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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
196.2
nTPM
FANTOM5:
237.6
Scaled Tags Per Million
Pig:
66.7
nTPM
Allen mouse:
6.0
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
196.2
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 85.8
1984
Male, age 76, both hemispheres
115.0
2188
Female, age 91, both hemispheres
87.0
2301
Female, age 85, both hemispheres
81.2
2090
Male, age 80, both hemispheres
59.8
Dorsal cochlear nucleus nTPM: 56.5
2058
Male, age 76, both hemispheres
64.4
2802
Male, age 74, right hemisphere
62.7
2378
Male, age 80, both hemispheres
54.6
2370
Male, age 61, both hemispheres
52.3
2187
Female, age 91, both hemispheres
48.4
Dorsal tegmental nucleus nTPM: 65.1
2358
Male, age 61, both hemispheres
90.1
1936
Male, age 76, left hemisphere
70.7
2083
Male, age 80, both hemispheres
54.3
2326
Male, age 74, both hemispheres
45.4
Dorsolateral tegmental area nTPM: 45.4
2337
Male, age 61, both hemispheres
79.3
2654
Male, age 80, both hemispheres
51.6
2141
Male, age 76, both hemispheres
40.1
2360
Male, age 74, both hemispheres
33.1
2751
Female, age 85, both hemispheres
23.1
Kolliker-Fuse nucleus nTPM: 76.9
2793
Female, age 91, left hemisphere
126.3
2315
Male, age 76, right hemisphere
59.5
2163
Male, age 80, both hemispheres
44.9
Lateral lemniscal nuclei nTPM: 171.6
2453
Male, age 74, right hemisphere
244.1
2169
Male, age 76, both hemispheres
198.6
2036
Male, age 80, both hemispheres
143.5
2320
Female, age 91, left hemisphere
140.1
2746
Female, age 85, left hemisphere
131.8
Lateral parabrachial nucleus nTPM: 87.5
2139
Female, age 85, right hemisphere
147.9
2013
Male, age 80, both hemispheres
78.7
2790
Male, age 61, both hemispheres
73.7
2792
Male, age 76, both hemispheres
49.6
Lateral vestibular nucleus nTPM: 48.5
2311
Male, age 80, both hemispheres
48.6
2184
Male, age 76, both hemispheres
48.5
Locus coeruleus nTPM: 39.1
2720
Male, age 74, both hemispheres
46.8
2162
Male, age 80, both hemispheres
43.7
2123
Female, age 91, both hemispheres
43.2
1980
Male, age 76, both hemispheres
38.9
2317
Female, age 72, unknown
36.3
2014
Male, age 55, unknown
34.3
2788
Male, age 74, unknown
30.3
Medial parabrachial nucleus nTPM: 51.9
2854
Male, age 80, both hemispheres
92.4
2156
Male, age 61, both hemispheres
59.6
2786
Male, age 76, both hemispheres
47.5
2170
Female, age 91, both hemispheres
33.4
2463
Female, age 85, right hemisphere
26.4
Medial periolivary nuclei nTPM: 163.7
2063
Male, age 76, both hemispheres
216.8
2171
Female, age 85, both hemispheres
216.4
2791
Male, age 74, right hemisphere
144.3
2458
Female, age 91, both hemispheres
137.8
2081
Male, age 80, both hemispheres
103.4
Motor facial nucleus nTPM: 173.0
2062
Male, age 76, both hemispheres
244.2
2795
Female, age 91, both hemispheres
201.0
2327
Male, age 80, both hemispheres
198.2
2365
Male, age 74, right hemisphere
168.2
2697
Female, age 85, both hemispheres
166.1
2126
Male, age 61, both hemispheres
60.2
Motor trigeminal nucleus nTPM: 107.5
2560
Male, age 74, both hemispheres
173.3
2079
Male, age 80, both hemispheres
140.1
2321
Female, age 91, both hemispheres
104.3
2335
Male, age 61, both hemispheres
68.6
2309
Male, age 76, both hemispheres
51.3
Nuclei of the trapezoid body nTPM: 196.2
2159
Male, age 61, both hemispheres
226.6
2735
Female, age 85, both hemispheres
223.1
1983
Male, age 76, both hemispheres
207.0
2368
Female, age 91, both hemispheres
174.3
2166
Male, age 80, both hemispheres
150.1
Nucleus raphe magnus nTPM: 193.3
2172
Female, age 85, both hemispheres
252.2
2455
Male, age 74, both hemispheres
