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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MSN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
52.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
323.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
304.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
298.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
261.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
234.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
223.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
221.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
194.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
169.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
163.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
163.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
147.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
145.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
141.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
140.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
137.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
137.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
137.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
132.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
131.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
131.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
129.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
128.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
126.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
119.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
118.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
114.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
114.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
111.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
108.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
107.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
105.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
103.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
102.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
101.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
100.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
100.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
99.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
98.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
98.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
95.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
94.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
94.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
93.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
92.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
91.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
90.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
90.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
90.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
90.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
89.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
89.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
88.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
86.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
86.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
84.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
83.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
82.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
82.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
82.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
81.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
81.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
80.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
80.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
79.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
78.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
78.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
78.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
78.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
78.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
77.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
76.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
76.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
75.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
74.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
73.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
72.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
72.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
71.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
70.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
70.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
70.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
70.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
69.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
69.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
69.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
68.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
68.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
67.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
67.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
67.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
66.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
66.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
65.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
65.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
65.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
64.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
64.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
64.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
63.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
63.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
63.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
62.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
61.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
61.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
61.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
60.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
59.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
59.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
59.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
58.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
58.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
58.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
58.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
58.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
57.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
57.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
56.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
55.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
55.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
55.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
54.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
54.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
54.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
54.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
53.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
53.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
53.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
53.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
52.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
52.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
51.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
51.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
51.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
51.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
51.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
51.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
51.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
51.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
50.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
49.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
48.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
48.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
47.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
46.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
46.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
46.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
46.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
45.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
45.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
45.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
45.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
