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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSPAN7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
145.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
58.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
54.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
51.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
50.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
44.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
43.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
41.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
39.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
39.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
35.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
34.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
32.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
32.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
29.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
21.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSPAN7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
231
Samples
Sample
Description
TPM
DO45259
0 years, male, NA, stage:3, alive, 330 days
118.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
47.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
37.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
36.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
35.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
31.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
31.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
744
Normal
1.6
352
Normal
1.4
472
Normal
1.3
868
Normal
1.2
1014
Normal
1.1
738
Normal
1.1
862
Normal
1.1
484
Normal
1.1
723
Tumor
1.1
142
Normal
1.1
481
Tumor
1.1
554
Normal
1.1
864
Normal
1.1
482
Normal
1.0
354
Normal
1.0
572
Normal
1.0
456
Normal
1.0
648
Normal
1.0
272
Normal
1.0
474
Normal
1.0
342
Normal
1.0
778
Normal
0.9
686
Normal
0.9
344
Normal
0.9
874
Normal
0.9
298
Normal
0.9
664
Normal
0.8
728
Normal
0.8
258
Normal
0.8
358
Normal
0.8
148
Normal
0.8
232
Normal
0.8
436
Normal
0.8
414
Normal
0.8
466
Normal
0.8
984
Normal
0.8
132
Normal
0.8
714
Normal
0.8
666
Normal
0.8
746
Normal
0.8
413
Tumor
0.8
464
Normal
0.8
488
Normal
0.8
616
Normal
0.8
1032
Normal
0.8
786
Normal
0.8
866
Normal
0.8
882
Normal
0.8
618
Normal
0.8
196
Normal
0.8
356
Normal
0.7
878
Normal
0.7
136
Normal
0.7
568
Normal
0.7
818
Normal
0.7
396
Normal
0.7
428
Normal
0.7
824
Normal
0.7
162
Normal
0.7
172
Normal
0.7
452
Normal
0.7
756
Normal
0.7
376
Normal
0.7
186
Normal
0.7
212
Normal
0.7
211
Tumor
0.7
478
Normal
0.7
884
Normal
0.7
278
Normal
0.7
1022
Normal
0.7
526
Normal
0.7
1016
Normal
0.7
218
Normal
0.6
642
Normal
0.6
672
Normal
0.6
956
Normal
0.6
918
Normal
0.6
388
Normal
0.6
468
Normal
0.6
286
Normal
0.6
446
Normal
0.6
138
Normal
0.6
494
Normal
0.6
564
Normal
0.6
426
Normal
0.6
636
Normal
0.6
938
Normal
0.6
964
Normal
0.6
926
Normal
0.6
742
Normal
0.6
1026
Normal
0.6
394
Normal
0.6
424
Normal
0.6
432
Normal
0.6
922
Normal
0.6
111
Normal
0.6
314
Normal
0.6
412
Normal
0.6
518
Normal
0.6
462
Normal
0.6
222
Normal
0.5
696
Normal
0.5
224
Normal
0.5
716
Normal
0.5
958
Normal
0.5
628
Normal
0.5
128
Normal
0.5
538
Normal
0.5
944
Normal
0.5
982
Normal
0.5
368
Normal
0.5
546
Normal
0.5
863
Tumor
