MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.8 nTPM
HPA Brain:62.7 nTPM
GTEx:59.8 nTPM
FANTOM5:52.2 Scaled Tags Per Million
Pig:33.9 nTPM
Mouse:106.2 nTPM
Allen mouse:3.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells0510152025nCPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.5
1827 Male, age 72, unknown 54.7
2666 Male, age 74, left hemisphere 53.8
2828 Female, age 72, unknown 47.2
1833 Male, age 53, unknown 47.1
1870 Female, age 42, unknown 46.1
2411 Female, age 72, unknown 45.2
2219 Male, age 76, both hemispheres 45.0
1830 Male, age 51, unknown 43.3
2019 Male, age 18, unknown 41.3
2586 Male, age 75, left hemisphere 40.9
Dorsal raphe nucleus
nTPM: 48.1
2298 Female, age 72, unknown 54.3
1828 Male, age 53, unknown 48.7
2047 Male, age 72, unknown 48.6
2750 Male, age 76, both hemispheres 48.3
2016 Female, age 72, unknown 40.9
Inferior colliculus
nTPM: 47.4
2849 Male, age 72, unknown 52.3
2097 Female, age 72, unknown 48.6
1890 Male, age 53, unknown 45.0
1848 Female, age 42, unknown 43.9
Median raphe nucleus
nTPM: 62.7
2220 Male, age 76, midline 62.7
Periaquaductal grey, anterior
nTPM: 46.5
1947 Male, age 18, unknown 50.2
1795 Male, age 51, unknown 44.8
2502 Female, age 75, unknown 44.4
Periaquaductal grey, dorsal
nTPM: 46.6
2850 Male, age 76, both hemispheres 53.7
1840 Male, age 53, unknown 46.5
2464 Female, age 72, unknown 46.2
1831 Male, age 72, unknown 40.1
Periaquaductal grey, lateral
nTPM: 42.7
2272 Male, age 74, both hemispheres 44.6
2140 Male, age 76, both hemispheres 43.5
2053 Male, age 18, unknown 40.1
Pretectal area
nTPM: 49.0
1816 Male, age 51, unknown 58.2
1817 Female, age 42, unknown 56.7
1815 Male, age 53, unknown 50.3
2825 Male, age 18, unknown 50.3
2007 Male, age 72, unknown 49.8
2224 Female, age 72, unknown 48.5
2667 Female, age 75, unknown 48.3
1944 Female, age 72, unknown 46.6
2273 Male, age 74, both hemispheres 46.1
2316 Male, age 76, right hemisphere 43.4
2407 Male, age 75, both hemispheres 40.6
Red nucleus
nTPM: 43.6
2725 Female, age 75, unknown 52.0
2588 Male, age 74, left hemisphere 50.7
1821 Female, age 72, unknown 50.3
2503 Female, age 72, unknown 43.3
2227 Male, age 72, unknown 42.2
1954 Female, age 42, unknown 42.0
2584 Male, age 75, left hemisphere 42.0
1865 Male, age 51, unknown 41.3
2785 Male, age 18, unknown 41.3
2823 Male, age 76, right hemisphere 40.8
2769 Male, age 72, unknown 39.4
1904 Male, age 53, unknown 38.3
Substantia nigra
nTPM: 51.0
1916 Female, age 42, unknown 59.9
2241 Male, age 72, unknown 58.7
1941 Male, age 53, unknown 55.6
2699 Male, age 18, unknown 53.0
1851 Male, age 51, unknown 51.2
2665 Male, age 74, both hemispheres 49.3
1889 Female, age 72, unknown 48.6
2409 Female, age 72, unknown 46.6
2590 Female, age 75, unknown 46.1
2583 Male, age 75, right hemisphere 40.7
Superior colliculus
nTPM: 44.6
1796 Male, age 53, unknown 49.0
2587 Male, age 74, left hemisphere 48.2
2261 Male, age 18, unknown 47.8
1839 Male, age 51, unknown 46.9
1895 Male, age 76, right hemisphere 44.4
2087 Female, age 72, unknown 44.1
2664 Male, age 75, both hemispheres 43.4
2668 Female, age 75, unknown 43.1
1913 Female, age 42, unknown 42.2
1995 Male, age 72, unknown 37.0
Ventral tegmental area
nTPM: 49.6
2223 Female, age 72, unknown 56.8
1915 Female, age 42, unknown 52.7
2218 Male, age 76, both hemispheres 50.0
2410 Female, age 72, unknown 47.5
2021 Male, age 53, unknown 45.5
1942 Male, age 51, unknown 45.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 59.8
GTEx sample id Sample description nTPM
51.757.566.136.784.70102030405060708090100110120
Brain - Substantia nigra
Average nTPM: 59.8
Samples: 183

Max nTPM: 123.4
Min nTPM: 36.7
Std nTPM: 11.8
Median nTPM: 57.5
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 123.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 101.0
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 99.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 94.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 90.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 89.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 84.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 81.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 81.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 78.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 76.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.2
FF:10158-103A5 76 years, female 52.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 33.9
Pig sample Sample description nTPM
27.831.134.525.537.605101520253035
 		Substantia nigra
nTPM: 31.3
Samples: 4

Max nTPM: 37.6
Min nTPM: 25.5
Sample A Female 37.6
Sample B Female 28.6
Sample C Male 33.5
Sample D Male 25.5
Midbrain
nTPM: 33.4
Samples: 4

Max nTPM: 34.7
Min nTPM: 31.5
Sample A Female 31.5
Sample B Female 32.9
Sample C Male 34.4
Sample D Male 34.7
Periaqueductal gray
nTPM: 31.6
Samples: 3

Max nTPM: 33.9
Min nTPM: 29.9
Sample B Female 31.1
Sample C Male 33.9
Sample D Male 29.9
32.136.338.223.939.105101520253035
 		Superior colliculi
nTPM: 33.9
Samples: 4

Max nTPM: 39.1
Min nTPM: 23.9
Sample A Female 39.1
Sample B Female 23.9
Sample C Male 37.9
Sample D Male 34.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 106.2
Mouse sample Sample description nTPM
104.1106.8108.9101.3110.00102030405060708090100110
 		Midbrain
nTPM: 106.2
Samples: 4

Max nTPM: 110.0
Min nTPM: 101.3
Sample A Male 105.0
Sample B Male 110.0
Sample C Female 108.6
Sample D Female 101.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
69080733 Antisense, RP_050324_02_D02, Mouse strain C57BL/6J (56 days, male) 3.0

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