Expression of PGD in head and neck cancer

HEAD AND NECK SQUAMOUS CELL CARCINOMA (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

PGD is not prognostic in Head and Neck Squamous Cell Carcinoma (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 85.78

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average TPM

148.3

Number of samples

492

Samples

Sample	Description	TPM
TCGA-CQ-5324-01A	0 years, male, white, stage:Stage III, alive, 1593 days	1174.0
TCGA-CV-6955-01A	0 years, female, white, stage:Stage II, dead, 334 days	1071.6
TCGA-CV-7422-01A	0 years, female, white, stage:Stage IVA, dead, 1037 days	1067.2
TCGA-CN-6010-01A	0 years, male, white, stage:Stage IVA, alive, 1523 days	1041.3
TCGA-QK-A6VB-01A	0 years, male, white, stage:Stage IVA, alive, 641 days	956.0
TCGA-CN-6023-01A	0 years, male, white, stage:Stage IVA, alive, 1584 days	898.5
TCGA-UF-A7JO-01A	0 years, female, white, stage:Stage IVA, dead, 631 days	799.1
TCGA-QK-A8ZA-01A	0 years, male, black or african american, stage:'--, dead, 371 days	761.5
TCGA-CV-6940-01A	0 years, female, white, stage:Stage III, dead, 804 days	752.2
TCGA-CQ-6228-01A	0 years, female, white, stage:Stage IVA, dead, 456 days	720.5
TCGA-P3-A6T0-01A	0 years, female, white, stage:Stage IVA, alive, 578 days	637.8
TCGA-CV-6951-01A	0 years, male, white, stage:Stage IVA, dead, 915 days	622.4
TCGA-IQ-A61H-01A	0 years, male, white, stage:Stage II, alive, 1138 days	622.1
TCGA-UF-A71A-01A	0 years, male, white, stage:Stage IVA, dead, 86 days	601.2
TCGA-CV-5978-01A	0 years, female, black or african american, stage:Stage IVB, dead, 215 days	568.9
TCGA-H7-7774-01A	0 years, female, white, stage:Stage IVA, alive, 407 days	567.6
TCGA-CV-7424-01A	0 years, male, asian, stage:Stage IVA, dead, 453 days	561.5
TCGA-CN-5359-01A	0 years, male, white, stage:Stage IVA, dead, 377 days	557.4
TCGA-MZ-A6I9-01A	0 years, male, white, stage:'--, dead, 489 days	548.0
TCGA-CV-7407-01A	0 years, female, white, stage:Stage II, dead, 1081 days	543.4
TCGA-UF-A7JF-01A	0 years, male, white, stage:Stage IVA, alive, 1686 days	535.4
TCGA-CV-5435-01A	0 years, male, white, stage:Stage IVA, dead, 2319 days	527.4
TCGA-QK-A8Z8-01A	0 years, female, black or african american, stage:Stage IVC, dead, 171 days	521.7
TCGA-CQ-A4CG-01A	0 years, female, white, stage:Stage III, dead, 430 days	518.2
TCGA-CV-6933-01A	0 years, male, white, stage:Stage III, dead, 2741 days	510.6
TCGA-UF-A71E-01A	0 years, male, white, stage:Stage IVA, dead, 1504 days	488.8
TCGA-CV-6935-01A	0 years, male, white, stage:Stage IVA, dead, 295 days	483.2
TCGA-CV-7414-01A	0 years, male, white, stage:Stage IVA, dead, 14 days	475.9
TCGA-CV-7429-01A	0 years, male, white, stage:Stage IVA, dead, 107 days	460.7
TCGA-CV-7177-01A	0 years, female, white, stage:Stage II, dead, 663 days	452.8
TCGA-CQ-A4CI-01A	0 years, male, white, stage:Stage III, alive, 950 days	450.9
TCGA-BA-A6D8-01A	0 years, male, black or african american, stage:Stage IVA, alive, 850 days	441.9
TCGA-CV-7432-01A	0 years, male, white, stage:Stage II, dead, 2570 days	434.2
TCGA-UF-A719-01A	0 years, male, stage:Stage II, alive, 1663 days	411.7
TCGA-CR-6480-01A	0 years, male, white, stage:'--, alive, 362 days	406.1
TCGA-UF-A71B-01A	0 years, male, white, stage:Stage IVA, alive, 1506 days	392.1
TCGA-CR-7383-01A	0 years, female, white, stage:Stage I, dead, 521 days	388.0
TCGA-DQ-5629-01A	0 years, male, white, stage:'--, dead, 941 days	385.5
TCGA-DQ-7588-01A	0 years, male, white, stage:'--, dead, 427 days	381.2
TCGA-P3-A5QF-01A	0 years, male, white, stage:Stage IVA, dead, 330 days	367.2
TCGA-IQ-A6SG-01A	0 years, female, white, stage:Stage III, alive, 579 days	365.3
TCGA-BB-8601-01A	0 years, male, black or african american, stage:Stage III, alive, 624 days	359.1
TCGA-CV-7437-01A	0 years, male, stage:Stage II, dead, 506 days	354.2
TCGA-CV-7416-01A	0 years, female, white, stage:Stage IVA, dead, 763 days	352.8
TCGA-CV-6962-01A	0 years, male, white, stage:Stage IVA, dead, 126 days	352.3
TCGA-CV-7418-01A	0 years, male, black or african american, stage:Stage IVA, dead, 789 days	347.4
TCGA-BA-A4IG-01A	0 years, male, white, stage:'--, alive, 855 days	340.1
TCGA-P3-A5Q5-01A	0 years, male, white, stage:Stage IVA, alive, 910 days	325.0
TCGA-CN-6012-01A	0 years, male, white, stage:Stage IVA, alive, 1460 days	322.2
TCGA-CV-5440-01A	0 years, male, white, stage:Stage IVA, alive, 3270 days	319.0
TCGA-BA-5152-01A	0 years, male, white, stage:Stage IVA, alive, 1288 days	314.8
TCGA-CV-7101-01A	0 years, male, white, stage:Stage II, dead, 160 days	313.6
TCGA-CV-5434-01A	0 years, male, black or african american, stage:Stage IVA, dead, 3314 days	308.6
TCGA-CR-6482-01A	0 years, male, black or african american, stage:'--, alive, 345 days	305.9
TCGA-CR-7385-01A	0 years, male, white, stage:'--, alive, 997 days	301.8
TCGA-CV-7099-01A	0 years, female, white, stage:Stage II, dead, 243 days	292.6
TCGA-D6-A6EO-01A	0 years, male, white, stage:Stage IVA, alive, 759 days	284.2
TCGA-CN-6019-01A	0 years, male, white, stage:Stage IVA, alive, 1038 days	276.5
TCGA-QK-A6VC-01A	0 years, female, black or african american, stage:Stage IVA, alive, 600 days	274.9
TCGA-CQ-5332-01A	0 years, male, white, stage:Stage III, dead, 317 days	274.2
TCGA-CR-5249-01A	0 years, female, white, stage:Stage II, alive, 1152 days	272.2
TCGA-BB-A6UM-01A	0 years, male, white, stage:Stage III, alive, 393 days	261.8
TCGA-F7-7848-01A	0 years, male, white, stage:Stage IVA, alive, 1131 days	261.8
TCGA-CR-7368-01A	0 years, male, white, stage:Stage IVA, alive, 1245 days	260.9
