MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.0 nTPM
HPA Brain:248.8 nTPM
GTEx:66.0 nTPM
FANTOM5:49.7 Scaled Tags Per Million
Pig:123.9 nTPM
Mouse:538.4 nTPM
Allen mouse:13.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 248.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 170.2
2219 Male, age 76, both hemispheres 217.5
1827 Male, age 72, unknown 199.5
2666 Male, age 74, left hemisphere 181.7
2586 Male, age 75, left hemisphere 175.7
2019 Male, age 18, unknown 173.0
1870 Female, age 42, unknown 162.3
2828 Female, age 72, unknown 159.6
2411 Female, age 72, unknown 155.8
1833 Male, age 53, unknown 142.7
1830 Male, age 51, unknown 134.1
Dorsal raphe nucleus
nTPM: 160.8
2750 Male, age 76, both hemispheres 189.0
2047 Male, age 72, unknown 186.4
1828 Male, age 53, unknown 168.5
2298 Female, age 72, unknown 154.3
2016 Female, age 72, unknown 106.1
Inferior colliculus
nTPM: 248.8
2097 Female, age 72, unknown 367.5
1848 Female, age 42, unknown 230.6
1890 Male, age 53, unknown 207.2
2849 Male, age 72, unknown 189.7
Median raphe nucleus
nTPM: 238.5
2220 Male, age 76, midline 238.5
Periaquaductal grey, anterior
nTPM: 189.3
2502 Female, age 75, unknown 195.2
1795 Male, age 51, unknown 189.9
1947 Male, age 18, unknown 182.8
Periaquaductal grey, dorsal
nTPM: 153.6
2464 Female, age 72, unknown 184.8
1831 Male, age 72, unknown 144.8
2850 Male, age 76, both hemispheres 142.8
1840 Male, age 53, unknown 141.8
Periaquaductal grey, lateral
nTPM: 112.4
2140 Male, age 76, both hemispheres 139.8
2053 Male, age 18, unknown 130.7
2272 Male, age 74, both hemispheres 66.8
Pretectal area
nTPM: 194.2
1944 Female, age 72, unknown 292.1
1816 Male, age 51, unknown 275.7
2667 Female, age 75, unknown 248.9
2007 Male, age 72, unknown 240.4
1817 Female, age 42, unknown 215.2
1815 Male, age 53, unknown 189.3
2316 Male, age 76, right hemisphere 165.4
2224 Female, age 72, unknown 155.5
2825 Male, age 18, unknown 146.8
2407 Male, age 75, both hemispheres 131.4
2273 Male, age 74, both hemispheres 75.4
Red nucleus
nTPM: 141.1
2588 Male, age 74, left hemisphere 186.6
1821 Female, age 72, unknown 168.4
2725 Female, age 75, unknown 162.6
2785 Male, age 18, unknown 161.7
2503 Female, age 72, unknown 142.4
1954 Female, age 42, unknown 142.3
2227 Male, age 72, unknown 131.3
2769 Male, age 72, unknown 131.0
2823 Male, age 76, right hemisphere 127.2
1865 Male, age 51, unknown 126.5
1904 Male, age 53, unknown 111.5
2584 Male, age 75, left hemisphere 101.5
Substantia nigra
nTPM: 176.0
1941 Male, age 53, unknown 275.1
1916 Female, age 42, unknown 255.4
2241 Male, age 72, unknown 230.0
1889 Female, age 72, unknown 219.0
1851 Male, age 51, unknown 204.8
2409 Female, age 72, unknown 158.9
2699 Male, age 18, unknown 145.5
2665 Male, age 74, both hemispheres 124.6
2583 Male, age 75, right hemisphere 87.5
2590 Female, age 75, unknown 59.8
Superior colliculus
nTPM: 197.4
2668 Female, age 75, unknown 302.5
1895 Male, age 76, right hemisphere 292.2
2087 Female, age 72, unknown 223.7
2587 Male, age 74, left hemisphere 223.0
1796 Male, age 53, unknown 218.1
2261 Male, age 18, unknown 181.4
1839 Male, age 51, unknown 163.5
2664 Male, age 75, both hemispheres 134.6
1913 Female, age 42, unknown 129.0
1995 Male, age 72, unknown 105.7
Ventral tegmental area
nTPM: 192.8
2223 Female, age 72, unknown 234.7
2218 Male, age 76, both hemispheres 229.3
1915 Female, age 42, unknown 211.4
2410 Female, age 72, unknown 170.6
2021 Male, age 53, unknown 156.7
1942 Male, age 51, unknown 154.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 66.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.0
Samples: 139

Max nTPM: 297.1
Min nTPM: 16.4
Std nTPM: 39.9
Median nTPM: 57.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 297.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 233.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 196.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 175.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 171.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 157.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 126.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 124.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 121.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 121.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 113.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 49.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.7
FF:10158-103A5 76 years, female 49.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 123.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 97.6
Samples: 4

Max nTPM: 137.6
Min nTPM: 51.5
Sample A Female 137.6
Sample B Female 65.9
Sample C Male 135.5
Sample D Male 51.5
Midbrain
nTPM: 118.8
Samples: 4

Max nTPM: 183.1
Min nTPM: 38.5
Sample A Female 38.5
Sample B Female 75.9
Sample C Male 183.1
Sample D Male 177.7
Periaqueductal gray
nTPM: 80.5
Samples: 3

Max nTPM: 101.6
Min nTPM: 69.4
Sample B Female 69.4
Sample C Male 101.6
Sample D Male 70.5
Superior colliculi
nTPM: 124.0
Samples: 4

Max nTPM: 170.3
Min nTPM: 47.9
Sample A Female 129.8
Sample B Female 47.9
Sample C Male 170.3
Sample D Male 147.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 538.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 538.4
Samples: 4

Max nTPM: 559.2
Min nTPM: 516.8
Sample A Male 528.3
Sample B Male 516.8
Sample C Female 559.2
Sample D Female 549.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.7
79360322 Antisense, RP_071018_02_A11, Mouse strain C57BL/6J (56 days, male) 13.7
79556603 Antisense, RP_071018_02_A11, Mouse strain C57BL/6J (56 days, male) 12.9

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