
Tumor
-0.1
786
Normal
-0.1
138
Normal
-0.1
861
Tumor
-0.1
146
Normal
-0.1
277
Tumor
-0.1
353
Tumor
-0.1
465
Tumor
-0.1
963
Tumor
-0.1
642
Normal
-0.1
428
Normal
-0.1
416
Normal
-0.1
737
Tumor
-0.1
884
Normal
-0.1
868
Normal
-0.1
952
Normal
-0.1
883
Tumor
-0.1
331
Tumor
-0.1
474
Normal
-0.1
368
Normal
-0.1
312
Normal
-0.1
497
Tumor
-0.1
364
Normal
-0.1
978
Normal
-0.1
956
Normal
-0.2
1044
Normal
-0.2
1042
Normal
-0.2
451
Tumor
-0.2
1025
Tumor
-0.2
1041
Tumor
-0.2
468
Normal
-0.2
816
Normal
-0.2
357
Tumor
-0.2
878
Normal
-0.2
628
Normal
-0.2
228
Normal
-0.2
516
Normal
-0.2
911
Tumor
-0.2
1021
Tumor
-0.2
262
Normal
-0.2
647
Tumor
-0.2
745
Tumor
-0.2
716
Normal
-0.2
272
Normal
-0.2
394
Normal
-0.2
574
Normal
-0.2
882
Normal
-0.2
443
Tumor
-0.2
388
Normal
-0.2
214
Normal
-0.2
663
Tumor
-0.2
422
Normal
-0.2
937
Tumor
-0.2
217
Tumor
-0.2
966
Normal
-0.2
424
Normal
-0.2
866
Normal
-0.2
472
Normal
-0.2
366
Normal
-0.2
136
Normal
-0.2
518
Normal
-0.2
526
Normal
-0.2
983
Tumor
-0.2
463
Tumor
-0.2
448
Normal
-0.2
981
Tumor
-0.3
914
Normal
-0.3
462
Normal
-0.3
713
Tumor
-0.3
957
Tumor
-0.3
778
Normal
-0.3
114
Normal
-0.3
481
Tumor
-0.3
533
Tumor
-0.3
286
Normal
-0.3
672
Normal
-0.3
982
Normal
-0.3
954
Normal
-0.3
528
Normal
-0.3
818
Normal
-0.3
425
Tumor
-0.3
728
Normal
-0.3
392
Normal
-0.3
488
Normal
-0.3
278
Normal
-0.3
111
Normal
-0.3
127
Tumor
-0.3
396
Normal
-0.3
494
Normal
-0.3
924
Normal
-0.3
514
Normal
-0.3
756
Normal
-0.3
218
Normal
-0.3
662
Normal
-0.3
456
Normal
-0.3
918
Normal
-0.3
172
Normal
-0.3
171
Tumor
-0.3
864
Normal
-0.3
432
Normal
-0.3
132
Normal
-0.3
727
Tumor
-0.3
714
Normal
-0.3
354
Normal
-0.3
686
Normal
-0.3
221
Tumor
-0.3
414
Normal
-0.3
558
Normal
-0.3
412
Normal
-0.4
142
Normal
-0.4
984
Normal
-0.4
413
Tumor
-0.4
877
Tumor
-0.4
824
Normal
-0.4
466
Normal
-0.4
922
Normal
-0.4
661
Tumor
-0.4
1027
Tumor
-0.4
968
Normal
-0.4
363
Tumor
-0.4
162
Normal
-0.4
1016
Normal
-0.4
915
Tumor
-0.4
938
Normal
-0.4
435
Tumor
-0.4
445
Tumor
-0.4
738
Normal
-0.4
537
Tumor
-0.4
696
Normal
-0.4
1032
Normal
-0.4
742
Normal
-0.4
1031
Tumor
-0.4
124
Normal
-0.4
858
Normal
-0.4
482
Normal
-0.4
436
Normal
-0.4
616
Normal
-0.4
618
Normal
-0.4
341
Tumor
-0.4
464
Normal
-0.4
376
Normal
-0.4
232
Normal
-0.4
314
Normal
-0.4
1022
Normal
-0.4
564
Normal
-0.4
741
Tumor
-0.4
148
Normal
-0.4
222
Normal
-0.4
426
Normal
-0.4
666
Normal
-0.4
1046
Normal
-0.4
328
Normal
-0.4
261
Tumor
-0.5
944
Normal
-0.5
698
Normal
-0.5
484
Normal
-0.5
446
Normal
-0.5
344
Normal
-0.5
664
Normal
-0.5
722
Normal
-0.5
964
Normal
-0.5
553
Tumor
-0.5
665
Tumor
-0.5
285
Tumor
-0.5
546
Normal
-0.5
912
Normal
-0.5
862
Normal
-0.5
1026
Normal
-0.5
723
Tumor
-0.5
186
Normal
-0.5
332
Normal
-0.5
298
Normal
-0.5
636
Normal
-0.5
926
Normal
-0.5
258
Normal
-0.5
572
Normal
-0.5
743
Tumor
-0.5
356
Normal
-0.5
196
Normal
-0.5
452
Normal
-0.5
534
Normal
-0.5
746
Normal
-0.5
695
Tumor
-0.6
128
Normal
-0.6
744
Normal
-0.6
554
Normal
-0.6
351
Tumor
-0.6
648
Normal
-0.6
1014
Normal
-0.6
358
Normal
-0.6
367
Tumor
-0.7
123
Tumor
-0.7
568
Normal
-0.7
865
Tumor
-0.7
391
Tumor
-0.7
131
Tumor
-0.7
352
Normal
-0.7
431
Tumor
-0.7
965
Tumor
-0.7
473
Tumor
-0.8
517
Tumor
-0.8
967
Tumor
-0.8
227
Tumor
-0.9
342
Normal
-0.9
571
Tumor
-1.1
112
Tumor
-1.1
815
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.