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                                          • ZMAT2
                                          TISSUE PRIMARY DATA VAGINA Show tissue menu
                                          ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
                                          DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
                                          NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
                                          SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
                                          ANTIBODIES
                                          AND
                                          VALIDATION
                                          Dictionary
                                          Vagina
                                          Tissue proteome
                                          Vagina
                                          Tissue methods
                                          VAGINA - Expression summary
                                          Protein expression
                                          Vaginai

                                          On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                          h
                                          m
                                          l
                                          n
                                          Squamous epithelial cells: Medium
                                          RNA expressioni

                                          A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

                                          Scroll down to view mRNA expression data in more detail.

                                          Consensus:53.1 nTPM
                                          GTEx:53.1 nTPM
                                          FANTOM5:108.9 Scaled Tags Per Million

                                          VAGINA - Antibody stainingi

                                          Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

                                          Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

                                          Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

                                          Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

                                          Antibody HPA036518
                                          Squamous epithelial cells Medium



                                          VAGINA - GTEx RNA-seqi

                                          RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                          Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

                                          Max subtype nTPMi

                                          Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

                                          53.1
                                          GTEx sample id Sample description nTPM
                                          44.651.360.233.783.20102030405060708090
                                          44.651.360.233.783.20102030405060708090
                                          Vagina
                                          Average nTPM: 53.1
                                          Samples: 170

