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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCC2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
62.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
46.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
37.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
36.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
29.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCC2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.5
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
41.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
40.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
33.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
32.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
31.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
30.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
28.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
18.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
1.0
487
Tumor
0.7
425
Tumor
0.7
355
Tumor
0.7
161
Tumor
0.7
523
Tumor
0.7
813
Tumor
0.7
695
Tumor
0.7
533
Tumor
0.7
1013
Tumor
0.6
865
Tumor
0.6
737
Tumor
0.6
965
Tumor
0.6
517
Tumor
0.6
951
Tumor
0.6
211
Tumor
0.6
663
Tumor
0.6
545
Tumor
0.6
661
Tumor
0.6
977
Tumor
0.5
743
Tumor
0.5
917
Tumor
0.5
727
Tumor
0.5
957
Tumor
0.5
921
Tumor
0.5
351
Tumor
0.5
814
Normal
0.5
463
Tumor
0.5
473
Tumor
0.5
411
Tumor
0.5
877
Tumor
0.5
431
Tumor
0.4
535
Tumor
0.4
647
Tumor
0.4
527
Tumor
0.4
963
Tumor
0.4
331
Tumor
0.4
1031
Tumor
0.4
447
Tumor
0.4
443
Tumor
0.4
563
Tumor
0.4
943
Tumor
0.4
277
Tumor
0.4
937
Tumor
0.4
1021
Tumor
0.4
953
Tumor
0.4
123
Tumor
0.4
881
Tumor
0.4
455
Tumor
0.3
367
Tumor
0.3
313
Tumor
0.3
483
Tumor
0.3
777
Tumor
0.3
515
Tumor
0.3
817
Tumor
0.3
141
Tumor
0.3
131
Tumor
0.3
741
Tumor
0.3
285
Tumor
0.3
427
Tumor
0.3
297
Tumor
0.3
283
Tumor
0.3
493
Tumor
0.3
171
Tumor
0.3
967
Tumor
0.3
492
Normal
0.3
341
Tumor
0.3
343
Tumor
0.3
671
Tumor
0.2
478
Normal
0.2
975
Tumor
0.2
883
Tumor
0.2
911
Tumor
0.2
536
Normal
0.2
433
Tumor
0.2
213
Tumor
0.2
383
Tumor
0.2
1015
Tumor
0.2
357
Tumor
0.2
311
Tumor
0.2
923
Tumor
0.2
915
Tumor
0.2
423
Tumor
0.2
444
Normal
0.2
477
Tumor
0.2
231
Tumor
0.2
724
Normal
0.2
471
Tumor
0.2
127
Tumor
0.2
461
Tumor
0.2
861
Tumor
0.2
192
Normal
0.2
112
Tumor
0.2
538
Normal
0.2
375
Tumor
0.2
863
Tumor
0.2
524
Normal
0.2
385
Tumor
0.2
415
Tumor
0.2
815
Tumor
0.2
465
Tumor
0.1
685
Tumor
0.1
721
Tumor
0.1
785
Tumor
0.1
467
Tumor
0.1
916
Normal
0.1
413
Tumor
0.1
498
Normal
0.1
421
Tumor
0.1
983
Tumor
0.1
261
Tumor
0.1
445
Tumor
0.1
823
Tumor
0.1
217
Tumor
0.1
135
Tumor
0.1
185
Tumor
0.1
1043
Tumor
0.1
147
Tumor
0.1
434
Normal
0.1
513
Tumor
0.1
641
Tumor
0.1
525
Tumor
0.1
966
Normal
0.1
221
Tumor
0.1
686
Normal
0.0
268
Normal
0.0
365
Tumor
0.0
978
Normal
0.0
635
Tumor
0.0
925
Tumor
0.0
984
Normal
0.0
571
Tumor
0.0
958
Normal
0.0
857
Tumor
0.0
384
Normal
0.0
395
Tumor
0.0
567
Tumor
0.0
516
Normal
0.0
125
Tumor
0.0
195
Tumor
0.0
387
Tumor
0.0
271
