MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.6 nTPM
HPA Brain:42.1 nTPM
GTEx:42.6 nTPM
FANTOM5:17.4 Scaled Tags Per Million
Pig:54.8 nTPM
Mouse:68.5 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.0
1870 Female, age 42, unknown 41.4
2411 Female, age 72, unknown 40.5
2586 Male, age 75, left hemisphere 40.5
1830 Male, age 51, unknown 39.4
2828 Female, age 72, unknown 38.4
1833 Male, age 53, unknown 37.5
2019 Male, age 18, unknown 37.0
2219 Male, age 76, both hemispheres 35.7
1827 Male, age 72, unknown 35.2
2666 Male, age 74, left hemisphere 34.7
Dorsal raphe nucleus
nTPM: 38.5
1828 Male, age 53, unknown 41.4
2750 Male, age 76, both hemispheres 38.8
2298 Female, age 72, unknown 38.6
2016 Female, age 72, unknown 38.0
2047 Male, age 72, unknown 35.7
Inferior colliculus
nTPM: 35.9
1848 Female, age 42, unknown 38.3
1890 Male, age 53, unknown 37.9
2849 Male, age 72, unknown 33.8
2097 Female, age 72, unknown 33.6
Median raphe nucleus
nTPM: 35.6
2220 Male, age 76, midline 35.6
Periaquaductal grey, anterior
nTPM: 32.6
1947 Male, age 18, unknown 34.5
1795 Male, age 51, unknown 33.1
2502 Female, age 75, unknown 30.2
Periaquaductal grey, dorsal
nTPM: 31.9
2850 Male, age 76, both hemispheres 34.4
2464 Female, age 72, unknown 32.9
1831 Male, age 72, unknown 32.8
1840 Male, age 53, unknown 27.6
Periaquaductal grey, lateral
nTPM: 33.5
2272 Male, age 74, both hemispheres 36.5
2053 Male, age 18, unknown 33.0
2140 Male, age 76, both hemispheres 31.0
Pretectal area
nTPM: 37.9
2667 Female, age 75, unknown 44.6
1817 Female, age 42, unknown 40.7
2007 Male, age 72, unknown 39.1
1816 Male, age 51, unknown 38.9
1815 Male, age 53, unknown 38.5
1944 Female, age 72, unknown 37.2
2224 Female, age 72, unknown 37.2
2273 Male, age 74, both hemispheres 36.7
2407 Male, age 75, both hemispheres 36.3
2825 Male, age 18, unknown 34.7
2316 Male, age 76, right hemisphere 32.9
Red nucleus
nTPM: 42.1
1954 Female, age 42, unknown 46.4
1821 Female, age 72, unknown 46.3
1904 Male, age 53, unknown 44.4
2503 Female, age 72, unknown 44.1
2769 Male, age 72, unknown 43.6
2725 Female, age 75, unknown 43.1
1865 Male, age 51, unknown 43.0
2227 Male, age 72, unknown 41.8
2823 Male, age 76, right hemisphere 40.8
2588 Male, age 74, left hemisphere 38.2
2785 Male, age 18, unknown 38.0
2584 Male, age 75, left hemisphere 34.9
Substantia nigra
nTPM: 37.3
2699 Male, age 18, unknown 40.4
2241 Male, age 72, unknown 39.4
1916 Female, age 42, unknown 38.6
2583 Male, age 75, right hemisphere 38.1
1889 Female, age 72, unknown 37.6
1851 Male, age 51, unknown 37.1
1941 Male, age 53, unknown 36.7
2409 Female, age 72, unknown 36.2
2665 Male, age 74, both hemispheres 36.0
2590 Female, age 75, unknown 32.7
Superior colliculus
nTPM: 37.9
1913 Female, age 42, unknown 41.0
2261 Male, age 18, unknown 41.0
1995 Male, age 72, unknown 39.8
2087 Female, age 72, unknown 38.8
1796 Male, age 53, unknown 38.2
2668 Female, age 75, unknown 38.2
1839 Male, age 51, unknown 36.7
2587 Male, age 74, left hemisphere 36.0
1895 Male, age 76, right hemisphere 35.6
2664 Male, age 75, both hemispheres 33.3
Ventral tegmental area
nTPM: 37.7
2223 Female, age 72, unknown 41.4
2218 Male, age 76, both hemispheres 40.9
2410 Female, age 72, unknown 37.1
1915 Female, age 42, unknown 36.1
2021 Male, age 53, unknown 35.7
1942 Male, age 51, unknown 34.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 42.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.6
Samples: 139

Max nTPM: 73.8
Min nTPM: 28.7
Std nTPM: 8.0
Median nTPM: 41.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 73.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 64.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 62.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 60.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 60.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 59.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 58.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 58.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 57.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 53.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 53.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.4
FF:10158-103A5 76 years, female 17.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 54.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.7
Samples: 4

Max nTPM: 58.2
Min nTPM: 35.8
Sample A Female 58.2
Sample B Female 35.8
Sample C Male 49.7
Sample D Male 51.1
Midbrain
nTPM: 54.9
Samples: 4

Max nTPM: 86.2
Min nTPM: 40.8
Sample A Female 86.2
Sample B Female 48.6
Sample C Male 43.9
Sample D Male 40.8
Periaqueductal gray
nTPM: 43.0
Samples: 3

Max nTPM: 47.1
Min nTPM: 40.8
Sample B Female 41.2
Sample C Male 47.1
Sample D Male 40.8
Superior colliculi
nTPM: 49.8
Samples: 4

Max nTPM: 59.8
Min nTPM: 39.7
Sample A Female 59.8
Sample B Female 39.7
Sample C Male 50.0
Sample D Male 49.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 68.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.5
Samples: 4

Max nTPM: 73.5
Min nTPM: 64.9
Sample A Male 69.8
Sample B Male 64.9
Sample C Female 65.7
Sample D Female 73.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
69059804 Antisense, RP_050317_04_A09, Mouse strain C57BL/6J (56 days, male) 7.0

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