HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:68.0 nTPM
HPA Brain:63.9 nTPM
GTEx:68.0 nTPM
FANTOM5:176.8 Scaled Tags Per Million
Pig:44.0 nTPM
Mouse:154.8 nTPM
Allen mouse:6.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells0510152025nCPM

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036518
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 63.9
Sample id Sample description nTPM
Hippocampus
nTPM: 56.4
2621 Female, age 67, right hemisphere 65.3
1898 Male, age 80, left hemisphere 63.6
2148 Female, age 91, left hemisphere 57.0
1855 Male, age 76, left hemisphere 55.1
2529 Female, age 94, left hemisphere 53.3
1911 Female, age 85, right hemisphere 44.2
Dentate gyrus
nTPM: 54.6
2246 Female, age 85, both hemispheres 61.8
2010 Male, age 76, both hemispheres 61.2
1927 Female, age 91, both hemispheres 59.4
2530 Female, age 94, left hemisphere 54.9
2531 Female, age 67, both hemispheres 48.3
2528 Male, age 74, both hemispheres 42.3
Entorhinal gyrus
nTPM: 51.4
1938 Female, age 85, left hemisphere 57.3
1787 Male, age 76, left hemisphere 56.1
2764 Male, age 80, right hemisphere 53.8
2613 Female, age 94, left hemisphere 51.8
2686 Male, age 75, right hemisphere 47.6
2117 Female, age 91, right hemisphere 41.7
Hippocampus, CA1
nTPM: 60.8
2749 Male, age 80, left hemisphere 89.1
2045 Male, age 76, both hemispheres 59.4
1873 Female, age 85, both hemispheres 57.0
2527 Male, age 74, both hemispheres 53.8
2082 Female, age 91, right hemisphere 44.6
Hippocampus, CA2
nTPM: 57.3
1892 Male, age 76, both hemispheres 72.9
1963 Male, age 80, left hemisphere 64.3
2249 Male, age 74, both hemispheres 55.2
1940 Female, age 85, left hemisphere 54.5
2113 Female, age 91, right hemisphere 49.4
2437 Female, age 94, left hemisphere 47.4
Hippocampus, CA3
nTPM: 55.5
2137 Male, age 80, left hemisphere 78.4
1867 Male, age 76, both hemispheres 58.5
2620 Female, age 94, left hemisphere 52.7
2436 Male, age 74, both hemispheres 49.5
1891 Female, age 85, both hemispheres 49.0
2861 Female, age 67, both hemispheres 44.9
Parahippocampal cortex
nTPM: 55.6
2245 Female, age 91, both hemispheres 70.5
1850 Male, age 80, both hemispheres 67.1
2532 Female, age 72, left hemisphere 60.9
2250 Female, age 67, right hemisphere 55.4
2018 Male, age 76, both hemispheres 54.6
1933 Female, age 85, both hemispheres 54.1
2693 Female, age 94, both hemispheres 51.8
2622 Female, age 67, right hemisphere 50.0
1990 Female, age 91, right hemisphere 48.5
2692 Male, age 74, both hemispheres 43.3
Perirhinal gyrus
nTPM: 63.9
1794 Male, age 80, right hemisphere 70.0
2848 Male, age 76, right hemisphere 64.3
2521 Female, age 94, right hemisphere 63.7
1847 Female, age 91, left hemisphere 61.2
1841 Female, age 85, right hemisphere 60.3
Subiculum
nTPM: 49.8
1977 Female, age 85, both hemispheres 54.0
1901 Male, age 80, both hemispheres 52.1
2042 Male, age 76, both hemispheres 51.5
2619 Male, age 74, both hemispheres 50.4
2438 Female, age 94, left hemisphere 47.7
2729 Female, age 91, right hemisphere 43.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 68.0
GTEx sample id Sample description nTPM
54.763.279.338.0115.10102030405060708090100110120
Brain - Hippocampus
Average nTPM: 68.0
Samples: 255

Max nTPM: 123.8
Min nTPM: 38.0
Std nTPM: 17.8
Median nTPM: 63.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 123.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 123.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 120.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 120.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 119.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 118.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 117.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 115.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 114.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 109.4
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 108.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 176.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 176.8
FF:10169-103B7 60 years, female 279.3
FF:10153-102I9 76 years, female 74.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 44.0
Pig sample Sample description nTPM
33.834.135.533.034.105101520253035
 		Subiculum
nTPM: 35.3
Samples: 4

Max nTPM: 39.9
Min nTPM: 33.0
Sample A Female 39.9
Sample B Female 34.1
Sample C Male 34.1
Sample D Male 33.0
39.541.546.039.353.705101520253035404550
 		Dorsal hippocampus
nTPM: 44.0
Samples: 4

Max nTPM: 53.7
Min nTPM: 39.3
Sample A Female 53.7
Sample B Female 43.4
Sample C Male 39.5
Sample D Male 39.3
35.937.338.935.540.00510152025303540
 		Entorhinal cortex
nTPM: 37.5
Samples: 4

Max nTPM: 40.0
Min nTPM: 35.5
Sample A Female 40.0
Sample B Female 38.5
Sample C Male 36.0
Sample D Male 35.5
35.439.042.331.545.0051015202530354045
 		Ventral hippocampus
nTPM: 38.7
Samples: 4

Max nTPM: 45.0
Min nTPM: 31.5
Sample A Female 45.0
Sample B Female 31.5
Sample C Male 36.7
Sample D Male 41.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 154.8
Mouse sample Sample description nTPM
144.9146.8149.2143.8152.2020406080100120140
 		Entorhinal cortex
nTPM: 147.4
Samples: 4

Max nTPM: 152.2
Min nTPM: 143.8
Sample A Male 143.8
Sample B Male 148.2
Sample C Female 145.3
Sample D Female 152.2
148.9156.9162.8134.1171.1020406080100120140160
 		Hippocampal formation
nTPM: 154.8
Samples: 4

Max nTPM: 171.1
Min nTPM: 134.1
Sample A Male 160.1
Sample B Male 153.8
Sample C Female 171.1
Sample D Female 134.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 6.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.8
69080733 Antisense, RP_050324_02_D02, Mouse strain C57BL/6J (56 days, male) 6.8

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