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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
S100A8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1954.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
472.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
465.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
362.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
220.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
201.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
133.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
127.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
119.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
113.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
92.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
86.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
80.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
79.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
77.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
75.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
67.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
62.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
49.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
42.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
41.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
39.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
36.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
36.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
35.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
33.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
33.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
31.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
31.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
29.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
27.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
S100A8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.5
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
2621.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1037.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
215.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
175.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
127.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
126.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
112.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
101.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
99.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
89.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
78.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
72.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
66.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
49.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
47.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
44.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
42.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
39.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
33.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
31.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
30.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
491
Tumor
4.1
917
Tumor
3.8
311
Tumor
3.0
125
Tumor
2.8
283
Tumor
2.7
328
Normal
2.0
343
Tumor
1.9
697
Tumor
1.8
467
Tumor
1.8
447
Tumor
1.5
195
Tumor
1.5
938
Normal
1.4
877
Tumor
1.4
395
Tumor
1.4
545
Tumor
1.3
816
Normal
1.3
375
Tumor
1.2
778
Normal
1.2
916
Normal
1.2
671
Tumor
1.2
217
Tumor
1.1
536
Normal
1.1
823
Tumor
1.1
1016
Normal
1.0
538
Normal
0.9
943
Tumor
0.9
478
Normal
0.9
385
Tumor
0.8
982
Normal
0.8
268
Normal
0.8
713
Tumor
0.8
351
Tumor
0.8
498
Normal
0.8
966
Normal
0.8
257
Tumor
0.8
428
Normal
0.7
223
Tumor
0.7
332
Normal
0.7
488
Normal
0.7
815
Tumor
0.7
1026
Normal
0.7
976
Normal
0.6
535
Tumor
0.6
882
Normal
0.6
963
Tumor
0.5
525
Tumor
0.5
722
Normal
0.5
926
Normal
0.5
524
Normal
0.5
573
Tumor
0.4
224
Normal
0.4
272
Normal
0.4
262
Normal
0.4
482
Normal
0.4
352
Normal
0.4
284
Normal
0.4
636
Normal
0.4
978
Normal
0.3
331
Tumor
0.3
444
Normal
0.3
878
Normal
0.3
364
Normal
0.3
983
Tumor