202.4
2160
Male, age 61, both hemispheres
195.5
2328
Male, age 80, both hemispheres
177.9
2051
Male, age 76, both hemispheres
172.6
2459
Female, age 91, both hemispheres
159.1
Paramedian reticular nucleus nTPM: 73.0
2050
Female, age 85, both hemispheres
152.8
2313
Male, age 61, both hemispheres
53.6
2057
Male, age 80, both hemispheres
46.6
2052
Male, age 76, both hemispheres
39.1
Pedunculopontine tegmental nucleus nTPM: 46.6
2338
Male, age 61, both hemispheres
74.4
2334
Male, age 80, both hemispheres
41.5
1921
Female, age 85, both hemispheres
23.9
Pontine nuclei nTPM: 187.6
1863
Male, age 55, unknown
302.8
2109
Female, age 72, unknown
239.9
2787
Female, age 85, both hemispheres
225.3
1968
Male, age 76, left hemisphere
210.2
2727
Male, age 61, right hemisphere
165.6
2454
Male, age 74, left hemisphere
141.5
2115
Male, age 80, left hemisphere
125.9
2319
Female, age 91, both hemispheres
89.5
Pontine raphe nucleus nTPM: 84.3
2122
Female, age 85, midline
132.5
2853
Male, age 76, midline
36.1
Posteroventral cochlear nucleus nTPM: 55.7
2070
Male, age 76, both hemispheres
74.5
2752
Female, age 85, both hemispheres
66.7
2371
Male, age 61, both hemispheres
54.2
2341
Male, age 80, both hemispheres
52.6
2135
Female, age 91, both hemispheres
30.7
Principal sensory trigeminal nucleus nTPM: 121.3
2158
Male, age 61, both hemispheres
180.2
2008
Male, age 80, left hemisphere
146.4
2367
Female, age 91, left hemisphere
110.3
2324
Male, age 76, both hemispheres
48.2
Reticular pontine nucleus, caudal nTPM: 137.6
2332
Male, age 80, right hemisphere
220.5
2092
Male, age 76, both hemispheres
145.5
2457
Female, age 91, both hemispheres
144.0
2559
Male, age 74, both hemispheres
40.3
Reticular pontine nucleus, oral nTPM: 83.2
2361
Male, age 74, both hemispheres
144.5
2012
Female, age 85, both hemispheres
107.8
2366
Female, age 91, both hemispheres
101.8
2167
Male, age 76, both hemispheres
32.5
1939
Male, age 80, both hemispheres
29.6
Reticulotegmental nucleus nTPM: 112.5
2325
Male, age 76, both hemispheres
119.5
2452
Male, age 74, both hemispheres
116.6
2333
Male, age 80, both hemispheres
114.3
2322
Female, age 91, both hemispheres
99.8
Spinal trigeminal nucleus, oral nTPM: 49.9
2164
Male, age 80, both hemispheres
56.7
1978
Male, age 76, both hemispheres
47.9
2737
Female, age 85, both hemispheres
45.2
Subcoeruleus area nTPM: 69.0
2089
Male, age 76, left hemisphere
138.4
1958
Male, age 80, both hemispheres
90.3
2323
Female, age 91, left hemisphere
49.2
2451
Male, age 74, both hemispheres
46.3
2369
Female, age 85, left hemisphere
20.8
Superior olive nTPM: 154.1
1875
Female, age 85, both hemispheres
179.4
2561
Female, age 91, both hemispheres
172.8
2329
Male, age 80, right hemisphere
168.4
2020
Male, age 76, both hemispheres
129.6
2364
Male, age 74, right hemisphere
120.3
Ventral periolivary nuclei nTPM: 167.7
2130
Female, age 85, both hemispheres
196.6
2165
Male, age 80, both hemispheres
193.2
2794
Female, age 91, left hemisphere
175.2
2023
Male, age 76, both hemispheres
105.7
Ventrolateral tegmental area, A5 NE cell group nTPM: 130.2
2449
Male, age 74, both hemispheres
198.8
1959
Male, age 76, both hemispheres
156.4
2161
Male, age 80, both hemispheres
150.9
2456
Female, age 91, both hemispheres
144.4
2840
Female, age 85, both hemispheres
81.6
2359
Male, age 61, both hemispheres
49.4
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.7
Pig sample
Sample description
nTPM
Pons nTPM: 66.7
Samples: 4
Max nTPM: 109.9
Min nTPM: 47.4
Sample A
Female
55.5
Sample B
Female
47.4
Sample C
Male
54.1
Sample D
Male
109.9
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