                                          Max nTPM: 95.0
                                          Min nTPM: 33.7
                                          Std nTPM: 11.8
                                          Median nTPM: 51.2
                                          GTEX-132AR-1626-SM-5EGHP 50-59 years, female 95.0
                                          GTEX-14PKU-1326-SM-6871B 40-49 years, female 85.5
                                          GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 84.8
                                          GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 83.7
                                          GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 83.2
                                          GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 82.8
                                          GTEX-14JG6-0726-SM-69LQH 30-39 years, female 82.6
                                          GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 77.7
                                          GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 77.1
                                          GTEX-S341-1226-SM-4AD5S 40-49 years, female 76.6
                                          GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 74.1
                                          GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 73.0
                                          GTEX-11I78-2026-SM-5987C 50-59 years, female 72.7
                                          GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 72.6
                                          GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 71.3
                                          GTEX-ZXES-0626-SM-5E45P 30-39 years, female 70.5
                                          GTEX-S4UY-1026-SM-4AD53 40-49 years, female 68.1
                                          GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 67.9
                                          GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 67.8
                                          GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 67.7
                                          GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 67.6
                                          GTEX-14H4A-2426-SM-664OQ 40-49 years, female 65.8
                                          GTEX-16NGA-1626-SM-72D6M 40-49 years, female 65.0
                                          GTEX-11P81-2126-SM-5HL6N 30-39 years, female 64.9
                                          GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 63.9
                                          GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 63.7
                                          GTEX-14PJ6-1626-SM-6872D 60-69 years, female 63.3
                                          GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 63.2
                                          GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 63.2
                                          GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 63.1
                                          GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 62.9
                                          GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 62.9
                                          GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 62.9
                                          GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 62.6
                                          GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 62.4
                                          GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 62.3
                                          GTEX-1399U-1526-SM-5J2N7 50-59 years, female 62.0
                                          GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 61.8
                                          GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 61.6
                                          GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 61.4
                                          GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 61.0
                                          GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 60.7
                                          GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 60.2
                                          GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 60.0
                                          GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 59.6
                                          GTEX-11DXX-1726-SM-5H11T 60-69 years, female 58.6
                                          GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 58.4
                                          GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 58.3
                                          GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 58.2
                                          GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 57.8
                                          GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 57.7
                                          GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 57.7
                                          GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 57.6
                                          GTEX-QCQG-1226-SM-48U23 50-59 years, female 56.9
                                          GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 56.7
                                          GTEX-PWN1-2526-SM-48TDS 40-49 years, female 56.2
                                          GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 56.1
                                          GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 55.4
                                          GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 55.3
                                          GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 55.2
                                          GTEX-145ME-1426-SM-5RQJS 40-49 years, female 55.1
                                          GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 55.0
                                          GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 54.8
                                          GTEX-131XG-2126-SM-5DUXG 50-59 years, female 54.7
                                          GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 54.6
                                          GTEX-1CAMS-2326-SM-793CR 40-49 years, female 54.3
                                          GTEX-147F3-1526-SM-5MR7L 50-59 years, female 54.2
                                          GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 54.1
                                          GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 53.9
                                          GTEX-1399S-2326-SM-5K7YV 30-39 years, female 53.7
                                          GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 53.7
                                          GTEX-PWCY-1726-SM-48TD3 20-29 years, female 53.7
                                          GTEX-1LGRB-2126-SM-COH48 50-59 years, female 53.3
                                          GTEX-S4P3-1126-SM-4AD52 50-59 years, female 53.3
                                          GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 52.6
                                          GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 52.6
                                          GTEX-183WM-2126-SM-7LG4I 70-79 years, female 52.5
                                          GTEX-146FR-2426-SM-5NQAU 60-69 years, female 52.3
                                          GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 52.0
                                          GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 51.8
                                          GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 51.6
                                          GTEX-PX3G-2526-SM-48TZV 20-29 years, female 51.6
                                          GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 51.6
                                          GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 51.3
                                          GTEX-Q734-1426-SM-DTXFX 40-49 years, female 51.3
                                          GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 51.2
                                          GTEX-14A5I-2726-SM-5MR84 50-59 years, female 51.1
                                          GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 51.0
                                          GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 50.7
                                          GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 50.5
                                          GTEX-13N11-1526-SM-5L3FL 50-59 years, female 50.4
                                          GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 50.4
                                          GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 50.2
                                          GTEX-TML8-1126-SM-4DXSS 40-49 years, female 50.2
                                          GTEX-13D11-1326-SM-5IJFY 50-59 years, female 50.1
                                          GTEX-1117F-2526-SM-5GZY6 60-69 years, female 49.9
                                          GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 49.8
                                          GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 49.6
                                          GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 49.3
                                          GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 49.1
                                          GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 48.9
                                          GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 48.8
                                          GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 48.8
                                          GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 48.5
                                          GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 48.2
                                          GTEX-P4PP-2526-SM-3P61P 30-39 years, female 48.1
                                          GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 47.9
                                          GTEX-RWS6-1726-SM-47JXP 60-69 years, female 47.5
                                          GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 47.1
                                          GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 46.9
                                          GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 46.8
                                          GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 46.2
                                          GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 46.0
                                          GTEX-1C475-0526-SM-793AC 40-49 years, female 45.9
                                          GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 45.8
                                          GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 45.7
                                          GTEX-RU1J-1426-SM-46MUV 20-29 years, female 45.7
                                          GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 45.7
                                          GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 45.6
                                          GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 45.6
                                          GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 45.3
                                          GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 45.2
                                          GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 45.1
                                          GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 44.8
                                          GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 44.8
                                          GTEX-16NPV-2526-SM-6M483 50-59 years, female 44.8
                                          GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 44.7
                                          GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 44.6
                                          GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 44.6
                                          GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 44.5
                                          GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 44.4
                                          GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 44.3
                                          GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 44.1
                                          GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 43.6
                                          GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 43.5
                                          GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 43.4
                                          GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 43.3
                                          GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 43.3
                                          GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 43.2
                                          GTEX-15DYW-2926-SM-6PANA 60-69 years, female 43.1
                                          GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 42.7
                                          GTEX-113JC-1926-SM-5N9GE 50-59 years, female 42.2
                                          GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 42.0
                                          GTEX-RNOR-2526-SM-F21KT 50-59 years, female 41.5
                                          GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 41.1
                                          GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 40.9
                                          GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 40.7
                                          GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 40.6
                                          GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 40.5
                                          GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 40.5
                                          GTEX-QDT8-2526-SM-48TYX 30-39 years, female 39.9
                                          GTEX-131YS-2426-SM-5J2OD 60-69 years, female 39.8
                                          GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 39.8
                                          GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 39.4
                                          GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 39.1
                                          GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 38.8
                                          GTEX-145LS-2526-SM-5TDC9 60-69 years, female 38.3
                                          GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 38.2
                                          GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 37.9
                                          GTEX-T2IS-1926-SM-4DM74 20-29 years, female 37.7
                                          GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 37.5
                                          GTEX-14PJM-2926-SM-69LOE 50-59 years, female 37.4
                                          GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 37.1
                                          GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 35.8
                                          GTEX-11TTK-2726-SM-5GU58 60-69 years, female 35.4
                                          GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 35.4
                                          GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 35.3
                                          GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 34.7
                                          GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 33.9
                                          GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 33.7
                                          Show allShow less

                                          VAGINA - FANTOM5 CAGEi

                                          RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                          Max subtype Scaled Tags Per Millioni

                                          Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

                                          108.9
                                          FANTOM5 sample id Sample description Scaled Tags Per Million
                                          Vagina
                                          Scaled Tags Per Million: 108.9
                                          FF:10204-103F6 68 years, female 108.9

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