45.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
44.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
44.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
43.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
43.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
43.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
43.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
43.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
43.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
43.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
42.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
41.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
41.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
41.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
41.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
41.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
40.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
40.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
40.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
40.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
40.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
39.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
39.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
39.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
39.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
39.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
39.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
38.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
38.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
37.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
37.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
37.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
36.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
35.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
35.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
35.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
35.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
34.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
34.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
34.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
34.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
33.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
33.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
33.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
33.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
32.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
32.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
32.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
31.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
31.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
31.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
30.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
30.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
30.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
29.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
29.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
29.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
29.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
28.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
28.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
28.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
25.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
25.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
23.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
20.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MSN is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
58.6
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
280.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
238.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
199.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
174.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
166.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
163.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
163.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
161.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
158.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
142.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
142.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
140.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
136.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
132.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
131.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
130.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
126.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
122.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
118.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
116.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
115.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
114.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
111.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
110.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
110.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
109.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
108.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
108.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
108.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
107.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
107.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
106.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
104.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
103.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
101.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
100.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
99.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
95.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
95.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
94.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
93.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
92.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
92.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
91.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
91.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
91.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
89.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
84.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
84.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
84.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
83.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
82.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
82.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
81.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
80.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
80.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
80.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
79.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
79.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
79.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
78.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
78.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
75.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
75.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
74.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
73.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
73.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
73.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
71.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
69.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
69.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
69.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
68.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
67.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
66.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
65.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
65.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
65.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
64.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
64.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
63.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
62.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
62.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
61.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
60.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
59.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
59.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
59.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
59.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
