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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PGD is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
441.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
391.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
355.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
337.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
250.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
230.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
215.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
213.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
200.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
192.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
179.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
171.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
162.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
158.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
149.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
149.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
148.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
145.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
143.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
141.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
140.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
138.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
130.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
124.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
123.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
122.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
112.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
112.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
112.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
112.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
110.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
108.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
108.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
108.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
107.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
107.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
106.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
103.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
102.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
101.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
99.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
97.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
97.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
95.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
95.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
95.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
94.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
93.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
91.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
89.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
89.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
89.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
88.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
87.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
87.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
85.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
84.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
84.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
83.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
83.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
82.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
81.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
81.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
81.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
79.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
78.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
78.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
77.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
77.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
75.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
75.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
74.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
74.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
74.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
74.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
73.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
73.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
73.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
73.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
72.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
71.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
71.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
71.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
71.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
69.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
69.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
69.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
68.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
68.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
67.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
67.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
67.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
67.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
65.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
65.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
65.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
65.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
64.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
63.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
63.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
63.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
63.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
63.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
61.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
61.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
61.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
61.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
61.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
61.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
61.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
60.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
60.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
60.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
60.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
60.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
60.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
58.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
58.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
57.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
57.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
57.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
57.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
57.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
56.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
56.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
56.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
56.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
56.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
55.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
55.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
55.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
55.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
55.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
54.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
54.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
53.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
52.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
52.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
52.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
52.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
51.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
51.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
51.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
51.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
51.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
50.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
50.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
50.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
50.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
49.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
49.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
48.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
48.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
48.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
48.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
48.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
48.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
47.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
47.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
