MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.5 nTPM
HPA Brain:51.6 nTPM
GTEx:34.5 nTPM
FANTOM5:40.2 Scaled Tags Per Million
Pig:57.5 nTPM
Mouse:82.6 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 51.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.3
2586 Male, age 75, left hemisphere 63.9
2666 Male, age 74, left hemisphere 53.5
2828 Female, age 72, unknown 48.8
1827 Male, age 72, unknown 45.5
1870 Female, age 42, unknown 35.9
1830 Male, age 51, unknown 33.3
2219 Male, age 76, both hemispheres 31.7
2411 Female, age 72, unknown 28.0
1833 Male, age 53, unknown 26.1
2019 Male, age 18, unknown 26.1
Dorsal raphe nucleus
nTPM: 31.9
2298 Female, age 72, unknown 35.0
2016 Female, age 72, unknown 34.1
2750 Male, age 76, both hemispheres 33.7
2047 Male, age 72, unknown 28.9
1828 Male, age 53, unknown 27.6
Inferior colliculus
nTPM: 34.9
2849 Male, age 72, unknown 52.4
1848 Female, age 42, unknown 44.3
2097 Female, age 72, unknown 21.8
1890 Male, age 53, unknown 21.4
Median raphe nucleus
nTPM: 32.9
2220 Male, age 76, midline 32.9
Periaquaductal grey, anterior
nTPM: 43.3
1947 Male, age 18, unknown 49.3
1795 Male, age 51, unknown 47.9
2502 Female, age 75, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 30.3
2850 Male, age 76, both hemispheres 31.4
1840 Male, age 53, unknown 30.9
1831 Male, age 72, unknown 29.6
2464 Female, age 72, unknown 29.4
Periaquaductal grey, lateral
nTPM: 33.3
2272 Male, age 74, both hemispheres 35.0
2053 Male, age 18, unknown 34.4
2140 Male, age 76, both hemispheres 30.6
Pretectal area
nTPM: 34.6
2825 Male, age 18, unknown 51.2
2407 Male, age 75, both hemispheres 44.8
1816 Male, age 51, unknown 42.2
2224 Female, age 72, unknown 38.1
2007 Male, age 72, unknown 36.7
2273 Male, age 74, both hemispheres 31.2
2667 Female, age 75, unknown 30.0
2316 Male, age 76, right hemisphere 29.8
1817 Female, age 42, unknown 28.4
1944 Female, age 72, unknown 25.0
1815 Male, age 53, unknown 22.9
Red nucleus
nTPM: 35.8
2584 Male, age 75, left hemisphere 58.9
2769 Male, age 72, unknown 41.2
2725 Female, age 75, unknown 40.2
2227 Male, age 72, unknown 39.6
1821 Female, age 72, unknown 36.8
1954 Female, age 42, unknown 36.3
2588 Male, age 74, left hemisphere 34.4
2823 Male, age 76, right hemisphere 33.5
1865 Male, age 51, unknown 32.3
2785 Male, age 18, unknown 26.8
2503 Female, age 72, unknown 25.7
1904 Male, age 53, unknown 23.6
Substantia nigra
nTPM: 51.6
1941 Male, age 53, unknown 174.3
2583 Male, age 75, right hemisphere 59.0
2665 Male, age 74, both hemispheres 54.2
2590 Female, age 75, unknown 43.9
1916 Female, age 42, unknown 38.5
2699 Male, age 18, unknown 37.3
1889 Female, age 72, unknown 31.5
1851 Male, age 51, unknown 30.4
2241 Male, age 72, unknown 26.6
2409 Female, age 72, unknown 19.9
Superior colliculus
nTPM: 36.0
2664 Male, age 75, both hemispheres 55.5
1839 Male, age 51, unknown 48.3
2668 Female, age 75, unknown 42.0
2261 Male, age 18, unknown 39.8
2587 Male, age 74, left hemisphere 38.3
1796 Male, age 53, unknown 36.7
1895 Male, age 76, right hemisphere 31.2
2087 Female, age 72, unknown 25.3
1913 Female, age 42, unknown 21.4
1995 Male, age 72, unknown 21.1
Ventral tegmental area
nTPM: 33.2
2021 Male, age 53, unknown 38.4
2223 Female, age 72, unknown 36.1
1915 Female, age 42, unknown 34.4
2218 Male, age 76, both hemispheres 33.6
2410 Female, age 72, unknown 28.8
1942 Male, age 51, unknown 28.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.5
Samples: 139

Max nTPM: 423.8
Min nTPM: 8.7
Std nTPM: 43.8
Median nTPM: 26.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 423.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 220.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 209.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 202.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 92.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 68.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 55.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 53.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 48.5
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 47.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 44.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 40.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.2
FF:10158-103A5 76 years, female 40.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 57.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.3
Samples: 4

Max nTPM: 56.9
Min nTPM: 37.4
Sample A Female 56.9
Sample B Female 52.8
Sample C Male 45.9
Sample D Male 37.4
Midbrain
nTPM: 45.1
Samples: 4

Max nTPM: 54.6
Min nTPM: 37.8
Sample A Female 54.6
Sample B Female 46.2
Sample C Male 37.8
Sample D Male 41.6
Periaqueductal gray
nTPM: 47.5
Samples: 3

Max nTPM: 55.0
Min nTPM: 41.6
Sample B Female 45.8
Sample C Male 55.0
Sample D Male 41.6
Superior colliculi
nTPM: 57.6
Samples: 4

Max nTPM: 78.0
Min nTPM: 43.5
Sample A Female 78.0
Sample B Female 56.2
Sample C Male 52.5
Sample D Male 43.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 82.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 82.6
Samples: 4

Max nTPM: 89.9
Min nTPM: 74.1
Sample A Male 89.9
Sample B Male 83.8
Sample C Female 74.1
Sample D Female 82.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
69671911 Antisense, RP_050428_02_F02, Mouse strain C57BL/6J (56 days, male) 4.8

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