TCGA-CN-6988-01A	0 years, male, white, stage:Stage IVA, alive, 318 days	246.4
TCGA-BA-5555-01A	0 years, male, black or african american, stage:Stage IVA, alive, 520 days	241.5
TCGA-CR-6477-01A	0 years, female, white, stage:'--, alive, 514 days	241.0
TCGA-CV-7103-01A	0 years, male, white, stage:Stage IVA, dead, 1591 days	239.6
TCGA-CN-6024-01A	0 years, male, white, stage:Stage IVA, dead, 337 days	239.5
TCGA-CV-7254-01A	0 years, male, white, stage:Stage II, dead, 1459 days	238.2
TCGA-BA-A8YP-01A	0 years, male, black or african american, stage:Stage IVB, alive, 499 days	237.6
TCGA-HD-7754-01A	0 years, male, white, stage:Stage IVA, alive, 783 days	236.7
TCGA-CQ-A4C9-01A	0 years, male, stage:Stage III, alive, 707 days	235.7
TCGA-CR-7390-01A	0 years, male, white, stage:Stage IVA, alive, 1508 days	235.2
TCGA-CV-7253-01A	0 years, male, black or african american, stage:Stage IVA, dead, 361 days	232.3
TCGA-CV-7427-01A	0 years, female, white, stage:Stage II, dead, 4760 days	227.4
TCGA-CR-7364-01A	0 years, male, white, stage:Stage III, alive, 1435 days	225.7
TCGA-CV-7261-01A	0 years, male, white, stage:Stage IVA, alive, 1512 days	225.5
TCGA-T3-A92N-01A	0 years, male, black or african american, stage:Stage IVA, dead, 95 days	223.2
TCGA-CV-5432-01A	0 years, male, white, stage:Stage III, alive, 3930 days	222.5
TCGA-CV-5430-01A	0 years, male, white, stage:Stage IVA, alive, 4241 days	219.6
TCGA-CN-4741-01A	0 years, male, white, stage:Stage IVA, alive, 2239 days	218.2
TCGA-CN-5364-01A	0 years, male, white, stage:Stage IVA, dead, 493 days	214.3
TCGA-CR-7399-01A	0 years, female, white, stage:Stage IVA, alive, 181 days	209.2
TCGA-QK-A6V9-01A	0 years, male, white, stage:Stage II, alive, 833 days	206.1
TCGA-CV-7446-01A	0 years, male, white, stage:Stage IVA, dead, 1093 days	205.9
TCGA-CR-7404-01A	0 years, male, white, stage:'--, alive, 1472 days	204.1
TCGA-MZ-A7D7-01A	0 years, male, white, stage:Stage IVA, alive, 547 days	203.8
TCGA-CN-4727-01A	0 years, male, white, stage:Stage IVA, alive, 1560 days	202.1
TCGA-CV-7250-01A	0 years, male, white, stage:Stage IVA, dead, 2900 days	201.4
TCGA-CR-7393-01A	0 years, male, white, stage:Stage III, alive, 993 days	196.8
TCGA-CN-A6V6-01A	0 years, male, white, stage:Stage IVA, alive, 635 days	196.4
TCGA-HD-8224-01A	0 years, male, white, stage:Stage IVA, dead, 446 days	196.2
TCGA-CV-A460-01A	0 years, male, white, stage:'--, dead, 1838 days	196.2
TCGA-CV-A468-01A	0 years, male, stage:Stage IVA, dead, 464 days	194.0
TCGA-CR-7388-01A	0 years, female, white, stage:'--, dead, 823 days	193.9
TCGA-KU-A6H8-01A	0 years, male, white, stage:Stage IVA, dead, 327 days	193.5
TCGA-KU-A6H7-01A	0 years, female, white, stage:Stage IVA, alive, 586 days	192.9
TCGA-P3-A5QE-01A	0 years, male, white, stage:Stage III, alive, 1559 days	192.5
TCGA-BA-6872-01A	0 years, male, white, stage:'--, dead, 384 days	191.8
TCGA-CN-6997-01A	0 years, male, white, stage:Stage IVA, dead, 988 days	191.3
TCGA-CR-6487-01A	0 years, male, white, stage:Stage I, alive, 234 days	190.9
TCGA-P3-A6SW-01A	0 years, male, white, stage:Stage IVB, alive, 1120 days	189.9
TCGA-CV-7248-01A	0 years, female, black or african american, stage:Stage IVA, dead, 521 days	187.5
TCGA-CV-7428-01A	0 years, male, white, stage:Stage IVA, dead, 1671 days	187.1
TCGA-CQ-5326-01A	0 years, male, white, stage:Stage IVA, dead, 89 days	185.3
TCGA-CV-7263-01A	0 years, male, black or african american, stage:Stage II, dead, 560 days	185.3
TCGA-CR-6472-01A	0 years, male, white, stage:'--, alive, 1050 days	183.9
TCGA-CR-7391-01A	0 years, female, white, stage:Stage I, alive, 913 days	182.9
TCGA-CN-A49C-01A	0 years, male, white, stage:'--, alive, 645 days	178.9
TCGA-CV-7089-01A	0 years, male, white, stage:Stage IVA, dead, 1972 days	177.1
TCGA-CV-7406-01A	0 years, male, white, stage:Stage II, dead, 1748 days	177.0
TCGA-CN-A6V7-01A	0 years, male, white, stage:Stage IVA, alive, 594 days	176.0
TCGA-CV-7242-01A	0 years, female, white, stage:Stage II, alive, 1095 days	174.4
TCGA-CN-6020-01A	0 years, male, black or african american, stage:Stage III, dead, 205 days	173.1
TCGA-BA-A4IF-01A	0 years, male, white, stage:'--, alive, 895 days	173.0
TCGA-CR-6481-01A	0 years, male, white, stage:'--, alive, 311 days	172.7
TCGA-CR-7369-01A	0 years, male, white, stage:Stage IVA, dead, 1090 days	170.9
TCGA-CN-6989-01A	0 years, male, white, stage:Stage IVA, dead, 980 days	164.3
TCGA-QK-AA3J-01A	0 years, male, black or african american, stage:Stage I, alive, 466 days	164.0
TCGA-CN-4739-01A	0 years, male, white, stage:Stage IVA, dead, 1394 days	160.6
TCGA-UP-A6WW-01A	0 years, male, white, stage:'--, alive, 518 days	159.7
TCGA-CV-A45V-01A	0 years, female, white, stage:Stage IVA, dead, 32 days	159.7
TCGA-CV-A45W-01A	0 years, male, white, stage:Stage II, dead, 1398 days	159.1
TCGA-TN-A7HJ-01A	0 years, male, white, stage:Stage IVA, alive, 403 days	158.4
TCGA-CQ-6223-01A	0 years, male, white, stage:Stage II, alive, 1428 days	157.2
TCGA-CV-A45Z-01A	0 years, male, white, stage:'--, dead, 1466 days	157.2
TCGA-UF-A7J9-01A	0 years, male, white, stage:Stage IVA, alive, 1358 days	155.6
TCGA-CN-A497-01A	0 years, male, stage:Stage III, alive, 1065 days	155.5
TCGA-CV-6937-01A	0 years, male, white, stage:Stage II, dead, 624 days	155.4
TCGA-CN-5360-01A	0 years, male, white, stage:Stage IVA, alive, 2169 days	155.2
TCGA-D6-6824-01A	0 years, male, white, stage:Stage IVA, alive, 77 days	153.9
TCGA-BA-A6DE-01A	0 years, female, white, stage:Stage II, alive, 440 days	152.9
TCGA-MT-A67A-01A	0 years, female, white, stage:Stage I, alive, 914 days	151.9