47.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
47.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
47.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
47.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
46.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
46.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
46.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
46.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
46.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
46.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
46.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
46.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
46.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
45.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
45.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
45.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
45.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
44.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
44.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
44.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
44.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
44.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
44.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
44.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
44.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
43.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
43.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
43.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
42.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
42.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
42.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
41.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
41.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
41.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
41.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
40.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
39.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
39.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
39.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
39.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
39.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
39.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
39.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
39.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
38.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
38.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
38.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
38.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
37.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
37.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
37.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
36.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
36.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
36.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
36.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
36.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
36.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
36.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
36.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
36.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
36.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
35.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
35.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
34.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
34.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
34.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
34.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
33.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
32.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
32.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
32.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
32.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
31.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
31.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
30.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
30.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
30.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
30.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
30.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
30.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
30.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
30.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
30.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
29.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
29.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
29.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
29.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
29.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
28.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
28.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
28.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
27.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
27.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
26.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
26.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
25.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
24.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
23.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
23.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
22.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
16.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PGD is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
55.6
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
483.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
393.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
355.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
278.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
233.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
194.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
192.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
190.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
181.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
179.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
162.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
154.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
140.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
130.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
128.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
120.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
120.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
117.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
113.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
111.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
109.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
107.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
106.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
105.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
104.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
102.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
99.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
97.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
96.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
95.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
94.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
94.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
92.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
91.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
86.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
85.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
85.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
83.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
83.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
83.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
82.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
81.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
81.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
78.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
78.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
75.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
73.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
73.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
73.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
71.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
71.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
71.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
70.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
70.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
70.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
69.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
69.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
68.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
