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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
465.9
nTPM
FANTOM5:
343.6
Scaled Tags Per Million
Pig:
355.5
nTPM
Allen mouse:
5.8
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
465.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 448.4
2090
Male, age 80, both hemispheres
485.5
2301
Female, age 85, both hemispheres
467.9
2188
Female, age 91, both hemispheres
445.0
1984
Male, age 76, both hemispheres
395.4
Dorsal cochlear nucleus nTPM: 430.6
2802
Male, age 74, right hemisphere
468.0
2187
Female, age 91, both hemispheres
442.5
2370
Male, age 61, both hemispheres
427.0
2378
Male, age 80, both hemispheres
416.2
2058
Male, age 76, both hemispheres
399.3
Dorsal tegmental nucleus nTPM: 445.3
2326
Male, age 74, both hemispheres
478.9
2083
Male, age 80, both hemispheres
469.2
1936
Male, age 76, left hemisphere
417.3
2358
Male, age 61, both hemispheres
415.9
Dorsolateral tegmental area nTPM: 447.8
2337
Male, age 61, both hemispheres
574.7
2654
Male, age 80, both hemispheres
492.6
2751
Female, age 85, both hemispheres
428.8
2360
Male, age 74, both hemispheres
394.2
2141
Male, age 76, both hemispheres
348.8
Kolliker-Fuse nucleus nTPM: 445.6
2315
Male, age 76, right hemisphere
510.9
2793
Female, age 91, left hemisphere
417.8
2163
Male, age 80, both hemispheres
408.0
Lateral lemniscal nuclei nTPM: 330.8
2746
Female, age 85, left hemisphere
383.2
2320
Female, age 91, left hemisphere
371.4
2169
Male, age 76, both hemispheres
336.2
2453
Male, age 74, right hemisphere
325.1
2036
Male, age 80, both hemispheres
238.0
Lateral parabrachial nucleus nTPM: 447.6
2792
Male, age 76, both hemispheres
517.6
2013
Male, age 80, both hemispheres
477.4
2139
Female, age 85, right hemisphere
399.5
2790
Male, age 61, both hemispheres
396.0
Lateral vestibular nucleus nTPM: 433.6
2311
Male, age 80, both hemispheres
489.8
2184
Male, age 76, both hemispheres
377.3
Locus coeruleus nTPM: 376.3
2123
Female, age 91, both hemispheres
424.3
2162
Male, age 80, both hemispheres
398.9
2720
Male, age 74, both hemispheres
378.7
2014
Male, age 55, unknown
375.7
1980
Male, age 76, both hemispheres
375.2
2317
Female, age 72, unknown
370.4
2788
Male, age 74, unknown
310.9
Medial parabrachial nucleus nTPM: 424.7
2170
Female, age 91, both hemispheres
478.2
2156
Male, age 61, both hemispheres
438.1
2463
Female, age 85, right hemisphere
423.0
2786
Male, age 76, both hemispheres
393.0
2854
Male, age 80, both hemispheres
391.0
Medial periolivary nuclei nTPM: 375.7
2081
Male, age 80, both hemispheres
431.8
2063
Male, age 76, both hemispheres
417.8
2791
Male, age 74, right hemisphere
354.8
2458
Female, age 91, both hemispheres
351.8
2171
Female, age 85, both hemispheres
322.2
Motor facial nucleus nTPM: 382.0
2126
Male, age 61, both hemispheres
438.9
2795
Female, age 91, both hemispheres
406.4
2062
Male, age 76, both hemispheres
395.9
2365
Male, age 74, right hemisphere
372.7
2697
Female, age 85, both hemispheres
346.6
2327
Male, age 80, both hemispheres
331.3
Motor trigeminal nucleus nTPM: 408.6
2335
Male, age 61, both hemispheres
442.7
2560
Male, age 74, both hemispheres
434.5
2321
Female, age 91, both hemispheres
408.8
2309
Male, age 76, both hemispheres
386.1
2079
Male, age 80, both hemispheres
370.9
Nuclei of the trapezoid body nTPM: 386.0
1983
Male, age 76, both hemispheres
488.7
2368
Female, age 91, both hemispheres
385.2
2166
Male, age 80, both hemispheres
376.9
2159
Male, age 61, both hemispheres
342.6
2735
Female, age 85, both hemispheres
336.5
Nucleus raphe magnus nTPM: 366.9
2051
Male, age 76, both hemispheres
408.6
2455
Male, age 74, both hemispheres
