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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC16A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
208.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
154.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
143.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
137.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
137.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
136.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
112.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
110.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
109.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
108.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
105.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
88.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
86.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
86.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
85.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
83.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
81.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
79.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
75.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
72.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
70.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
66.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
64.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
64.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
63.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
61.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
57.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
57.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
57.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
56.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
55.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
53.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
51.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
50.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
50.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
50.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
48.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
48.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
47.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
46.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
46.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
46.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
45.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
44.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
44.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
43.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
43.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
42.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
41.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
41.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
41.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
41.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
40.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
40.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
38.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
38.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
36.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
36.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
35.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
35.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
35.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
35.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
34.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
34.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
34.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
33.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
33.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
33.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
33.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
32.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
32.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
31.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
31.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
31.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
30.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
29.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
28.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
28.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
27.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
24.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
23.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
22.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC16A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.4
Number of samples
231
Samples
Sample
Description
TPM
DO45091
0 years, male, NA, stage:2, dead, 1320 days
256.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
196.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
181.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
169.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
135.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
110.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
109.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
105.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
98.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
88.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
87.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
86.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
81.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
70.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
69.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
69.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
68.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
64.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
63.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
62.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
60.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
59.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
57.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
56.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
54.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
52.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
51.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
51.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
50.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
50.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
49.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
47.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
46.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
44.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
44.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
44.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
43.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
42.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
42.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
40.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
39.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
38.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
38.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
38.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
37.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
36.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
35.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
35.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
33.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
33.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
33.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
32.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
31.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
30.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
29.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
26.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
23.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
2.1
715
Tumor
1.6
965
Tumor
1.4
883
Tumor
1.2
967
Tumor
1.2
724
Normal
1.2
537
Tumor
1.1
487
Tumor
1.0
411
Tumor
1.0
483
Tumor
1.0
953
Tumor
0.9
741
Tumor
0.9
393
Tumor
0.8
171
Tumor
0.8
958
Normal
0.8
727
Tumor
0.8
351
Tumor
0.7
451
Tumor
0.7
977
Tumor
0.7
571
Tumor
0.7
261
Tumor
0.7
1041
Tumor
0.6
1027
Tumor
0.6
686
Normal
0.6
922
Normal
0.6
488
Normal
0.6
567
Tumor
0.6
966
Normal
0.5
554
Normal
0.5
878
Normal
0.5
695
Tumor
0.5
147
Tumor
0.5
698
Normal
0.5
436
Normal
0.5
435
Tumor
0.5
716
Normal
0.5
452
Normal
0.5
984
Normal
0.5
915
Tumor
0.5
955
Tumor
0.5
344
Normal
0.5
951
Tumor
0.5
968
Normal
0.4
1032
Normal
0.4
957
Tumor
0.4
813
Tumor
0.4
1021
Tumor
0.4
912
Normal
0.4
465
Tumor
0.4
461
Tumor
0.4
873
Tumor
0.4
1022
Normal
0.4
196
Normal
0.4
882
Normal
0.4
1044
Normal
0.4
864
Normal
0.4
851
Tumor
0.4
448
Normal
0.4
721
Tumor
0.4
125
Tumor
0.4
484
Normal
0.4
466
Normal
0.4
132
Normal
0.4
557
Tumor
0.3
615
Tumor
0.3
231
Tumor
0.3
391
Tumor
0.3
357
Tumor
0.3
618
Normal
0.3
523
Tumor
0.3
128
Normal
0.3
462
Normal
0.3
924
Normal
0.3
723
Tumor
0.3
412
Normal
0.3
628
Normal
0.3
944
Normal
0.3
756
Normal
0.3
918
Normal
0.3
1046
Normal
0.3
616
Normal
0.3
963
Tumor
0.3
964
Normal
0.3
285
Tumor
0.3
884
Normal
0.3
314
Normal
0.3
636
Normal
0.3
376
Normal
0.3
528
Normal
0.3
278
Normal
0.3
313
Tumor
0.3
982
Normal
0.3
127
Tumor
0.3
474
Normal
0.3
375
Tumor
0.3
214
Normal
0.3
416
Normal
0.3
818
Normal
0.3
742
Normal
0.2
342
Normal
0.2
714
Normal
0.2
277
Tumor
0.2
356
Normal
0.2
328
Normal
0.2
124
Normal
0.2
367
Tumor
0.2
568
Normal
0.2
538
Normal
0.2
414
Normal
0.2
433
Tumor
0.2
1025
Tumor
0.2
824
Normal
0.2
368
Normal
0.2
572
Normal
0.2
286
Normal
0.2
446
Normal
0.2
354
Normal
0.2
923
Tumor
0.2
383
Tumor
0.2
877
Tumor
0.2
862
Normal
0.2
938
Normal
0.2
481
Tumor
0.2
978
Normal
0.2
227
Tumor
0.2
1031
Tumor
0.2
113
Tumor
0.2
443
Tumor
0.2
627
Tumor
0.2
536
Normal
0.1
445
Tumor
0.1
332
Normal
0.1
426
Normal
0.1
425
Tumor
0.1
148
Normal
0.1
976
Normal
0.1
722
Normal
0.1
482
Normal
0.1
473
Tumor
0.1
138
Normal
0.1
1026
Normal
0.1
1016
Normal
0.1
298
Normal
0.1
162
Normal
0.1
737
Tumor
0.1
516
Normal
0.1
728
Normal
0.1
665
Tumor
0.1
617
Tumor
0.1
392
Normal
0.1
514
Normal
0.1
746
Normal
0.1
1042
Normal
0.1
852
Normal
0.1
1028
Normal
0.1
785
Tumor
0.1
858
Normal
0.1
954
Normal
0.1
524
Normal
0.1
696
Normal
0.1
697
Tumor
0.1
952
Normal
0.1
434
Normal
0.1
981
Tumor
0.0
114
Normal
0.0
186
Normal
0.0
664
Normal
0.0
558
Normal
0.0
866
Normal
0.0
534
Normal
0.0
738
Normal
0.0
546
Normal
0.0
1014
Normal
0.0
914
Normal
0.0
642
Normal
0.0
362
Normal
0.0
1015
Tumor
0.0
232
Normal
0.0
387
Tumor
0.0
394
Normal
0.0
553
Tumor
0.0
661
Tumor
0.0
111
Normal
0.0
867
Tumor
0.0
672
Normal
0.0
161
Tumor
0.0
1045
Tumor
0.0
126
Normal
0.0
145
Tumor
0.0
786
Normal
0.0
525
Tumor
0.0
222
Normal
0.0
574
Normal
0.0
911
Tumor
0.0
218
Normal
0.0
916
Normal
0.0
1013
Tumor
0.0
388
Normal
0.0
358
Normal
0.0
384
Normal
-0.1
956
Normal
-0.1
172
Normal
-0.1
863
Tumor
-0.1
663
Tumor
-0.1
1043
Tumor
-0.1
456
Normal
-0.1
415
Tumor
-0.1
815
Tumor
-0.1
432
Normal
-0.1
428
Normal
-0.1
352
Normal
-0.1
217
Tumor
-0.1
191
Tumor
-0.1
212
Normal
-0.1
778
Normal
-0.1
422
Normal
-0.1
468
Normal
-0.1
355
Tumor
-0.1
343
Tumor
-0.1
431
Tumor
-0.1
364
Normal
-0.1
494
Normal
-0.1
666
Normal
-0.2
341
Tumor
-0.2
463
Tumor
-0.2
943
Tumor
-0.2
926
Normal
-0.2
913
Tumor
-0.2
526
Normal
-0.2
327
Tumor
-0.2
353
Tumor
-0.2
517
Tumor
-0.2
257
Tumor
-0.2
331
Tumor
-0.2
755
Tumor
-0.2
366
Normal
-0.2
662
Normal
-0.2
464
Normal
-0.2
777
Tumor
-0.3
518
Normal
-0.3
874
Normal
-0.3
493
Tumor
-0.3
444
Normal
-0.3
185
Tumor
-0.3
385
Tumor
-0.3
284
Normal
-0.3
146
Normal
-0.3
744
Normal
-0.3
137
Tumor
-0.3
868
Normal
-0.3
312
Normal
-0.3
427
Tumor
-0.3
641
Tumor
-0.3
515
Tumor
-0.3
224
Normal
-0.3
187
Tumor
-0.3
192
Normal
-0.3
745
Tumor
-0.3
861
Tumor
-0.3
814
Normal
-0.3
365
Tumor
-0.3
472
Normal
-0.3
258
Normal
-0.3
297
Tumor
-0.3
386
Normal
-0.3
421
Tumor
-0.3
136
Normal
-0.4
195
Tumor
-0.4
361
Tumor
-0.4
491
Tumor
-0.4
513
Tumor
-0.4
816
Normal
-0.4
648
Normal
-0.4
533
Tumor
-0.4
228
Normal
-0.4
363
Tumor
-0.4
647
Tumor
-0.4
424
Normal
-0.4
823
Tumor
-0.4
262
Normal
-0.4
865
Tumor
-0.4
563
Tumor
-0.4
535
Tumor
-0.4
817
Tumor
-0.5
423
Tumor
-0.5
267
Tumor
-0.5
447
Tumor
-0.5
141
Tumor
-0.5
135
Tumor
-0.5
311
Tumor
-0.5
635
Tumor
-0.5
396
Normal
-0.5
123
Tumor
-0.5
497
Tumor
-0.5
564
Normal
-0.5
395
Tumor
-0.5
743
Tumor
-0.5
188
Normal
-0.5
881
Tumor
-0.5
142
Normal
-0.5
671
Tumor
-0.5
213
Tumor
-0.6
857
Tumor
-0.6
112
Tumor
-0.6
925
Tumor
-0.6
271
Tumor
-0.6
492
Normal
-0.6
272
Normal
-0.6
498
Normal
-0.6
573
Tumor
-0.6
527
Tumor
-0.6
477
Tumor
-0.7
467
Tumor
-0.7
131
Tumor
-0.7
713
Tumor
-0.7
268
Normal
-0.7
983
Tumor
-0.7
975
Tumor
-0.7
223
Tumor
-0.8
283
Tumor
-0.8
455
Tumor
-0.8
413
Tumor
-0.8
921
Tumor
-0.8
917
Tumor
-0.9
478
Normal
-0.9
545
Tumor
-1.0
221
Tumor
-1.1
211
Tumor
-1.1
937
Tumor
-1.2
471
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