68.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
65.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
65.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
65.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
63.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
63.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
63.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
62.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
62.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
61.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
60.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
60.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
59.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
57.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
54.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
54.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
54.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
54.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
53.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
53.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
53.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
52.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
51.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
51.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
50.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
48.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
48.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
48.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
48.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
47.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
47.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
46.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
46.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
46.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
46.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
45.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
44.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
43.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
43.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
43.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
42.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
42.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
42.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
41.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
41.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
40.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
40.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
40.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
39.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
39.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
38.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
38.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
37.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
37.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
37.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
37.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
37.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
36.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
36.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
36.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
35.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
35.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
34.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
34.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
34.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
32.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
31.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
30.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
30.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
30.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
28.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
26.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
26.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
24.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
23.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
573
Tumor
2.0
267
Tumor
1.4
567
Tumor
1.3
491
Tumor
0.8
525
Tumor
0.6
727
Tumor
0.5
283
Tumor
0.5
571
Tumor
0.5
1041
Tumor
0.5
257
Tumor
0.4
966
Normal
0.4
387
Tumor
0.4
518
Normal
0.4
738
Normal
0.4
746
Normal
0.4
452
Normal
0.3
125
Tumor
0.3
361
Tumor
0.3
228
Normal
0.3
537
Tumor
0.3
462
Normal
0.3
161
Tumor
0.3
513
Tumor
0.3
172
Normal
0.3
1013
Tumor
0.3
713
Tumor
0.3
756
Normal
0.3
695
Tumor
0.3
737
Tumor
0.3
413
Tumor
0.3
1026
Normal
0.3
414
Normal
0.3
222
Normal
0.3
327
Tumor
0.3
816
Normal
0.3
917
Tumor
0.3
952
Normal
0.3
272
Normal
0.3
375
Tumor
0.3
472
Normal
0.3
956
Normal
0.3
313
Tumor
0.3
663
Tumor
0.3
723
Tumor
0.2
728
Normal
0.2
982
Normal
0.2
864
Normal
0.2
1016
Normal
0.2
298
Normal
0.2
436
Normal
0.2
425
Tumor
0.2
113
Tumor
0.2
416
Normal
0.2
135
Tumor
0.2
722
Normal
0.2
778
Normal
0.2
432
Normal
0.2
1042
Normal
0.2
955
Tumor
0.2
358
Normal
0.2
1022
Normal
0.2
474
Normal
0.2
132
Normal
0.2
136
Normal
0.2
882
Normal
0.2
564
Normal
0.2
394
Normal
0.2
926
Normal
0.2
112
Tumor
0.2
616
Normal
0.2
858
Normal
0.2
284
Normal
0.2
463
Tumor
0.2
574
Normal
0.2
742
Normal
0.2
286
Normal
0.2
481
Tumor
0.2
262
Normal
0.2
1027
Tumor
0.2
953
Tumor
0.2
218
Normal
0.2
162
Normal
0.2
366
Normal
0.2
212
Normal
0.2
258
Normal
0.2
126
Normal
0.2
852
Normal
0.1
343
Tumor
0.1
312
Normal
0.1
138
Normal
0.1
214
Normal
0.1
422
Normal
0.1
477
Tumor
0.1
648
Normal
0.1
497
Tumor
0.1
482
Normal
0.1
862
Normal
0.1
824
Normal
0.1
976
Normal
0.1
353
Tumor
0.1
391
Tumor
0.1
863
Tumor
0.1
428
Normal
0.1
111
Normal
0.1
714
Normal
0.1
114
Normal
0.1
342
Normal
0.1
918
Normal
0.1
386
Normal
0.1
186
Normal
0.1
365
Tumor
0.1
1028
Normal
0.1
1021
Tumor
0.1
426
Normal
0.1
196
Normal
0.1
661
Tumor
0.1
978
Normal
0.1
558
Normal
0.1
642
Normal
0.1
938
Normal
0.1
944
Normal
0.1
356
Normal
0.1
1032
Normal
0.1
968
Normal
0.1
367
Tumor
0.1
224
Normal
0.1
868
Normal
0.1
464
Normal
0.1
857
Tumor
0.1
448
Normal
0.1
698
Normal
0.1
494
Normal
0.1
755
Tumor
0.1
488
Normal
0.1
424
Normal
0.1
314
Normal
0.1
232
Normal
0.1
912
Normal
0.0
456
Normal
0.0
528
Normal
0.0
368
Normal
0.0
412
Normal
0.0
664
Normal
0.0
141
Tumor
0.0
964
Normal
0.0
188
Normal
0.0
328
Normal
0.0
466
Normal
0.0
278
Normal
0.0
916
Normal
0.0
434
Normal
0.0
535
Tumor
0.0
924
Normal
0.0
865
Tumor
0.0
468
Normal
0.0
914
Normal
0.0
383
Tumor
0.0
546
Normal
0.0
874
Normal
0.0
615
Tumor
0.0
526
Normal
0.0
716
Normal
0.0
516
Normal
0.0
1044
Normal
0.0
662
Normal
0.0
128
Normal
0.0
341
Tumor
0.0
148
Normal
0.0
922
Normal
0.0
568
Normal
0.0
884
Normal
0.0
223
Tumor
0.0
618
Normal
0.0
745
Tumor
0.0
533
Tumor
0.0
484
Normal
0.0
362
Normal
0.0
786
Normal
0.0
1014
Normal
0.0
514
Normal
0.0
311
Tumor
0.0
878
Normal
0.0
492
Normal
-0.1
866
Normal
-0.1
376
Normal
-0.1
958
Normal
-0.1
421
Tumor
-0.1
534
Normal
-0.1
145
Tumor
-0.1
628
Normal
-0.1
195
Tumor
-0.1
478
Normal
-0.1
813
Tumor
-0.1
332
Normal
-0.1
146
Normal
-0.1
744
Normal
-0.1
392
Normal
-0.1
741
Tumor
-0.1
686
Normal
-0.1
487
Tumor
-0.1
124
Normal
-0.1
388
Normal
-0.1
364
Normal
-0.1
427
Tumor
-0.1
666
Normal
-0.1
777
Tumor
-0.1
1046
Normal
-0.1
213
Tumor
-0.1
572
Normal
-0.1
384
Normal
-0.1
696
Normal
-0.1
913
Tumor
-0.1
354
Normal
-0.1
192
Normal
-0.2
217
Tumor
-0.2
277
Tumor
-0.2
352
Normal
-0.2
498
Normal
-0.2
965
Tumor
-0.2
954
Normal
-0.2
446
Normal
-0.2
984
Normal
-0.2
396
Normal
-0.2
923
Tumor
-0.2
554
Normal
-0.2
515
Tumor
-0.2
187
Tumor
-0.2
818
Normal
-0.2
268
Normal
-0.2
536
Normal
-0.2
814
Normal
-0.2
465
Tumor
-0.2
493
Tumor
-0.2
142
Normal
-0.2
724
Normal
-0.2
877
Tumor
-0.2
925
Tumor
-0.2
344
Normal
-0.2
815
Tumor
-0.2
937
Tumor
-0.2
563
Tumor
-0.2
211
Tumor
-0.2
538
Normal
-0.2
123
Tumor
-0.2
527
Tumor
-0.3
351
Tumor
-0.3
171
Tumor
-0.3
455
Tumor
-0.3
261
Tumor
-0.3
785
Tumor
-0.3
127
Tumor
-0.3
1043
Tumor
-0.3
423
Tumor
-0.3
231
Tumor
-0.3
461
Tumor
-0.3
433
Tumor
-0.3
1045
Tumor
-0.3
943
Tumor
-0.3
444
Normal
-0.3
357
Tumor
-0.3
721
Tumor
-0.3
523
Tumor
-0.4
524
Normal
-0.4
137
Tumor
-0.4
951
Tumor
-0.4
636
Normal
-0.4
185
Tumor
-0.4
447
Tumor
-0.4
297
Tumor
-0.4
697
Tumor
-0.4
415
Tumor
-0.4
147
Tumor
-0.4
617
Tumor
-0.4
467
Tumor
-0.4
517
Tumor
-0.4
285
Tumor
-0.4
483
Tumor
-0.4
672
Normal
-0.4
823
Tumor
-0.5
451
Tumor
-0.5
873
Tumor
-0.5
963
Tumor
-0.5
435
Tumor
-0.5
557
Tumor
-0.5
883
Tumor
-0.5
627
Tumor
-0.5
981
Tumor
-0.5
443
Tumor
-0.5
355
Tumor
-0.5
363
Tumor
-0.5
331
Tumor
-0.5
967
Tumor
-0.5
647
Tumor
-0.5
431
Tumor
-0.5
957
Tumor
-0.5
671
Tumor
-0.6
545
Tumor
-0.6
983
Tumor
-0.6
385
Tumor
-0.6
921
Tumor
-0.6
395
Tumor
-0.6
1015
Tumor
-0.6
227
Tumor
-0.6
915
Tumor
-0.7
191
Tumor
-0.7
685
Tumor
-0.7
851
Tumor
-0.7
635
Tumor
-0.8
1025
Tumor
-0.8
881
Tumor
-0.8
445
Tumor
-0.8
867
Tumor
-0.8
977
Tumor
-0.8
221
Tumor
-0.8
271
Tumor
-0.8
1031
Tumor
-0.9
665
Tumor
-0.9
817
Tumor
-0.9
131
Tumor
-0.9
975
Tumor
-1.0
473
Tumor
-1.0
743
Tumor
-1.1
471
Tumor
-1.1
861
Tumor
-1.1
715
Tumor
-1.1
553
Tumor
-1.2
911
Tumor
-1.2
393
Tumor
-1.4
641
Tumor
-1.4
411
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
