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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
Brain methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:211.6 nTPM
GTEx:211.6 nTPM
FANTOM5:504.3 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 211.6
Samples: 105

Max nTPM: 382.7
Min nTPM: 45.5
Std nTPM: 66.8
Median nTPM:
353_1 82 years, female 382.7
352_1 62 years, male 371.6
356_1 87 years, female 364.4
319_1 81 years, male 341.6
163_1 78 years, male 340.8
218_1 71 years, female 340.4
452_1 88 years, female 339.2
351_1 91 years, male 332.7
321_1 62 years, female 325.2
354_1 81 years, female 318.8
320_1 89 years, female 318.0
355_1 70 years, female 314.1
350_1 84 years, female 298.8
377_1 82 years, female 296.8
17_1 71 years, male 278.1
386_1 76 years, male 276.4
177_1 74 years, male 270.2
322_1 76 years, male 267.4
295_1 61 years, female 262.6
349_1 83 years, male 257.8
2_1 77 years, female 253.3
506_1 65 years, male 250.1
394_1 75 years, female 247.7
4_1 88 years, female 243.0
172_1 72 years, female 242.9
376_1 75 years, female 242.6
189_1 76 years, male 240.3
173_1 67 years, male 239.7
293_1 68 years, female 239.1
246_1 77 years, male 238.5
243_1 75 years, male 235.5
379_1 60 years, male 233.1
447_1 81 years, male 231.8
35_1 74 years, female 231.2
406_1 79 years, male 224.8
286_1 68 years, female 224.4
335_1 73 years, female 223.7
6_1 73 years, female 222.5
503_1 68 years, male 220.8
389_1 86 years, female 219.2
251_1 78 years, male 218.5
318_1 68 years, male 218.3
404_1 82 years, female 218.0
153_1 70 years, female 217.0
317_1 60 years, male 217.0
292_1 71 years, male 216.9
316_1 62 years, male 211.8
526_1 61 years, male 211.4
137_1 83 years, male 211.0
375_1 74 years, female 211.0
266_1 85 years, male 210.9
120_1 70 years, female 209.4
41_1 94 years, female 209.3
384_1 83 years, male 209.0
109_1 81 years, female 208.3
425_1 59 years, female 208.1
311_1 78 years, male 206.4
237_1 82 years, male 205.2
139_1 64 years, female 202.7
264_1 73 years, female 202.6
405_1 91 years, male 202.0
396_1 62 years, male 200.2
126_1 63 years, male 199.1
347_1 72 years, male 199.1
517_1 88 years, male 198.5
99_1 64 years, male 197.6
115_1 83 years, male 193.0
518_1 75 years, female 191.3
307_1 66 years, female 189.8
480_1 63 years, male 189.0
265_1 87 years, male 188.6
145_1 84 years, male 186.6
288_1 66 years, female 183.4
468_1 89 years, male 182.7
229_1 69 years, female 182.4
254_1 77 years, female 180.9
313_1 79 years, female 177.9
291_1 76 years, male 177.6
18_1 88 years, male 177.4
499_1 55 years, female 173.2
119_1 70 years, female 172.5
348_1 84 years, male 170.4
315_1 62 years, female 165.6
324_1 76 years, male 159.4
314_1 67 years, male 157.9
117_1 61 years, male 157.7
142_1 61 years, female 156.4
495_1 57 years, female 156.4
308_1 70 years, female 156.1
9_1 66 years, female 153.5
81_1 67 years, male 147.4
217_1 76 years, male 142.9
42_1 85 years, male 142.1
414_1 84 years, female 125.4
89_1 63 years, male 121.8
162_1 79 years, female 121.0
32_1 67 years, male 116.7
415_1 77 years, female 115.7
43_1 64 years, female 112.8
501_1 88 years, male 110.7
466_1 57 years, female 110.0
149_1 88 years, male 93.8
413_1 59 years, female 64.0
491_1 89 years, female 46.4
490_1 67 years, female 45.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

504.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 504.3
FF:10030-101E3 24-65 years, mixed 504.3

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