0.3
1014
Normal
0.2
464
Normal
0.2
424
Normal
0.2
884
Normal
0.2
211
Tumor
0.2
494
Normal
0.2
394
Normal
0.2
191
Tumor
0.2
666
Normal
0.2
518
Normal
0.2
984
Normal
0.2
662
Normal
0.2
492
Normal
0.2
526
Normal
0.2
192
Normal
0.1
866
Normal
0.1
358
Normal
0.1
824
Normal
0.1
534
Normal
0.1
954
Normal
0.1
851
Tumor
0.0
813
Tumor
0.0
716
Normal
0.0
145
Tumor
0.0
213
Tumor
0.0
1044
Normal
0.0
952
Normal
0.0
957
Tumor
0.0
698
Normal
0.0
342
Normal
0.0
472
Normal
0.0
455
Tumor
0.0
196
Normal
-0.1
414
Normal
-0.1
356
Normal
-0.1
858
Normal
-0.1
686
Normal
-0.1
964
Normal
-0.1
228
Normal
-0.1
744
Normal
-0.1
648
Normal
-0.1
918
Normal
-0.2
384
Normal
-0.2
126
Normal
-0.2
1028
Normal
-0.2
344
Normal
-0.2
546
Normal
-0.2
312
Normal
-0.2
956
Normal
-0.2
432
Normal
-0.2
185
Tumor
-0.2
422
Normal
-0.3
661
Tumor
-0.3
968
Normal
-0.3
396
Normal
-0.3
558
Normal
-0.3
142
Normal
-0.3
852
Normal
-0.3
944
Normal
-0.3
1042
Normal
-0.3
714
Normal
-0.3
138
Normal
-0.3
463
Tumor
-0.3
298
Normal
-0.3
814
Normal
-0.3
487
Tumor
-0.3
386
Normal
-0.3
497
Tumor
-0.3
383
Tumor
-0.3
286
Normal
-0.3
628
Normal
-0.4
937
Tumor
-0.4
222
Normal
-0.4
672
Normal
-0.4
554
Normal
-0.4
297
Tumor
-0.4
537
Tumor
-0.4
862
Normal
-0.4
481
Tumor
-0.4
314
Normal
-0.5
528
Normal
-0.5
618
Normal
-0.5
955
Tumor
-0.5
527
Tumor
-0.5
568
Normal
-0.5
366
Normal
-0.5
922
Normal
-0.5
313
Tumor
-0.5
721
Tumor
-0.5
232
Normal
-0.5
434
Normal
-0.5
261
Tumor
-0.5
874
Normal
-0.5
124
Normal
-0.6
664
Normal
-0.6
474
Normal
-0.6
868
Normal
-0.6
912
Normal
-0.6
924
Normal
-0.6
723
Tumor
-0.6
212
Normal
-0.6
1043
Tumor
-0.6
392
Normal
-0.6
446
Normal
-0.6
132
Normal
-0.6
574
Normal
-0.6
413
Tumor
-0.6
696
Normal
-0.6
567
Tumor
-0.6
354
Normal
-0.6
786
Normal
-0.6
958
Normal
-0.7
642
Normal
-0.7
128
Normal
-0.7
818
Normal
-0.7
218
Normal
-0.7
391
Tumor
-0.7
881
Tumor
-0.7
817
Tumor
-0.7
738
Normal
-0.7
864
Normal
-0.7
484
Normal
-0.7
162
Normal
-0.7
367
Tumor
-0.7
425
Tumor
-0.7
1046
Normal
-0.7
136
Normal
-0.7
466
Normal
-0.7
426
Normal
-0.7
456
Normal
-0.8
111
Normal
-0.8
857
Tumor
-0.8
727
Tumor
-0.8
665
Tumor
-0.8
746
Normal
-0.8
468
Normal
-0.8
564
Normal
-0.9
685
Tumor
-0.9
755
Tumor
-0.9
187
Tumor
-0.9
915
Tumor
-0.9
376
Normal
-0.9
448
Normal
-0.9
462
Normal
-0.9
914
Normal
-0.9
563
Tumor
-0.9
353
Tumor
-0.9
355
Tumor
-0.9
427
Tumor
-0.9
923
Tumor
-0.9
188
Normal
-1.0
873
Tumor
-1.0
516
Normal
-1.0
737
Tumor
-1.0
742
Normal
-1.0
1032
Normal
-1.0
412
Normal
-1.0
967
Tumor
-1.0
1022
Normal
-1.0
728
Normal
-1.0
617
Tumor
-1.0
493
Tumor
-1.0
161
Tumor
-1.1
186
Normal
-1.1
278
Normal
-1.1
553
Tumor
-1.1
471
Tumor
-1.1
227
Tumor
-1.1
452
Normal
-1.1
214
Normal
-1.1
883
Tumor
-1.1
514
Normal
-1.1
861
Tumor
-1.1
148
Normal
-1.1
572
Normal
-1.1
635
Tumor
-1.1
146
Normal
-1.2
114
Normal
-1.2
421
Tumor
-1.2
137
Tumor
-1.2
756
Normal
-1.2
141
Tumor
-1.2
431
Tumor
-1.2
867
Tumor
-1.2
135
Tumor
-1.2
483
Tumor
-1.2
365
Tumor
-1.2
953
Tumor
-1.2
523
Tumor
-1.2
123
Tumor
-1.3
1025
Tumor
-1.3
258
Normal
-1.3
715
Tumor
-1.3
415
Tumor
-1.3
327
Tumor
-1.3
461
Tumor
-1.3
277
Tumor
-1.3
388
Normal
-1.3
285
Tumor
-1.3
362
Normal
-1.3
368
Normal
-1.4
785
Tumor
-1.4
965
Tumor
-1.4
865
Tumor
-1.4
363
Tumor
-1.4
513
Tumor
-1.4
221
Tumor
-1.4
416
Normal
-1.4
921
Tumor
-1.4
616
Normal
-1.4
981
Tumor
-1.5
777
Tumor
-1.5
127
Tumor
-1.5
977
Tumor
-1.5
724
Normal
-1.5
443
Tumor
-1.6
436
Normal
-1.6
341
Tumor
-1.6
433
Tumor
-1.6
393
Tumor
-1.6
1045
Tumor
-1.7
517
Tumor
-1.7
913
Tumor
-1.7
271
Tumor
-1.7
361
Tumor
-1.7
465
Tumor
-1.7
113
Tumor
-1.7
451
Tumor
-1.8
423
Tumor
-1.8
172
Normal
-1.8
925
Tumor
-1.8
695
Tumor
-1.8
557
Tumor
-1.8
975
Tumor
-1.9
663
Tumor
-1.9
1015
Tumor
-1.9
863
Tumor
-2.0
477
Tumor
-2.0
112
Tumor
-2.0
533
Tumor
-2.0
1013
Tumor
-2.0
951
Tumor
-2.0
743
Tumor
-2.0
387
Tumor
-2.0
615
Tumor
-2.1
1031
Tumor
-2.1
357
Tumor
-2.1
515
Tumor
-2.1
131
Tumor
-2.1
745
Tumor
-2.1
411
Tumor
-2.1
1041
Tumor
-2.2
641
Tumor
-2.2
571
Tumor
-2.3
1021
Tumor
-2.3
267
Tumor
-2.3
473
Tumor
-2.3
627
Tumor
-2.4
171
Tumor
-2.4
911
Tumor
-2.4
647
Tumor
-2.4
147
Tumor
-2.4
231
Tumor
-2.5
1027
Tumor
-2.5
435
Tumor
-2.7
445
Tumor
-3.0
741
Tumor
-3.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
