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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1304.0
nTPM
HPA Brain:
815.9
nTPM
GTEx:
1304.0
nTPM
FANTOM5:
1276.0
Scaled Tags Per Million
Pig:
1506.1
nTPM
Mouse:
3247.6
nTPM
Allen mouse:
19.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA044999
Antibody CAB007790
Glial cells
Not detected
Low
Neuronal cells
Medium
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
815.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 707.2
1898
Male, age 80, left hemisphere
982.2
1911
Female, age 85, right hemisphere
743.0
1855
Male, age 76, left hemisphere
670.7
2621
Female, age 67, right hemisphere
653.0
2529
Female, age 94, left hemisphere
634.6
2148
Female, age 91, left hemisphere
559.4
Dentate gyrus nTPM: 658.5
1927
Female, age 91, both hemispheres
812.5
2530
Female, age 94, left hemisphere
750.2
2010
Male, age 76, both hemispheres
733.5
2246
Female, age 85, both hemispheres
632.4
2528
Male, age 74, both hemispheres
564.0
2531
Female, age 67, both hemispheres
458.6
Entorhinal gyrus nTPM: 654.6
1938
Female, age 85, left hemisphere
903.4
2764
Male, age 80, right hemisphere
690.5
1787
Male, age 76, left hemisphere
672.8
2117
Female, age 91, right hemisphere
594.0
2613
Female, age 94, left hemisphere
567.8
2686
Male, age 75, right hemisphere
498.9
Hippocampus, CA1 nTPM: 815.9
2749
Male, age 80, left hemisphere
1445.1
1873
Female, age 85, both hemispheres
819.6
2527
Male, age 74, both hemispheres
671.6
2045
Male, age 76, both hemispheres
595.8
2082
Female, age 91, right hemisphere
547.4
Hippocampus, CA2 nTPM: 751.8
1963
Male, age 80, left hemisphere
945.8
1892
Male, age 76, both hemispheres
941.8
2249
Male, age 74, both hemispheres
784.1
1940
Female, age 85, left hemisphere
726.5
2113
Female, age 91, right hemisphere
570.5
2437
Female, age 94, left hemisphere
541.9
Hippocampus, CA3 nTPM: 713.2
2137
Male, age 80, left hemisphere
1191.4
1867
Male, age 76, both hemispheres
832.6
1891
Female, age 85, both hemispheres
745.9
2436
Male, age 74, both hemispheres
621.5
2620
Female, age 94, left hemisphere
479.0
2861
Female, age 67, both hemispheres
408.9
Parahippocampal cortex nTPM: 674.0
1850
Male, age 80, both hemispheres
984.5
1933
Female, age 85, both hemispheres
794.3
1990
Female, age 91, right hemisphere
752.4
2245
Female, age 91, both hemispheres
702.4
2250
Female, age 67, right hemisphere
641.7
2532
Female, age 72, left hemisphere
628.8
2018
Male, age 76, both hemispheres
618.0
2693
Female, age 94, both hemispheres
607.5
2692
Male, age 74, both hemispheres
560.6
2622
Female, age 67, right hemisphere
449.6
Perirhinal gyrus nTPM: 803.7
1841
Female, age 85, right hemisphere
932.4
1847
Female, age 91, left hemisphere
923.9
1794
Male, age 80, right hemisphere
802.2
2521
Female, age 94, right hemisphere
704.2
2848
Male, age 76, right hemisphere
655.7
Subiculum nTPM: 665.2
1901
Male, age 80, both hemispheres
935.5
2042
Male, age 76, both hemispheres
733.8
1977
Female, age 85, both hemispheres
714.6
2438
Female, age 94, left hemisphere
592.2
2619
Male, age 74, both hemispheres
550.6
2729
Female, age 91, right hemisphere
464.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1304.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 1304.0
Samples: 197
Max nTPM: 2754.1
Min nTPM: 439.1
Std nTPM: 381.5
Median nTPM: 1204.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
2754.1
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
2287.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
2202.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
2185.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
2161.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
2135.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
2133.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
2107.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
2101.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
2056.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
2045.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
2038.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
1977.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
1973.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
1949.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
1924.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
1905.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
1896.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
1862.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
1849.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
1843.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
1808.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
1806.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
1804.1
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
1802.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
1801.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
1773.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
1766.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
1750.1
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
1720.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
1714.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
1690.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
1687.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
1681.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
1678.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
1669.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
1661.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
1641.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
1637.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
1634.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
1624.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
1619.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
1593.3
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
1592.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
1583.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
1583.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
1578.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
1570.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
1549.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
1533.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
1530.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
1527.1
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
1517.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
1509.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
1485.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
1480.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
1479.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
1466.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
1466.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
1456.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
1454.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
1453.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
1439.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
1435.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
1435.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
1428.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
1407.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
1407.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
1377.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
1359.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
1357.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
1357.0
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
1355.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
1346.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
1345.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
1344.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
1327.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
1316.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
1302.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
1301.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
1300.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
1294.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
1291.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
1290.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
1290.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
1283.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
1283.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
1276.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
1268.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
1260.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
1257.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
1256.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
1255.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
1254.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
1253.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
1239.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
1215.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
1205.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
1204.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
1203.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
1201.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
1200.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
1197.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
1195.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
1189.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
1185.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
1185.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
1183.4
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
1181.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
1179.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
1168.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
1163.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
1162.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
1161.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
1161.1
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
1158.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
1157.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
1142.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
1139.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
1136.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
1134.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
1132.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
1128.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
1127.2
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
1124.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
1123.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
1123.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
1116.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
1115.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
1111.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
1108.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
1099.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
1097.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
1096.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
1079.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
1078.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
1077.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
1064.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
1059.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
1058.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
1051.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
1044.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
1042.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
1041.6
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
1027.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
1018.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
1015.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
1014.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
1010.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
1008.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
998.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
994.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
992.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
986.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
985.7
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
984.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
984.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
983.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
983.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
978.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
960.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
956.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
951.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
950.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
947.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
946.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
945.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
944.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
941.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
936.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
933.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
928.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
925.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
918.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
908.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
888.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
876.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
875.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
872.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
863.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
858.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
853.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
851.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
850.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
848.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
827.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
826.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
815.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
815.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
814.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
808.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
791.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
772.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
749.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
742.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
479.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
439.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3247.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 2930.7
Samples: 4
Max nTPM: 3144.8
Min nTPM: 2802.5
Sample A
Male
2802.5
Sample B
Male
3144.8
Sample C
Female
2969.0
Sample D
Female
2806.6
Hippocampal formation nTPM: 3247.6
Samples: 4
Max nTPM: 3696.8
Min nTPM: 2796.7
Sample A
Male
3696.8
Sample B
Male
3230.4
Sample C
Female
3266.6
Sample D
Female
2796.7
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.