TCGA-CR-5243-01A	0 years, male, white, stage:'--, alive, 2562 days	148.6
TCGA-P3-A6T4-01A	0 years, male, white, stage:Stage IVA, dead, 62 days	147.5
TCGA-BA-A6DI-01A	0 years, male, black or african american, stage:'--, dead, 336 days	145.8
TCGA-BA-A4IH-01A	0 years, male, white, stage:'--, alive, 622 days	145.7
TCGA-P3-A6T6-01A	0 years, male, white, stage:Stage IVA, dead, 395 days	144.6
TCGA-CR-6492-01A	0 years, male, white, stage:Stage III, alive, 479 days	144.4
TCGA-HD-8635-01A	0 years, female, white, stage:Stage III, alive, 695 days	140.5
TCGA-CV-6441-01A	0 years, male, white, stage:Stage III, dead, 292 days	140.5
TCGA-BA-5153-01A	0 years, male, white, stage:'--, dead, 1762 days	140.4
TCGA-CV-6948-01A	0 years, female, white, stage:Stage IVB, dead, 1289 days	138.6
TCGA-CR-6467-01A	0 years, male, white, stage:Stage III, alive, 1777 days	138.4
TCGA-CR-7402-01A	0 years, male, white, stage:'--, alive, 911 days	137.7
TCGA-IQ-A61I-01A	0 years, male, black or african american, stage:Stage IVA, dead, 2 days	135.8
TCGA-BA-6869-01A	0 years, male, white, stage:Stage III, alive, 644 days	135.3
TCGA-CN-4740-01A	0 years, female, white, stage:Stage IVA, dead, 839 days	134.8
TCGA-CR-7397-01A	0 years, male, white, stage:Stage IVA, alive, 754 days	134.6
TCGA-CQ-6225-01A	0 years, male, white, stage:Stage III, dead, 403 days	134.5
TCGA-CV-A6JY-01A	0 years, male, white, stage:Stage IVA, alive, 646 days	133.8
TCGA-CX-7082-01A	0 years, male, white, stage:Stage IVA, dead, 11 days	133.2
TCGA-F7-A61V-01A	0 years, male, white, stage:Stage II, alive, 759 days	132.5
TCGA-CX-7086-01A	0 years, male, black or african american, stage:Stage III, alive, 573 days	131.8
TCGA-CV-7236-01A	0 years, female, white, stage:Stage IVA, dead, 144 days	131.4
TCGA-BB-8596-01A	0 years, female, white, stage:Stage IVA, alive, 2161 days	130.8
TCGA-CV-6941-01A	0 years, male, white, stage:Stage III, dead, 342 days	128.7
TCGA-CN-4729-01A	0 years, male, white, stage:Stage III, alive, 392 days	128.0
TCGA-CV-7091-01A	0 years, male, white, stage:Stage I, alive, 3381 days	127.3
TCGA-KU-A66S-01A	0 years, female, white, stage:Stage III, dead, 406 days	127.0
TCGA-CN-A641-01A	0 years, male, white, stage:Stage IVA, alive, 367 days	126.5
TCGA-CN-5374-01A	0 years, female, white, stage:Stage IVA, dead, 1732 days	124.6
TCGA-D6-A4ZB-01A	0 years, male, white, stage:Stage III, alive, 376 days	124.2
TCGA-BA-5556-01A	0 years, female, white, stage:Stage II, alive, 725 days	123.1
TCGA-CR-6471-01A	0 years, male, white, stage:Stage IVA, dead, 1202 days	123.0
TCGA-CR-7377-01A	0 years, male, white, stage:Stage IVA, dead, 279 days	122.4
TCGA-BB-4223-01A	0 years, male, white, stage:Stage IVA, alive, 3221 days	121.1
TCGA-CV-7433-01A	0 years, male, white, stage:Stage IVA, dead, 601 days	121.1
TCGA-CV-5441-01A	0 years, male, white, stage:Stage IVA, alive, 2886 days	121.0
TCGA-D6-6827-01A	0 years, female, white, stage:Stage I, alive, 568 days	120.6
TCGA-WA-A7GZ-01A	0 years, male, white, stage:'--, dead, 625 days	120.5
TCGA-BB-4225-01A	0 years, male, white, stage:'--, alive, 146 days	120.5
TCGA-F7-A623-01A	0 years, male, white, stage:Stage IVA, alive, 616 days	120.5
TCGA-CN-4728-01A	0 years, male, white, stage:Stage IVA, alive, 1724 days	120.4
TCGA-CR-7389-01A	0 years, male, black or african american, stage:'--, alive, 392 days	120.3
TCGA-CV-6960-01A	0 years, male, black or african american, stage:Stage III, dead, 862 days	120.0
TCGA-IQ-A61G-01A	0 years, male, white, stage:Stage IVA, alive, 360 days	119.4
TCGA-CQ-6222-01A	0 years, male, white, stage:Stage IVA, alive, 2016 days	117.5
TCGA-CN-5366-01A	0 years, male, white, stage:Stage IVA, dead, 360 days	117.4
TCGA-CV-A6JU-01A	0 years, female, white, stage:Stage IVB, alive, 110 days	117.3
TCGA-HD-8634-01A	0 years, female, white, stage:Stage I, dead, 385 days	117.1
TCGA-CN-4742-01A	0 years, female, white, stage:Stage IVA, dead, 397 days	117.0
TCGA-IQ-7632-01A	0 years, female, white, stage:Stage IVA, alive, 441 days	116.8
TCGA-CN-A498-01A	0 years, female, white, stage:Stage III, dead, 773 days	115.9
TCGA-CN-5370-01A	0 years, male, white, stage:Stage III, dead, 259 days	115.8
TCGA-CV-A45R-01A	0 years, male, white, stage:Stage III, alive, 5480 days	115.2
TCGA-CV-6433-01A	0 years, male, white, stage:Stage II, alive, 641 days	115.0
TCGA-CR-6491-01A	0 years, male, black or african american, stage:Stage IVA, alive, 693 days	114.5
TCGA-BA-A6DD-01A	0 years, male, black or african american, stage:Stage IVA, dead, 173 days	114.1
TCGA-CV-6939-01A	0 years, male, white, stage:Stage IVA, dead, 666 days	113.1
TCGA-D6-A4Z9-01A	0 years, male, white, stage:Stage IVA, alive, 539 days	113.0
TCGA-CV-7100-01A	0 years, male, white, stage:Stage III, dead, 274 days	112.6
TCGA-MT-A51W-01A	0 years, female, white, stage:Stage I, alive, 437 days	112.3
TCGA-HD-A4C1-01A	0 years, female, black or african american, stage:Stage IVA, alive, 11 days	111.4
TCGA-CQ-5334-01A	0 years, male, white, stage:Stage IVA, dead, 129 days	111.1
TCGA-CN-A63U-01A	0 years, male, white, stage:Stage IVA, alive, 964 days	111.0
TCGA-TN-A7HL-01A	0 years, male, white, stage:Stage IVA, alive, 619 days	110.8
TCGA-CN-6022-01A	0 years, male, white, stage:Stage IVA, dead, 281 days	110.3
TCGA-F7-8298-01A	0 years, male, white, stage:Stage I, alive, 995 days	110.2
TCGA-CR-7371-01A	0 years, female, white, stage:Stage III, dead, 94 days	109.8
TCGA-CR-7398-01A	0 years, female, white, stage:Stage II, alive, 156 days	109.6
TCGA-CV-5443-01A	0 years, male, black or african american, stage:Stage III, alive, 2784 days	109.5
