MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:834.4 nTPM
HPA Brain:464.6 nTPM
GTEx:834.4 nTPM
FANTOM5:445.9 Scaled Tags Per Million
Pig:343.3 nTPM
Mouse:395.0 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 464.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 429.1
2586 Male, age 75, left hemisphere 500.5
2828 Female, age 72, unknown 445.0
2666 Male, age 74, left hemisphere 442.4
2019 Male, age 18, unknown 442.2
2411 Female, age 72, unknown 441.0
1833 Male, age 53, unknown 422.7
1827 Male, age 72, unknown 420.4
1870 Female, age 42, unknown 418.2
1830 Male, age 51, unknown 398.5
2219 Male, age 76, both hemispheres 359.8
Dorsal raphe nucleus
nTPM: 409.7
2298 Female, age 72, unknown 441.7
2016 Female, age 72, unknown 415.9
2750 Male, age 76, both hemispheres 411.2
1828 Male, age 53, unknown 403.1
2047 Male, age 72, unknown 376.4
Inferior colliculus
nTPM: 372.4
1890 Male, age 53, unknown 401.3
2097 Female, age 72, unknown 373.1
1848 Female, age 42, unknown 364.9
2849 Male, age 72, unknown 350.5
Median raphe nucleus
nTPM: 366.3
2220 Male, age 76, midline 366.3
Periaquaductal grey, anterior
nTPM: 435.4
2502 Female, age 75, unknown 515.4
1795 Male, age 51, unknown 411.8
1947 Male, age 18, unknown 379.1
Periaquaductal grey, dorsal
nTPM: 362.9
1840 Male, age 53, unknown 368.9
1831 Male, age 72, unknown 366.5
2464 Female, age 72, unknown 362.7
2850 Male, age 76, both hemispheres 353.5
Periaquaductal grey, lateral
nTPM: 371.1
2053 Male, age 18, unknown 381.7
2140 Male, age 76, both hemispheres 376.4
2272 Male, age 74, both hemispheres 355.2
Pretectal area
nTPM: 393.1
2007 Male, age 72, unknown 445.4
1817 Female, age 42, unknown 424.8
1815 Male, age 53, unknown 424.7
2316 Male, age 76, right hemisphere 415.6
1816 Male, age 51, unknown 402.3
2825 Male, age 18, unknown 382.5
1944 Female, age 72, unknown 382.4
2224 Female, age 72, unknown 375.7
2407 Male, age 75, both hemispheres 362.2
2273 Male, age 74, both hemispheres 359.9
2667 Female, age 75, unknown 348.3
Red nucleus
nTPM: 464.6
2503 Female, age 72, unknown 565.3
1865 Male, age 51, unknown 495.2
1821 Female, age 72, unknown 487.8
2227 Male, age 72, unknown 481.5
1904 Male, age 53, unknown 480.2
2769 Male, age 72, unknown 472.3
2785 Male, age 18, unknown 460.4
2588 Male, age 74, left hemisphere 454.7
2725 Female, age 75, unknown 443.3
2584 Male, age 75, left hemisphere 431.8
1954 Female, age 42, unknown 415.0
2823 Male, age 76, right hemisphere 387.9
Substantia nigra
nTPM: 463.1
1851 Male, age 51, unknown 559.0
2699 Male, age 18, unknown 539.3
2409 Female, age 72, unknown 538.3
2665 Male, age 74, both hemispheres 492.1
1916 Female, age 42, unknown 490.2
2590 Female, age 75, unknown 449.3
1889 Female, age 72, unknown 430.1
1941 Male, age 53, unknown 382.9
2583 Male, age 75, right hemisphere 375.9
2241 Male, age 72, unknown 374.0
Superior colliculus
nTPM: 419.8
2587 Male, age 74, left hemisphere 493.2
1995 Male, age 72, unknown 491.0
1913 Female, age 42, unknown 474.4
1796 Male, age 53, unknown 432.6
2664 Male, age 75, both hemispheres 425.7
2668 Female, age 75, unknown 417.7
2261 Male, age 18, unknown 389.9
2087 Female, age 72, unknown 376.4
1839 Male, age 51, unknown 370.7
1895 Male, age 76, right hemisphere 326.5
Ventral tegmental area
nTPM: 425.2
1915 Female, age 42, unknown 499.0
2410 Female, age 72, unknown 441.5
2223 Female, age 72, unknown 429.4
2021 Male, age 53, unknown 406.2
1942 Male, age 51, unknown 399.3
2218 Male, age 76, both hemispheres 376.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 834.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 834.4
Samples: 139

Max nTPM: 2454.0
Min nTPM: 323.9
Std nTPM: 303.4
Median nTPM: 787.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2454.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2035.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1779.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1476.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1393.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1365.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1338.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1337.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1290.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1286.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1275.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 445.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 445.9
FF:10158-103A5 76 years, female 445.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 343.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 343.4
Samples: 4

Max nTPM: 440.3
Min nTPM: 296.0
Sample A Female 440.3
Sample B Female 329.3
Sample C Male 296.0
Sample D Male 307.8
Midbrain
nTPM: 333.0
Samples: 4

Max nTPM: 468.3
Min nTPM: 243.4
Sample A Female 468.3
Sample B Female 342.2
Sample C Male 278.2
Sample D Male 243.4
Periaqueductal gray
nTPM: 269.8
Samples: 3

Max nTPM: 295.9
Min nTPM: 240.0
Sample B Female 273.5
Sample C Male 295.9
Sample D Male 240.0
Superior colliculi
nTPM: 338.4
Samples: 4

Max nTPM: 433.7
Min nTPM: 290.7
Sample A Female 433.7
Sample B Female 314.5
Sample C Male 314.5
Sample D Male 290.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 395.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 395.0
Samples: 4

Max nTPM: 495.7
Min nTPM: 330.5
Sample A Male 495.7
Sample B Male 359.5
Sample C Female 330.5
Sample D Female 394.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
74580990 Antisense, RP_060215_02_C09, Mouse strain C57BL/6J (56 days, male) 7.1

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