Tumor
0.0
1041
Tumor
0.0
491
Tumor
0.0
976
Normal
0.0
924
Normal
0.0
672
Normal
0.0
361
Tumor
0.0
954
Normal
0.0
212
Normal
0.0
867
Tumor
0.0
964
Normal
0.0
435
Tumor
0.0
188
Normal
0.0
922
Normal
0.0
146
Normal
0.0
557
Tumor
0.0
1014
Normal
0.0
537
Tumor
0.0
713
Tumor
0.0
412
Normal
0.0
137
Tumor
0.0
391
Tumor
0.0
126
Normal
0.0
472
Normal
-0.1
364
Normal
-0.1
913
Tumor
-0.1
662
Normal
-0.1
878
Normal
-0.1
1027
Tumor
-0.1
546
Normal
-0.1
554
Normal
-0.1
553
Tumor
-0.1
191
Tumor
-0.1
697
Tumor
-0.1
696
Normal
-0.1
744
Normal
-0.1
488
Normal
-0.1
224
Normal
-0.1
312
Normal
-0.1
573
Tumor
-0.1
267
Tumor
-0.1
918
Normal
-0.1
284
Normal
-0.1
716
Normal
-0.1
1025
Tumor
-0.1
852
Normal
-0.1
1032
Normal
-0.1
665
Tumor
-0.1
952
Normal
-0.1
481
Tumor
-0.1
938
Normal
-0.1
714
Normal
-0.1
1028
Normal
-0.1
968
Normal
-0.1
874
Normal
-0.1
755
Tumor
-0.1
386
Normal
-0.1
1044
Normal
-0.1
981
Tumor
-0.1
926
Normal
-0.1
956
Normal
-0.1
715
Tumor
-0.1
1042
Normal
-0.1
328
Normal
-0.1
484
Normal
-0.1
227
Tumor
-0.1
778
Normal
-0.1
955
Tumor
-0.1
352
Normal
-0.1
363
Tumor
-0.1
1022
Normal
-0.1
474
Normal
-0.1
514
Normal
-0.1
451
Tumor
-0.1
873
Tumor
-0.1
534
Normal
-0.1
884
Normal
-0.1
982
Normal
-0.1
456
Normal
-0.1
344
Normal
-0.1
944
Normal
-0.1
366
Normal
-0.1
664
Normal
-0.1
756
Normal
-0.1
558
Normal
-0.1
574
Normal
-0.1
448
Normal
-0.1
494
Normal
-0.1
142
Normal
-0.1
1026
Normal
-0.1
666
Normal
-0.1
1016
Normal
-0.2
528
Normal
-0.2
615
Tumor
-0.2
518
Normal
-0.2
272
Normal
-0.2
327
Tumor
-0.2
218
Normal
-0.2
332
Normal
-0.2
816
Normal
-0.2
738
Normal
-0.2
722
Normal
-0.2
628
Normal
-0.2
257
Tumor
-0.2
162
Normal
-0.2
572
Normal
-0.2
376
Normal
-0.2
462
Normal
-0.2
362
Normal
-0.2
446
Normal
-0.2
223
Tumor
-0.2
138
Normal
-0.2
882
Normal
-0.2
742
Normal
-0.2
356
Normal
-0.2
617
Tumor
-0.2
466
Normal
-0.2
432
Normal
-0.2
424
Normal
-0.2
396
Normal
-0.2
114
Normal
-0.2
426
Normal
-0.2
482
Normal
-0.2
1046
Normal
-0.2
196
Normal
-0.2
452
Normal
-0.2
124
Normal
-0.2
786
Normal
-0.2
222
Normal
-0.2
464
Normal
-0.2
258
Normal
-0.2
148
Normal
-0.2
866
Normal
-0.2
298
Normal
-0.2
354
Normal
-0.2
353
Tumor
-0.2
824
Normal
-0.2
286
Normal
-0.2
262
Normal
-0.2
228
Normal
-0.2
428
Normal
-0.2
278
Normal
-0.2
864
Normal
-0.2
314
Normal
-0.2
416
Normal
-0.2
526
Normal
-0.2
342
Normal
-0.2
636
Normal
-0.2
723
Tumor
-0.2
172
Normal
-0.2
698
Normal
-0.2
394
Normal
-0.2
468
Normal
-0.2
388
Normal
-0.2
187
Tumor
-0.2
912
Normal
-0.2
868
Normal
-0.2
186
Normal
-0.2
914
Normal
-0.2
214
Normal
-0.2
232
Normal
-0.2
858
Normal
-0.2
728
Normal
-0.2
136
Normal
-0.2
392
Normal
-0.2
746
Normal
-0.2
818
Normal
-0.3
627
Tumor
-0.3
414
Normal
-0.3
862
Normal
-0.3
368
Normal
-0.3
564
Normal
-0.3
422
Normal
-0.3
436
Normal
-0.3
132
Normal
-0.3
145
Tumor
-0.3
648
Normal
-0.3
616
Normal
-0.3
1045
Tumor
-0.3
128
Normal
-0.3
111
Normal
-0.3
618
Normal
-0.3
642
Normal
-0.3
358
Normal
-0.3
568
Normal
-0.3
745
Tumor
-0.5
851
Tumor
-0.5
393
Tumor
-0.5
113
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