TCGA-HL-7533-01A	0 years, male, white, stage:'--, alive, 1057 days	109.4
TCGA-D6-8568-01A	0 years, male, white, stage:Stage II, alive, 759 days	109.4
TCGA-BA-5559-01A	0 years, male, white, stage:'--, dead, 2083 days	108.8
TCGA-QK-AA3K-01A	0 years, male, black or african american, stage:Stage IVA, alive, 253 days	108.8
TCGA-CR-5247-01A	0 years, male, black or african american, stage:'--, alive, 358 days	108.3
TCGA-CN-6992-01A	0 years, male, white, stage:Stage IVA, alive, 1066 days	107.7
TCGA-CN-A63T-01A	0 years, male, white, stage:Stage IVA, alive, 225 days	107.5
TCGA-BA-6873-01A	0 years, male, white, stage:Stage IVA, alive, 122 days	106.5
TCGA-CV-7421-01A	0 years, male, white, stage:Stage IVA, dead, 2 days	105.9
TCGA-H7-A76A-01A	0 years, male, white, stage:'--, alive, 637 days	105.2
TCGA-CV-7180-01A	0 years, male, white, stage:Stage II, dead, 327 days	105.1
TCGA-CV-7435-01A	0 years, female, white, stage:Stage IVA, dead, 4680 days	104.1
TCGA-BA-A6DB-01A	0 years, female, white, stage:Stage I, alive, 216 days	103.9
TCGA-MT-A51X-01A	0 years, male, white, stage:Stage IVA, alive, 242 days	103.8
TCGA-QK-A6IF-01A	0 years, male, white, stage:'--, alive, 704 days	103.6
TCGA-P3-A5Q6-01A	0 years, male, white, stage:Stage IVA, dead, 480 days	103.4
TCGA-CR-6478-01A	0 years, female, white, stage:'--, dead, 183 days	103.2
TCGA-CN-4723-01A	0 years, male, white, stage:Stage IVA, alive, 1699 days	102.5
TCGA-P3-A6T5-01A	0 years, female, white, stage:Stage IVA, dead, 882 days	102.3
TCGA-CN-4735-01A	0 years, male, white, stage:Stage IVA, alive, 1737 days	102.1
TCGA-D6-6515-01A	0 years, female, white, stage:Stage II, dead, 403 days	101.9
TCGA-CV-6945-01A	0 years, male, white, stage:Stage IVA, dead, 366 days	101.2
TCGA-D6-6825-01A	0 years, male, white, stage:Stage I, alive, 491 days	101.2
TCGA-CV-A461-01A	0 years, male, white, stage:'--, dead, 2064 days	101.1
TCGA-MZ-A5BI-01A	0 years, male, white, stage:'--, dead, 217 days	100.9
TCGA-CR-7401-01A	0 years, male, white, stage:Stage I, alive, 1077 days	100.6
TCGA-CR-6473-01A	0 years, male, white, stage:'--, alive, 1125 days	100.6
TCGA-CR-6493-01A	0 years, male, black or african american, stage:Stage IVA, dead, 282 days	100.6
TCGA-MT-A67F-01A	0 years, female, white, stage:Stage IVA, alive, 384 days	99.6
TCGA-CN-4722-01A	0 years, female, white, stage:Stage II, alive, 1483 days	99.3
TCGA-CN-6011-01A	0 years, male, white, stage:Stage IVA, alive, 933 days	99.0
TCGA-CV-6953-01A	0 years, female, white, stage:Stage III, dead, 1641 days	98.3
TCGA-CR-5250-01A	0 years, male, white, stage:'--, alive, 799 days	98.3
TCGA-F7-A50I-01A	0 years, male, white, stage:Stage IVA, alive, 92 days	98.1
TCGA-CV-6961-01A	0 years, male, white, stage:Stage II, dead, 76 days	97.8
TCGA-CV-7097-01A	0 years, male, white, stage:Stage II, dead, 385 days	97.1
TCGA-CQ-5331-01A	0 years, female, white, stage:'--, alive, 1399 days	96.3
TCGA-BA-A6DL-01A	0 years, male, white, stage:'--, alive, 623 days	96.2
TCGA-UF-A718-01A	0 years, male, white, stage:Stage IVA, alive, 1971 days	96.2
TCGA-HD-7832-01A	0 years, male, white, stage:Stage IVA, alive, 836 days	96.0
TCGA-RS-A6TP-01A	0 years, male, white, stage:Stage II, alive, 516 days	95.8
TCGA-KU-A66T-01A	0 years, female, white, stage:Stage IVA, alive, 552 days	94.9
TCGA-CV-7430-01A	0 years, male, white, stage:Stage IVA, dead, 495 days	94.6
TCGA-CN-A6V3-01A	0 years, male, white, stage:Stage IVA, alive, 742 days	94.4
TCGA-HD-7753-01A	0 years, male, black or african american, stage:Stage I, alive, 866 days	94.0
TCGA-F7-8489-01A	0 years, male, white, stage:Stage II, alive, 658 days	93.9
TCGA-CV-7245-01A	0 years, male, white, stage:Stage IVA, alive, 797 days	93.8
TCGA-T2-A6X0-01A	0 years, male, white, stage:'--, alive, 216 days	93.5
TCGA-BA-6870-01A	0 years, female, black or african american, stage:'--, dead, 451 days	93.5
TCGA-UF-A7JC-01A	0 years, male, white, stage:Stage IVA, dead, 546 days	93.0
TCGA-CV-5966-01A	0 years, female, white, stage:Stage IVA, dead, 545 days	92.9
TCGA-D6-6823-01A	0 years, male, white, stage:Stage II, alive, 701 days	92.9
TCGA-CR-7395-01A	0 years, female, white, stage:Stage II, alive, 930 days	92.7
TCGA-CV-7415-01A	0 years, male, white, stage:Stage IVA, dead, 695 days	92.5
TCGA-CV-A45U-01A	0 years, male, white, stage:Stage IVA, dead, 1079 days	92.3
TCGA-CN-5369-01A	0 years, female, white, stage:Stage IVA, dead, 1 days	92.1
TCGA-CR-7370-01A	0 years, female, white, stage:'--, alive, 105 days	91.7
TCGA-UF-A7JV-01A	0 years, female, white, stage:Stage IVA, dead, 90 days	90.5
TCGA-CV-A6K2-01A	0 years, male, white, stage:Stage IVA, dead, 317 days	90.5
TCGA-CR-7376-01A	0 years, male, white, stage:Stage III, alive, 972 days	89.4
TCGA-QK-A6IG-01A	0 years, male, white, stage:Stage III, dead, 222 days	89.3
TCGA-BA-A4II-01A	0 years, male, white, stage:Stage II, alive, 918 days	89.0
TCGA-D6-8569-01A	0 years, male, white, stage:Stage II, alive, 770 days	88.1
TCGA-CV-6003-01A	0 years, female, white, stage:Stage III, alive, 1665 days	88.1
TCGA-CV-6938-01A	0 years, male, white, stage:Stage II, dead, 144 days	87.9
TCGA-CQ-6219-01A	0 years, female, white, stage:Stage IVA, dead, 479 days	87.4
TCGA-CN-A6UY-01A	0 years, male, white, stage:Stage IVA, alive, 713 days	87.2
TCGA-CV-7102-01A	0 years, female, white, stage:Stage IVA, dead, 56 days	86.0
TCGA-CV-5439-01A	0 years, male, white, stage:Stage IVA, dead, 546 days	85.8
TCGA-IQ-A6SH-01A	0 years, male, black or african american, stage:Stage III, alive, 471 days	85.7
TCGA-CV-7423-01A	0 years, male, white, stage:Stage II, dead, 3059 days	85.5