58.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
57.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
57.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
57.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
56.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
56.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
55.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
55.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
54.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
54.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
54.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
54.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
54.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
53.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
53.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
52.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
52.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
52.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
51.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
51.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
51.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
50.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
50.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
49.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
49.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
49.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
48.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
48.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
48.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
46.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
46.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
45.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
45.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
44.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
44.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
44.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
43.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
42.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
42.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
42.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
41.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
41.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
40.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
40.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
40.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
40.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
40.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
39.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
39.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
38.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
37.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
37.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
36.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
36.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
36.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
36.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
36.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
36.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
36.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
34.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
33.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
33.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
32.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
31.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
30.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
29.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
28.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
25.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
22.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
0.9
917
Tumor
0.8
557
Tumor
0.8
1015
Tumor
0.7
536
Normal
0.7
137
Tumor
0.6
211
Tumor
0.6
916
Normal
0.6
724
Normal
0.6
327
Tumor
0.6
478
Normal
0.6
525
Tumor
0.5
513
Tumor
0.5
421
Tumor
0.5
978
Normal
0.5
455
Tumor
0.5
498
Normal
0.5
563
Tumor
0.5
861
Tumor
0.5
492
Normal
0.4
913
Tumor
0.4
447
Tumor
0.4
434
Normal
0.4
212
Normal
0.4
444
Normal
0.4
524
Normal
0.4
925
Tumor
0.4
224
Normal
0.4
857
Tumor
0.4
528
Normal
0.4
395
Tumor
0.4
188
Normal
0.4
814
Normal
0.4
192
Normal
0.3
311
Tumor
0.3
1028
Normal
0.3
538
Normal
0.3
778
Normal
0.3
868
Normal
0.3
721
Tumor
0.3
461
Tumor
0.3
268
Normal
0.3
527
Tumor
0.3
852
Normal
0.3
283
Tumor
0.3
952
Normal
0.3
533
Tumor
0.3
415
Tumor
0.3
467
Tumor
0.3
1044
Normal
0.3
943
Tumor
0.3
195
Tumor
0.3
185
Tumor
0.3
262
Normal
0.3
445
Tumor
0.3
813
Tumor
0.3
884
Normal
0.3
661
Tumor
0.3
284
Normal
0.3
968
Normal
0.3
823
Tumor
0.3
874
Normal
0.3
375
Tumor
0.3
627
Tumor
0.3
976
Normal
0.3
918
Normal
0.3
716
Normal
0.3
126
Normal
0.2
966
Normal
0.2
953
Tumor
0.2
741
Tumor
0.2
723
Tumor
0.2
954
Normal
0.2
427
Tumor
0.2
867
Tumor
0.2
365
Tumor
0.2
364
Normal
0.2
558
Normal
0.2
686
Normal
0.2
474
Normal
0.2
984
Normal
0.2
146
Normal
0.2
312
Normal
0.2
514
Normal
0.2
135
Tumor
0.2
383
Tumor
0.2
526
Normal
0.2
355
Tumor
0.2
956
Normal
0.2
866
Normal
0.2
926
Normal
0.2
386
Normal
0.2
431
Tumor
0.2
786
Normal
0.2
1022
Normal
0.2
362
Normal
0.2
816
Normal
0.2
113
Tumor
0.2
573
Tumor
0.2
493
Tumor
0.2
958
Normal
0.2
387
Tumor
0.2
545
Tumor
0.2
881
Tumor
0.1
1013
Tumor
0.1
218
Normal
0.1
922
Normal
0.1
344
Normal
0.1
696
Normal
0.1
728
Normal
0.1
297
Tumor
0.1
697
Tumor
0.1
1042
Normal
0.1
343
Tumor
0.1
384
Normal
0.1
494
Normal
0.1
914
Normal
0.1
124
Normal
0.1
915
Tumor
0.1
231
Tumor
0.1
672
Normal
0.1
328
Normal
0.1
272
Normal
0.1
392
Normal
0.1
1016
Normal
0.1
567
Tumor
0.1
451
Tumor
0.1
663
Tumor
0.1
138
Normal
0.1
1041
Tumor
0.1
416
Normal
0.1
714
Normal
0.1
1014
Normal
0.1
516
Normal
0.1
145
Tumor
0.1
982
Normal
0.1
477
Tumor
0.1
125
Tumor
0.1
367
Tumor
0.1
352
Normal
0.1
824
Normal
0.1
518
Normal
0.1
424
Normal
0.1
662
Normal
0.1
213
Tumor
0.1
738
Normal
0.1
1026
Normal
0.1
136
Normal
0.1
863
Tumor
0.1
981
Tumor
0.1
756
Normal
0.1
223
Tumor
0.1
472
Normal
0.0
722
Normal
0.0
191
Tumor
0.0
432
Normal
0.0
228
Normal
0.0
482
Normal
0.0
161
Tumor
0.0
963
Tumor
0.0
217
Tumor
0.0
468
Normal
0.0
777
Tumor
0.0
616
Normal
0.0
114
Normal
0.0
715
Tumor
0.0
944
Normal
0.0
462
Normal
0.0
363
Tumor
0.0
483
Tumor
0.0
396
Normal
0.0
423
Tumor
0.0
394
Normal
0.0
1046
Normal
0.0
286
Normal
0.0
111
Normal
0.0
448
Normal
0.0
546
Normal
0.0
414
Normal
0.0
366
Normal
0.0
515
Tumor
0.0
617
Tumor
0.0
574
Normal
0.0
628
Normal
0.0
742
Normal
0.0
456
Normal
0.0
924
Normal
0.0
488
Normal
0.0
261
Tumor
0.0
664
Normal
0.0
267
Tumor
0.0
746
Normal
0.0
864
Normal
0.0
491
Tumor
0.0
818
Normal
0.0
882
Normal
0.0
666
Normal
0.0
433
Tumor
0.0
353
Tumor
0.0
142
Normal
0.0
412
Normal
0.0
257
Tumor
0.0
356
Normal
0.0
665
Tumor
-0.1
975
Tumor
-0.1
713
Tumor
-0.1
354
Normal
-0.1
141
Tumor
-0.1
955
Tumor
-0.1
862
Normal
-0.1
368
Normal
-0.1
911
Tumor
-0.1
535
Tumor
-0.1
923
Tumor
-0.1
964
Normal
-0.1
1032
Normal
-0.1
258
Normal
-0.1
172
Normal
-0.1
132
Normal
-0.1
817
Tumor
-0.1
938
Normal
-0.1
446
Normal
-0.1
162
Normal
-0.1
983
Tumor
-0.1
858
Normal
-0.1
187
Tumor
-0.1
376
Normal
-0.1
642
Normal
-0.1
214
Normal
-0.1
428
Normal
-0.1
422
Normal
-0.1
737
Tumor
-0.1
878
Normal
-0.1
232
Normal
-0.1
436
Normal
-0.1
358
Normal
-0.1
148
Normal
-0.1
484
Normal
-0.1
744
Normal
-0.1
278
Normal
-0.2
426
Normal
-0.2
977
Tumor
-0.2
332
Normal
-0.2
883
Tumor
-0.2
912
Normal
-0.2
464
Normal
-0.2
564
Normal
-0.2
572
Normal
-0.2
873
Tumor
-0.2
568
Normal
-0.2
466
Normal
-0.2
351
Tumor
-0.2
554
Normal
-0.2
698
Normal
-0.2
1031
Tumor
-0.2
618
Normal
-0.2
361
Tumor
-0.2
851
Tumor
-0.2
648
Normal
-0.2
481
Tumor
-0.2
388
Normal
-0.2
1045
Tumor
-0.3
534
Normal
-0.3
222
Normal
-0.3
298
Normal
-0.3
636
Normal
-0.3
965
Tumor
-0.3
385
Tumor
-0.3
471
Tumor
-0.3
537
Tumor
-0.3
785
Tumor
-0.3
391
Tumor
-0.3
186
Normal
-0.3
128
Normal
-0.3
957
Tumor
-0.3
452
Normal
-0.3
285
Tumor
-0.4
342
Normal
-0.4
473
Tumor
-0.4
196
Normal
-0.4
755
Tumor
-0.4
127
Tumor
-0.4
314
Normal
-0.4
443
Tumor
-0.4
937
Tumor
-0.4
413
Tumor
-0.4
615
Tumor
-0.4
1043
Tumor
-0.4
465
Tumor
-0.4
553
Tumor
-0.4
1027
Tumor
-0.5
745
Tumor
-0.5
865
Tumor
-0.5
1025
Tumor
-0.5
1021
Tumor
-0.5
463
Tumor
-0.5
671
Tumor
-0.5
277
Tumor
-0.5
647
Tumor
-0.6
487
Tumor
-0.6
921
Tumor
-0.6
497
Tumor
-0.6
131
Tumor
-0.6
331
Tumor
-0.6
727
Tumor
-0.6
523
Tumor
-0.6
171
Tumor
-0.6
123
Tumor
-0.6
357
Tumor
-0.6
641
Tumor
-0.6
271
Tumor
-0.6
517
Tumor
-0.6
341
Tumor
-0.7
221
Tumor
-0.7
227
Tumor
-0.7
967
Tumor
-0.7
393
Tumor
-0.8
147
Tumor
-0.8
313
Tumor
-0.8
815
Tumor
-0.8
112
Tumor
-0.8
425
Tumor
-0.8
411
Tumor
-0.8
951
Tumor
-0.8
695
Tumor
-0.9
571
Tumor
-0.9
635
Tumor
-0.9
877
Tumor
-1.0
743
Tumor
-1.0
435
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