0.5
146
Normal
0.5
858
Normal
0.5
498
Normal
0.5
516
Normal
0.5
873
Tumor
0.5
722
Normal
0.5
737
Tumor
0.5
514
Normal
0.4
574
Normal
0.4
332
Normal
0.4
816
Normal
0.4
364
Normal
0.4
384
Normal
0.4
924
Normal
0.4
867
Tumor
0.4
534
Normal
0.4
228
Normal
0.4
422
Normal
0.4
328
Normal
0.4
416
Normal
0.4
954
Normal
0.4
524
Normal
0.4
192
Normal
0.4
284
Normal
0.3
952
Normal
0.3
662
Normal
0.3
558
Normal
0.3
914
Normal
0.3
1028
Normal
0.3
362
Normal
0.3
366
Normal
0.3
571
Tumor
0.3
131
Tumor
0.3
473
Tumor
0.3
312
Normal
0.3
271
Tumor
0.3
124
Normal
0.3
912
Normal
0.3
852
Normal
0.3
865
Tumor
0.3
978
Normal
0.2
386
Normal
0.2
126
Normal
0.2
1042
Normal
0.2
968
Normal
0.2
444
Normal
0.2
393
Tumor
0.2
966
Normal
0.2
983
Tumor
0.2
114
Normal
0.2
285
Tumor
0.1
217
Tumor
0.1
955
Tumor
0.1
823
Tumor
0.1
976
Normal
0.1
916
Normal
0.1
434
Normal
0.1
214
Normal
0.1
268
Normal
0.1
536
Normal
0.1
195
Tumor
0.1
967
Tumor
0.0
861
Tumor
0.0
615
Tumor
0.0
262
Normal
0.0
965
Tumor
0.0
857
Tumor
0.0
698
Normal
0.0
528
Normal
0.0
1046
Normal
0.0
963
Tumor
0.0
463
Tumor
0.0
477
Tumor
-0.1
851
Tumor
-0.1
557
Tumor
-0.1
415
Tumor
-0.1
221
Tumor
-0.1
188
Normal
-0.1
283
Tumor
-0.1
743
Tumor
-0.1
953
Tumor
-0.1
785
Tumor
-0.2
492
Normal
-0.2
563
Tumor
-0.2
545
Tumor
-0.2
721
Tumor
-0.2
814
Normal
-0.2
1025
Tumor
-0.2
297
Tumor
-0.2
367
Tumor
-0.2
448
Normal
-0.2
1031
Tumor
-0.2
567
Tumor
-0.2
147
Tumor
-0.2
975
Tumor
-0.2
553
Tumor
-0.3
881
Tumor
-0.3
911
Tumor
-0.3
227
Tumor
-0.3
883
Tumor
-0.3
517
Tumor
-0.3
917
Tumor
-0.3
363
Tumor
-0.3
957
Tumor
-0.3
943
Tumor
-0.3
671
Tumor
-0.3
573
Tumor
-0.3
815
Tumor
-0.4
817
Tumor
-0.4
327
Tumor
-0.4
537
Tumor
-0.4
937
Tumor
-0.4
223
Tumor
-0.4
187
Tumor
-0.4
461
Tumor
-0.5
191
Tumor
-0.5
125
Tumor
-0.5
981
Tumor
-0.5
951
Tumor
-0.5
471
Tumor
-0.5
641
Tumor
-0.5
213
Tumor
-0.5
727
Tumor
-0.5
277
Tumor
-0.5
1027
Tumor
-0.5
695
Tumor
-0.5
617
Tumor
-0.5
261
Tumor
-0.5
1045
Tumor
-0.6
411
Tumor
-0.6
1041
Tumor
-0.6
913
Tumor
-0.6
392
Normal
-0.6
1013
Tumor
-0.6
385
Tumor
-0.6
185
Tumor
-0.6
447
Tumor
-0.6
355
Tumor
-0.7
451
Tumor
-0.7
311
Tumor
-0.7
365
Tumor
-0.7
745
Tumor
-0.7
145
Tumor
-0.7
483
Tumor
-0.7
921
Tumor
-0.7
813
Tumor
-0.7
515
Tumor
-0.7
627
Tumor
-0.7
487
Tumor
-0.8
1044
Normal
-0.8
127
Tumor
-0.8
467
Tumor
-0.8
421
Tumor
-0.8
513
Tumor
-0.8
647
Tumor
-0.8
423
Tumor
-0.8
113
Tumor
-0.8
465
Tumor
-0.8
331
Tumor
-0.8
375
Tumor
-0.9
497
Tumor
-0.9
877
Tumor
-0.9
383
Tumor
-0.9
353
Tumor
-0.9
741
Tumor
-0.9
455
Tumor
-0.9
523
Tumor
-0.9
141
Tumor
-0.9
925
Tumor
-0.9
1021
Tumor
-0.9
491
Tumor
-0.9
533
Tumor
-0.9
715
Tumor
-0.9
137
Tumor
-0.9
433
Tumor
-0.9
923
Tumor
-1.0
1043
Tumor
-1.0
635
Tumor
-1.0
427
Tumor
-1.0
525
Tumor
-1.0
777
Tumor
-1.0
425
Tumor
-1.0
361
Tumor
-1.0
387
Tumor
-1.0
313
Tumor
-1.0
135
Tumor
-1.1
527
Tumor
-1.1
341
Tumor
-1.1
493
Tumor
-1.1
267
Tumor
-1.1
351
Tumor
-1.1
435
Tumor
-1.1
713
Tumor
-1.1
663
Tumor
-1.2
112
Tumor
-1.2
445
Tumor
-1.2
915
Tumor
-1.3
391
Tumor
-1.3
1015
Tumor
-1.3
755
Tumor
-1.3
697
Tumor
-1.3
161
Tumor
-1.3
535
Tumor
-1.3
357
Tumor
-1.3
395
Tumor
-1.4
343
Tumor
-1.4
431
Tumor
-1.4
171
Tumor
-1.4
977
Tumor
-1.5
123
Tumor
-1.5
443
Tumor
-1.6
665
Tumor
-1.6
661
Tumor
-1.7
685
Tumor
-1.7
257
Tumor
-1.9
724
Normal
-1.9
231
Tumor
-2.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