TCGA-CQ-7063-01A	0 years, female, white, stage:Stage I, alive, 2133 days	85.3
TCGA-HD-8314-01A	0 years, male, white, stage:Stage III, alive, 670 days	84.9
TCGA-CV-5976-01A	0 years, male, white, stage:Stage IVA, alive, 1478 days	84.6
TCGA-CQ-6229-01A	0 years, male, white, stage:Stage II, alive, 1179 days	84.2
TCGA-CQ-6221-01A	0 years, male, white, stage:'--, alive, 1000 days	83.9
TCGA-UF-A7JA-01A	0 years, female, white, stage:Stage IVA, alive, 2265 days	83.6
TCGA-CV-7235-01A	0 years, male, white, stage:Stage II, alive, 2347 days	83.5
TCGA-CR-5248-01A	0 years, male, white, stage:'--, alive, 1663 days	83.3
TCGA-MT-A67D-01A	0 years, male, white, stage:Stage II, alive, 56 days	83.1
TCGA-CX-7219-01A	0 years, male, black or african american, stage:Stage IVA, alive, 1045 days	82.8
TCGA-T3-A92M-01A	0 years, male, black or african american, stage:Stage IVA, alive, 417 days	82.6
TCGA-CQ-A4CD-01A	0 years, male, white, stage:Stage IVA, alive, 1022 days	82.4
TCGA-D6-A74Q-01A	0 years, male, white, stage:Stage IVA, alive, 710 days	81.5
TCGA-CQ-7068-01A	0 years, female, white, stage:Stage II, alive, 1309 days	81.3
TCGA-CQ-5330-01A	0 years, female, white, stage:Stage IVA, alive, 1897 days	81.1
TCGA-CN-6021-01A	0 years, female, white, stage:'--, dead, 276 days	80.5
TCGA-CN-6995-01A	0 years, male, white, stage:Stage IVA, dead, 112 days	80.4
TCGA-CN-A49B-01A	0 years, male, white, stage:Stage III, alive, 904 days	80.2
TCGA-CN-4738-01A	0 years, male, white, stage:Stage IVA, dead, 436 days	80.1
TCGA-CR-7382-01A	0 years, male, white, stage:Stage IVA, alive, 796 days	79.3
TCGA-CR-6470-01A	0 years, male, white, stage:Stage II, alive, 1521 days	79.3
TCGA-BB-4227-01A	0 years, male, white, stage:Stage IVA, alive, 134 days	79.2
TCGA-BB-A5HZ-01A	0 years, male, white, stage:Stage IVA, alive, 827 days	79.2
TCGA-CV-7104-01A	0 years, female, white, stage:Stage IVA, dead, 393 days	77.3
TCGA-UF-A7JJ-01A	0 years, male, stage:Stage IVA, alive, 549 days	77.2
TCGA-CV-6943-01A	0 years, male, white, stage:Stage III, dead, 602 days	76.6
TCGA-D6-6826-01A	0 years, female, white, stage:Stage IVA, dead, 348 days	75.8
TCGA-BB-4217-01A	0 years, male, black or african american, stage:Stage IVA, alive, 187 days	75.6
TCGA-CV-7183-01A	0 years, male, white, stage:Stage II, alive, 3981 days	75.4
TCGA-CN-6013-01A	0 years, male, white, stage:Stage IVA, dead, 727 days	75.2
TCGA-CQ-5327-01A	0 years, female, asian, stage:Stage IVA, alive, 1660 days	75.1
TCGA-CV-7095-01A	0 years, female, stage:Stage II, dead, 572 days	75.0
TCGA-CN-A499-01A	0 years, female, white, stage:Stage II, alive, 717 days	74.7
TCGA-P3-A6T7-01A	0 years, male, white, stage:Stage IVA, dead, 487 days	74.7
TCGA-CV-7090-01A	0 years, male, white, stage:Stage II, alive, 5252 days	74.4
TCGA-QK-A8Z7-01A	0 years, male, black or african american, stage:Stage IVA, alive, 392 days	74.3
TCGA-CQ-5323-01A	0 years, male, white, stage:Stage I, alive, 1466 days	74.2
TCGA-CN-6994-01A	0 years, male, white, stage:Stage IVA, alive, 1183 days	73.9
TCGA-CV-A6JZ-01A	0 years, male, white, stage:Stage II, alive, 714 days	73.6
TCGA-HD-A634-01A	0 years, male, white, stage:Stage IVA, dead, 130 days	73.4
TCGA-F7-A624-01A	0 years, male, white, stage:Stage II, alive, 378 days	73.2
TCGA-CQ-5333-01A	0 years, male, white, stage:Stage II, dead, 341 days	72.6
TCGA-CQ-6220-01A	0 years, male, white, stage:Stage III, dead, 985 days	72.2
TCGA-CV-A464-01A	0 years, male, white, stage:Stage III, alive, 1722 days	71.8
TCGA-CN-4726-01A	0 years, male, white, stage:Stage IVA, dead, 142 days	71.8
TCGA-CV-7438-01A	0 years, female, white, stage:Stage I, dead, 194 days	71.3
TCGA-MT-A7BN-01A	0 years, male, white, stage:Stage IVA, alive, 469 days	70.9
TCGA-BA-6871-01A	0 years, male, white, stage:'--, dead, 108 days	70.6
TCGA-CV-6954-01A	0 years, male, black or african american, stage:Stage IVA, dead, 2002 days	70.2
TCGA-CN-4730-01A	0 years, male, white, stage:Stage IVA, alive, 817 days	69.6
TCGA-CX-A4AQ-01A	0 years, male, white, stage:Stage IVA, alive, 1555 days	69.5
TCGA-HD-7831-01A	0 years, male, white, stage:Stage IVA, alive, 667 days	69.0
TCGA-BA-5151-01A	0 years, male, white, stage:Stage IVA, alive, 722 days	68.9
TCGA-CV-5970-01A	0 years, male, white, stage:Stage IVA, dead, 406 days	68.3
TCGA-CR-7386-01A	0 years, male, white, stage:Stage IVA, alive, 1430 days	68.3
TCGA-CR-7367-01A	0 years, male, white, stage:Stage IVA, alive, 1440 days	67.7
TCGA-CV-7411-01A	0 years, female, white, stage:Stage IVA, dead, 2717 days	67.7
TCGA-F7-A50G-01A	0 years, male, white, stage:Stage III, alive, 616 days	67.4
TCGA-CQ-5329-01A	0 years, female, white, stage:Stage II, alive, 2143 days	67.2
TCGA-IQ-A61E-01A	0 years, female, white, stage:Stage III, alive, 1147 days	67.2
TCGA-CQ-A4CH-01A	0 years, male, asian, stage:Stage II, dead, 379 days	67.1
TCGA-D6-6516-01A	0 years, male, white, stage:Stage I, alive, 773 days	66.6
TCGA-CQ-6224-01A	0 years, male, white, stage:Stage IVA, alive, 1721 days	66.2
TCGA-UF-A7JD-01A	0 years, male, stage:Stage IVA, dead, 739 days	66.1
TCGA-DQ-5631-01A	0 years, male, white, stage:'--, dead, 548 days	65.5
TCGA-CV-7255-01A	0 years, female, white, stage:Stage IVA, dead, 64 days	64.9
TCGA-QK-A6IJ-01A	0 years, male, white, stage:Stage III, alive, 387 days	64.8
TCGA-UF-A71D-01A	0 years, female, white, stage:Stage IVA, alive, 1461 days	64.6
TCGA-CN-A63W-01A	0 years, female, white, stage:Stage IVA, dead, 377 days	64.4
TCGA-CV-6950-01A	0 years, male, white, stage:Stage IVA, dead, 459 days	64.3