377.2
2459
Female, age 91, both hemispheres
372.4
2328
Male, age 80, both hemispheres
362.9
2160
Male, age 61, both hemispheres
359.6
2172
Female, age 85, both hemispheres
320.5
Paramedian reticular nucleus nTPM: 404.3
2313
Male, age 61, both hemispheres
420.0
2057
Male, age 80, both hemispheres
418.6
2052
Male, age 76, both hemispheres
405.6
2050
Female, age 85, both hemispheres
372.9
Pedunculopontine tegmental nucleus nTPM: 429.3
2338
Male, age 61, both hemispheres
473.9
2334
Male, age 80, both hemispheres
463.3
1921
Female, age 85, both hemispheres
350.8
Pontine nuclei nTPM: 402.6
1863
Male, age 55, unknown
453.4
2319
Female, age 91, both hemispheres
435.3
2454
Male, age 74, left hemisphere
403.5
2115
Male, age 80, left hemisphere
399.8
2109
Female, age 72, unknown
391.8
1968
Male, age 76, left hemisphere
389.6
2787
Female, age 85, both hemispheres
380.2
2727
Male, age 61, right hemisphere
367.1
Pontine raphe nucleus nTPM: 383.5
2853
Male, age 76, midline
391.3
2122
Female, age 85, midline
375.6
Posteroventral cochlear nucleus nTPM: 465.9
2135
Female, age 91, both hemispheres
528.0
2371
Male, age 61, both hemispheres
501.8
2341
Male, age 80, both hemispheres
491.9
2752
Female, age 85, both hemispheres
417.9
2070
Male, age 76, both hemispheres
389.8
Principal sensory trigeminal nucleus nTPM: 361.7
2367
Female, age 91, left hemisphere
397.9
2324
Male, age 76, both hemispheres
372.3
2158
Male, age 61, both hemispheres
358.0
2008
Male, age 80, left hemisphere
318.8
Reticular pontine nucleus, caudal nTPM: 408.5
2559
Male, age 74, both hemispheres
463.4
2457
Female, age 91, both hemispheres
434.5
2092
Male, age 76, both hemispheres
428.8
2332
Male, age 80, right hemisphere
307.3
Reticular pontine nucleus, oral nTPM: 399.4
2366
Female, age 91, both hemispheres
436.6
1939
Male, age 80, both hemispheres
435.5
2167
Male, age 76, both hemispheres
395.3
2361
Male, age 74, both hemispheres
372.5
2012
Female, age 85, both hemispheres
357.2
Reticulotegmental nucleus nTPM: 395.9
2452
Male, age 74, both hemispheres
457.5
2322
Female, age 91, both hemispheres
397.9
2333
Male, age 80, both hemispheres
390.9
2325
Male, age 76, both hemispheres
337.1
Spinal trigeminal nucleus, oral nTPM: 381.9
1978
Male, age 76, both hemispheres
392.8
2164
Male, age 80, both hemispheres
391.5
2737
Female, age 85, both hemispheres
361.3
Subcoeruleus area nTPM: 407.2
2451
Male, age 74, both hemispheres
488.9
2369
Female, age 85, left hemisphere
434.8
2323
Female, age 91, left hemisphere
396.7
1958
Male, age 80, both hemispheres
378.4
2089
Male, age 76, left hemisphere
337.0
Superior olive nTPM: 384.9
2020
Male, age 76, both hemispheres
466.6
2561
Female, age 91, both hemispheres
421.8
2364
Male, age 74, right hemisphere
365.3
2329
Male, age 80, right hemisphere
345.6
1875
Female, age 85, both hemispheres
325.0
Ventral periolivary nuclei nTPM: 367.7
2023
Male, age 76, both hemispheres
414.8
2165
Male, age 80, both hemispheres
365.4
2794
Female, age 91, left hemisphere
359.0
2130
Female, age 85, both hemispheres
331.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 380.2
2359
Male, age 61, both hemispheres
417.9
2456
Female, age 91, both hemispheres
400.3
2161
Male, age 80, both hemispheres
392.9
1959
Male, age 76, both hemispheres
392.3
2840
Female, age 85, both hemispheres
354.0
2449
Male, age 74, both hemispheres
324.1
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
355.5
Pig sample
Sample description
nTPM
Pons nTPM: 355.5
Samples: 4
Max nTPM: 425.3
Min nTPM: 246.6
Sample A
Female
376.9
Sample B
Female
246.6
Sample C
Male
425.3
Sample D
Male
373.3
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