TCGA-CQ-A4C6-01A	0 years, male, asian, stage:Stage II, alive, 1353 days	63.9
TCGA-CR-7392-01A	0 years, female, white, stage:Stage IVA, alive, 1425 days	63.6
TCGA-BB-A5HU-01A	0 years, male, white, stage:Stage IVA, alive, 782 days	63.6
TCGA-CN-4736-01A	0 years, female, white, stage:'--, dead, 395 days	63.5
TCGA-CR-7394-01A	0 years, male, white, stage:Stage IVA, alive, 1346 days	63.5
TCGA-T2-A6WX-01A	0 years, female, white, stage:'--, dead, 209 days	63.4
TCGA-CQ-A4C7-01A	0 years, male, white, stage:Stage III, dead, 353 days	63.3
TCGA-BA-5558-01A	0 years, male, white, stage:'--, alive, 1995 days	62.8
TCGA-F7-A61W-01A	0 years, male, asian, stage:Stage IVA, alive, 14 days	62.7
TCGA-CV-A45X-01A	0 years, male, white, stage:Stage IVA, dead, 198 days	62.7
TCGA-CV-6934-01A	0 years, female, white, stage:Stage IVA, dead, 65 days	62.4
TCGA-D6-A6ES-01A	0 years, male, white, stage:Stage IVA, alive, 389 days	62.1
TCGA-CV-5971-01A	0 years, male, white, stage:Stage IVA, alive, 701 days	61.9
TCGA-CV-5436-01A	0 years, male, stage:Stage IVA, dead, 584 days	61.7
TCGA-CQ-5325-01A	0 years, male, white, stage:Stage I, dead, 654 days	61.7
TCGA-HD-A6HZ-01A	0 years, female, white, stage:Stage III, alive, 111 days	61.6
TCGA-CV-7413-01A	0 years, female, white, stage:Stage II, dead, 294 days	61.1
TCGA-CV-5979-01A	0 years, male, white, stage:Stage IVA, alive, 1315 days	60.9
TCGA-CN-5373-01A	0 years, female, white, stage:Stage I, alive, 1584 days	60.7
TCGA-CR-7372-01A	0 years, male, white, stage:Stage I, alive, 759 days	60.6
TCGA-IQ-A61J-01A	0 years, male, white, stage:Stage IVA, alive, 1021 days	60.5
TCGA-CV-6959-01A	0 years, male, white, stage:Stage III, dead, 256 days	60.5
TCGA-CN-5361-01A	0 years, male, white, stage:Stage IVA, dead, 2120 days	60.4
TCGA-CX-7085-01A	0 years, female, white, stage:Stage I, alive, 321 days	60.0
TCGA-CV-5442-01A	0 years, female, white, stage:Stage IVA, alive, 2327 days	59.9
TCGA-CV-7410-01A	0 years, male, white, stage:Stage III, dead, 6417 days	59.7
TCGA-CN-4725-01A	0 years, male, white, stage:Stage II, alive, 1157 days	59.6
TCGA-P3-A6T2-01A	0 years, male, white, stage:Stage IVA, alive, 2298 days	59.5
TCGA-T2-A6WZ-01A	0 years, male, white, stage:'--, dead, 484 days	59.5
TCGA-BA-4076-01A	0 years, male, white, stage:'--, dead, 415 days	59.3
TCGA-CV-A45T-01A	0 years, female, white, stage:'--, dead, 4856 days	58.8
TCGA-QK-A8ZB-01A	0 years, male, black or african american, stage:Stage IVA, alive, 542 days	58.7
TCGA-CR-7379-01A	0 years, female, white, stage:Stage IVA, alive, 1036 days	58.3
TCGA-CN-5363-01A	0 years, male, black or african american, stage:Stage IVB, dead, 253 days	57.6
TCGA-CR-7380-01A	0 years, male, white, stage:Stage IVB, dead, 606 days	57.5
TCGA-CV-A463-01A	0 years, female, white, stage:Stage IVA, dead, 23 days	57.1
TCGA-CV-7440-01A	0 years, male, white, stage:Stage II, dead, 675 days	57.0
TCGA-CV-A6JN-01A	0 years, male, white, stage:'--, alive, 906 days	57.0
TCGA-BA-5557-01A	0 years, female, stage:Stage III, alive, 623 days	56.9
TCGA-UF-A7JT-01A	0 years, female, white, stage:Stage IVA, dead, 993 days	56.9
TCGA-BB-A6UO-01A	0 years, female, white, stage:Stage IVA, dead, 268 days	56.7
TCGA-CV-A465-01A	0 years, male, white, stage:Stage III, dead, 215 days	56.5
TCGA-H7-8502-01A	0 years, male, white, stage:Stage IVA, alive, 458 days	56.2
TCGA-CN-6996-01A	0 years, female, white, stage:Stage IVA, dead, 530 days	56.1
TCGA-CV-7247-01A	0 years, male, white, stage:Stage III, dead, 577 days	56.1
TCGA-CN-5367-01A	0 years, female, white, stage:Stage IVA, dead, 352 days	55.0
TCGA-CR-6474-01A	0 years, male, white, stage:Stage IVA, dead, 564 days	54.8
TCGA-P3-A6T8-01A	0 years, male, white, stage:Stage IVA, alive, 400 days	54.8
TCGA-CN-6016-01A	0 years, male, white, stage:Stage IVA, alive, 1443 days	54.5
TCGA-CR-6484-01A	0 years, female, asian, stage:Stage IVA, alive, 354 days	54.3
TCGA-CV-A45Y-01A	0 years, male, american indian or alaska native, stage:Stage IVA, dead, 2703 days	54.0
TCGA-H7-8501-01A	0 years, male, white, stage:Stage IVA, alive, 461 days	53.9
TCGA-CN-4734-01A	0 years, male, white, stage:Stage II, alive, 1690 days	53.9
TCGA-UF-A7JK-01A	0 years, male, stage:Stage IVA, dead, 424 days	53.3
TCGA-CQ-7071-01A	0 years, female, white, stage:Stage III, alive, 1311 days	53.0
TCGA-CN-4731-01A	0 years, female, white, stage:Stage IVA, dead, 998 days	52.5
TCGA-DQ-5625-01A	0 years, female, white, stage:'--, dead, 1133 days	52.4
TCGA-BB-A5HY-01A	0 years, male, white, stage:Stage IVA, dead, 321 days	52.4
TCGA-CV-7238-01A	0 years, female, white, stage:Stage II, alive, 2727 days	52.3
TCGA-IQ-7630-01A	0 years, male, white, stage:Stage II, alive, 485 days	51.9
TCGA-CV-7252-01A	0 years, female, black or african american, stage:Stage IVA, dead, 151 days	51.7
TCGA-CV-5431-01A	0 years, male, white, stage:Stage IVA, dead, 522 days	51.7
TCGA-CQ-7069-01A	0 years, female, white, stage:Stage II, alive, 1274 days	51.7
TCGA-CQ-A4CB-01A	0 years, male, stage:Stage III, alive, 893 days	51.4
TCGA-CQ-6227-01A	0 years, male, white, stage:Stage IVA, dead, 129 days	51.3
TCGA-BB-4228-01A	0 years, male, white, stage:Stage III, alive, 559 days	51.0
TCGA-D6-6517-01A	0 years, male, white, stage:Stage III, alive, 292 days	51.0
TCGA-P3-A5QA-01A	0 years, male, stage:Stage I, alive, 2182 days	50.3
TCGA-BA-A6DA-01A	0 years, female, white, stage:Stage IVA, alive, 351 days	50.2
TCGA-QK-A652-01A	0 years, male, white, stage:Stage III, alive, 645 days	50.2
TCGA-CQ-6218-01A	0 years, female, white, stage:Stage IVA, alive, 1253 days	50.1
TCGA-BA-4078-01A	0 years, male, white, stage:'--, dead, 276 days	49.8
TCGA-H7-A6C4-01A	0 years, female, white, stage:Stage IVA, dead, 414 days	49.7
TCGA-T2-A6X2-01A	0 years, male, white, stage:Stage III, alive, 987 days	49.7
TCGA-DQ-7592-01A	0 years, male, american indian or alaska native, stage:'--, alive, 1143 days	49.4
TCGA-QK-A64Z-01A	0 years, female, white, stage:Stage IVA, dead, 641 days	49.3
TCGA-D6-A6EK-01A	0 years, male, white, stage:Stage III, alive, 875 days	49.3
TCGA-DQ-5630-01A	0 years, male, white, stage:'--, alive, 1030 days	49.1
TCGA-WA-A7H4-01A	0 years, male, white, stage:Stage II, alive, 443 days	49.0
TCGA-CN-5356-01A	0 years, male, white, stage:Stage III, alive, 1409 days	48.7
TCGA-C9-A480-01A	0 years, female, asian, stage:Stage III, alive, 386 days	48.1
TCGA-HD-7229-01A	0 years, male, white, stage:Stage IVA, alive, 1027 days	47.9
TCGA-CN-A642-01A	0 years, male, white, stage:Stage IVB, dead, 82 days	47.5
TCGA-BA-A6DJ-01A	0 years, male, asian, stage:Stage IVA, dead, 407 days	47.3
TCGA-CV-A45P-01A	0 years, female, white, stage:Stage I, alive, 639 days	47.2
TCGA-CN-4737-01A	0 years, male, white, stage:Stage IVA, alive, 625 days	47.2
TCGA-CR-6488-01A	0 years, female, white, stage:Stage II, alive, 379 days	46.9
TCGA-CV-6436-01A	0 years, male, white, stage:Stage IVA, alive, 1899 days	46.9
TCGA-CR-7365-01A	0 years, male, white, stage:Stage IVA, alive, 1191 days	46.9
TCGA-CV-6936-01A	0 years, male, white, stage:Stage IVA, dead, 166 days	46.7
TCGA-CV-5444-01A	0 years, male, black or african american, stage:Stage IVA, alive, 2437 days	46.7
TCGA-IQ-A61O-01A	0 years, male, white, stage:Stage IVA, dead, 421 days	46.1
TCGA-UF-A7JH-01A	0 years, male, black or african american, stage:Stage IVA, alive, 896 days	45.9
TCGA-CV-A6JD-01A	0 years, female, white, stage:'--, dead, 182 days	45.9
TCGA-CN-A49A-01A	0 years, male, white, stage:Stage IVB, dead, 526 days	45.8
TCGA-UF-A7JS-01A	0 years, male, white, stage:Stage IVA, dead, 680 days	45.5
TCGA-CN-5365-01A	0 years, male, white, stage:Stage IVB, dead, 351 days	45.5
TCGA-CV-7568-01A	0 years, female, white, stage:Stage IVA, dead, 927 days	45.3
TCGA-CQ-7072-01A	0 years, male, white, stage:Stage II, alive, 2359 days	45.1
TCGA-CN-5358-01A	0 years, male, white, stage:Stage II, dead, 261 days	44.7
TCGA-BA-7269-01A	0 years, male, white, stage:Stage III, alive, 1273 days	44.4
TCGA-CQ-A4CE-01A	0 years, female, stage:Stage II, alive, 897 days	44.2
TCGA-CV-6952-01A	0 years, female, white, stage:Stage IVA, dead, 185 days	43.8
TCGA-D6-A6EN-01A	0 years, male, white, stage:Stage III, alive, 687 days	43.7
TCGA-CN-4733-01A	0 years, male, white, stage:Stage III, alive, 1586 days	43.6
TCGA-F7-A620-01A	0 years, male, white, stage:Stage III, alive, 543 days	43.2
TCGA-CV-A45O-01A	0 years, male, white, stage:'--, alive, 851 days	42.7
TCGA-RS-A6TO-01A	0 years, female, white, stage:Stage IVA, dead, 387 days	42.5
TCGA-CN-6018-01A	0 years, female, white, stage:Stage IVA, dead, 580 days	42.5
TCGA-F7-A61S-01A	0 years, male, white, stage:Stage III, alive, 576 days	42.4
TCGA-HD-A633-01A	0 years, male, white, stage:Stage IVA, alive, 421 days	42.2
TCGA-BA-A6DG-01A	0 years, male, white, stage:'--, dead, 69 days	41.8
TCGA-CV-A6JM-01A	0 years, male, white, stage:'--, dead, 194 days	41.0
TCGA-C9-A47Z-01A	0 years, female, asian, stage:Stage III, dead, 191 days	40.9
TCGA-IQ-7631-01A	0 years, female, white, stage:Stage II, alive, 1172 days	39.9
TCGA-4P-AA8J-01A	0 years, male, black or african american, stage:Stage IVA, alive, 102 days	39.4
TCGA-TN-A7HI-01A	0 years, male, white, stage:Stage IVA, alive, 412 days	39.3
TCGA-CN-A63V-01A	0 years, male, white, stage:Stage IVA, alive, 679 days	38.9
TCGA-CV-7178-01A	0 years, female, white, stage:Stage IVA, dead, 2166 days	38.3
TCGA-CN-5355-01A	0 years, male, black or african american, stage:Stage IVA, alive, 1278 days	37.9
TCGA-CQ-7065-01A	0 years, male, asian, stage:Stage II, alive, 1628 days	37.7
TCGA-QK-A6IH-01A	0 years, female, white, stage:Stage IVB, alive, 653 days	37.1
TCGA-DQ-5624-01A	0 years, female, white, stage:'--, alive, 1778 days	36.5
TCGA-D6-A6EM-01A	0 years, female, white, stage:Stage III, alive, 232 days	36.4
TCGA-DQ-7591-01A	0 years, male, white, stage:'--, alive, 622 days	36.2
TCGA-P3-A6SX-01A	0 years, male, white, stage:Stage III, dead, 1430 days	35.7
TCGA-D6-A6EQ-01A	0 years, male, white, stage:Stage IVA, alive, 368 days	35.6
TCGA-BB-4224-01A	0 years, male, white, stage:Stage IVA, alive, 278 days	35.5
TCGA-CN-6998-01A	0 years, male, white, stage:Stage IVA, dead, 357 days	35.2
TCGA-CN-6017-01A	0 years, male, white, stage:Stage IVA, dead, 853 days	34.9
TCGA-CV-7434-01A	0 years, male, white, stage:Stage IVA, dead, 218 days	33.9
TCGA-P3-A6T3-01A	0 years, male, white, stage:Stage IVA, dead, 577 days	33.4
TCGA-QK-A6II-01A	0 years, male, white, stage:Stage IVA, dead, 284 days	33.4
TCGA-D6-A6EP-01A	0 years, male, white, stage:Stage III, alive, 424 days	32.9
TCGA-CV-5977-01A	0 years, male, white, stage:Stage IVA, alive, 1840 days	31.7
TCGA-BA-4075-01A	0 years, male, black or african american, stage:Stage III, dead, 283 days	31.6
TCGA-CV-6942-01A	0 years, female, white, stage:Stage II, alive, 4282 days	31.4
TCGA-CR-7373-01A	0 years, male, white, stage:Stage IVA, alive, 889 days	31.2
TCGA-CV-A6JT-01A	0 years, male, white, stage:Stage II, alive, 852 days	31.0
TCGA-BA-4074-01A	0 years, male, white, stage:Stage IVA, dead, 462 days	28.2
TCGA-F7-A622-01A	0 years, male, white, stage:Stage III, dead, 359 days	27.8
TCGA-CV-A6K1-01A	0 years, male, white, stage:Stage IVA, alive, 685 days	27.8
TCGA-HD-A6I0-01A	0 years, male, white, stage:Stage IVA, alive, 210 days	26.1
TCGA-CV-A45Q-01A	0 years, female, white, stage:'--, dead, 5152 days	24.6
TCGA-F7-A50J-01A	0 years, female, white, stage:Stage III, alive, 947 days	24.4
TCGA-CV-7425-01A	0 years, female, white, stage:Stage III, dead, 1718 days	23.9
TCGA-CV-A6JE-01A	0 years, male, white, stage:'--, alive, 1075 days	22.1
TCGA-CR-7374-01A	0 years, female, white, stage:'--, alive, 30 days	11.2
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HEAD AND NECK SQUAMOUS CELL CARCINOMA - Protein relative expression (CPTAC)

Number of samples

183

Samples

Sample ID	Sample type	nRPX
CPT0201830004	Tumor	1.3
CPT0169740004	Normal	1.1
CPT0195680003	Tumor	0.9
CPT0226340003	Tumor	0.9
CPT0237640003	Normal	0.9
C3N-00295-05	Normal	0.9
CPT0226270003	Normal	0.8
CPT0163410003	Tumor	0.8
CPT0013000004	Tumor	0.7
CPT0163610003	Normal	0.7
CPT0226350003	Normal	0.7
C3N-02693-06	Normal	0.7
C3N-00857-05	Normal	0.7
CPT0088010003	Normal	0.7
CPT0245060004	Tumor	0.6
CPT0235920003	Normal	0.5
CPT0163250003	Normal	0.5
CPT0163910003	Tumor	0.5
CPT0245020003	Normal	0.5
CPT0094580003	Normal	0.5
CPT0245450003	Tumor	0.5
CPT0011320003	Normal	0.5
CPT0008960003	Normal	0.5
CPT0245460003	Normal	0.5
CPT0199880003	Tumor	0.5
CPT0084630009	Tumor	0.5
CPT0245190003	Normal	0.5
CPT0194800003	Normal	0.4
CPT0163170003	Normal	0.4
CPT0226450003	Normal	0.4
CPT0084650004	Normal	0.4
CPT0278700002	Normal	0.4
CPT0237130004	Tumor	0.4
CPT0177220003	Normal	0.4
CPT0226090003	Normal	0.3
CPT0123190003	Normal	0.3
CPT0223970003	Tumor	0.3
CPT0243090003	Tumor	0.3
CPT0163860003	Normal	0.3
CPT0237500003	Normal	0.3
C3N-01859-04	Normal	0.3
CPT0245680003	Tumor	0.3
CPT0163430003	Normal	0.3
CPT0199820003	Tumor	0.3
CPT0245630003	Tumor	0.3
CPT0163790003	Tumor	0.3
CPT0163020003	Normal	0.3
CPT0123180003	Tumor	0.3
CPT0199710003	Normal	0.3
CPT0184530003	Tumor	0.3
CPT0245560003	Normal	0.3
C3N-04279-05	Normal	0.2
CPT0199890003	Normal	0.2
C3N-01758-04	Normal	0.2
CPT0195860003	Tumor	0.2
CPT0162890003	Tumor	0.2
CPT0163740003	Tumor	0.2
C3N-04275-05	Normal	0.2
CPT0236870003	Normal	0.2
CPT0245730003	Tumor	0.2
CPT0229220002	Normal	0.2
CPT0222360003	Tumor	0.2
CPT0196060003	Normal	0.2
CPT0237150003	Normal	0.2
CPT0195700003	Normal	0.1
CPT0163160003	Tumor	0.1
CPT0088080003	Normal	0.1
CPT0248350003	Normal	0.1
CPT0226400003	Normal	0.1
C3N-04276-06	Normal	0.1
CPT0163490003	Normal	0.1
CPT0201860004	Normal	0.1
CPT0190860003	Normal	0.1
CPT0222200003	Normal	0.1
CPT0190850003	Tumor	0.0
CPT0013210004	Tumor	0.0
CPT0088410003	Tumor	0.0
CPT0199830003	Normal	0.0
CPT0177390003	Tumor	0.0
CPT0163800003	Normal	0.0
CPT0236640003	Normal	0.0
CPT0013030003	Normal	0.0
CPT0194260003	Normal	0.0
CPT0013460003	Normal	0.0
CPT0223460003	Normal	-0.1
CPT0248330003	Tumor	-0.1
CPT0195880003	Normal	-0.1
CPT0245410003	Normal	-0.1
C3N-01620-05	Normal	-0.1
CPT0127050003	Tumor	-0.1
CPT0013250003	Normal	-0.1
CPT0169890003	Tumor	-0.1
CPT0163720003	Normal	-0.1
CPT0088430003	Normal	-0.1
CPT0008520008	Tumor	-0.1
CPT0245180003	Tumor	-0.1
CPT0196210003	Tumor	-0.1
CPT0246670003	Tumor	-0.1
CPT0236620003	Tumor	-0.2
CPT0246620003	Tumor	-0.2
CPT0245130003	Tumor	-0.2
CPT0013430003	Tumor	-0.2
CPT0220620003	Normal	-0.2
CPT0163600003	Tumor	-0.2
CPT0236850004	Tumor	-0.2
CPT0013130003	Tumor	-0.2
CPT0123280003	Normal	-0.2
CPT0199700003	Tumor	-0.2
CPT0008630003	Tumor	-0.3
CPT0207870004	Tumor	-0.3
CPT0226390003	Tumor	-0.3
CPT0243140004	Normal	-0.3
CPT0087990003	Tumor	-0.3
CPT0246590003	Tumor	-0.3
CPT0242000004	Normal	-0.3
CPT0011290003	Tumor	-0.3
CPT0177010003	Tumor	-0.3
CPT0024810003	Tumor	-0.3
CPT0246540003	Tumor	-0.3
CPT0196040003	Tumor	-0.3
CPT0095040003	Tumor	-0.3
CPT0281470002	Normal	-0.3
CPT0177710003	Tumor	-0.3
CPT0163650003	Tumor	-0.3
CPT0261520003	Tumor	-0.3
CPT0226250004	Tumor	-0.4
CPT0194960003	Tumor	-0.4
CPT0223450003	Tumor	-0.4
CPT0094280004	Tumor	-0.4
CPT0241980004	Tumor	-0.4
CPT0087820003	Tumor	-0.4
CPT0235460003	Tumor	-0.4
CPT0163480003	Tumor	-0.4
CPT0163240003	Tumor	-0.4
CPT0226130003	Tumor	-0.4
CPT0094490004	Tumor	-0.4
CPT0245550003	Tumor	-0.4
CPT0235470002	Normal	-0.4
CPT0123260003	Tumor	-0.4
CPT0169640003	Tumor	-0.5
CPT0008930003	Tumor	-0.5
CPT0256560003	Tumor	-0.5
CPT0222180003	Tumor	-0.5
CPT0163530003	Tumor	-0.5
CPT0245300003	Tumor	-0.5
CPT0088060004	Tumor	-0.5
CPT0094560004	Tumor	-0.5
CPT0169730003	Tumor	-0.5
CPT0194250003	Tumor	-0.5
CPT0163840003	Tumor	-0.5
CPT0177200003	Tumor	-0.5
CPT0245140003	Normal	-0.5
CPT0194420003	Tumor	-0.5
CPT0245010003	Tumor	-0.5
CPT0250310003	Tumor	-0.5
CPT0237480004	Tumor	-0.5
CPT0237620004	Tumor	-0.5
CPT0235910003	Tumor	-0.6
CPT0169920003	Normal	-0.6
CPT0094350004	Tumor	-0.6
CPT0162940003	Tumor	-0.6
CPT0248520003	Tumor	-0.6
CPT0226440003	Tumor	-0.6
CPT0245600003	Tumor	-0.7
CPT0011130005	Tumor	-0.7
CPT0245500003	Tumor	-0.7
CPT0194790003	Tumor	-0.7
CPT0226030003	Tumor	-0.8
CPT0176770003	Tumor	-0.8
CPT0163090003	Tumor	-0.8
CPT0244890004	Tumor	-0.8
CPT0245400003	Tumor	-0.8
CPT0244940004	Tumor	-0.8
CPT0162990004	Tumor	-0.8
CPT0245230004	Tumor	-0.9
CPT0220610003	Tumor	-0.9
CPT0163340003	Tumor	-0.9
CPT0094420004	Tumor	-1.0
CPT0245350003	Tumor	-1.2
CPT0229230003	Normal	N/A
CPT0169750003	Normal	N/A
CPT0229210003	Tumor	N/A
CPT0229190003	Tumor	N/A
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HEAD AND NECK CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.	Antibody HPA031314	Antibody HPA031315
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Squamous cell carcinoma, NOS
Squamous cell carcinoma, NOS Squamous cell carcinoma, metastatic, NOS
Adenocarcinoma, NOS